View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_low_44 (Length: 225)
Name: NF0878_low_44
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 44188449 - 44188576
Alignment:
| Q |
1 |
attacaaaatgctgggacactaaggcaagtttgttggctgctaaacaagaccaatatcagtggtccgtttgagatatcaaagaattcttttgacaacatt |
100 |
Q |
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| T |
44188449 |
attacaaaatgctgggacactaaggcaagtttgttggctgctaaacaagaccaatatcagtggtccgtttgagatatcaaagaattcttttgacaacatt |
44188548 |
T |
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| Q |
101 |
ctaatgagattgcaaatgcagtagttgg |
128 |
Q |
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| T |
44188549 |
ctaatgagattgcaaatgcagtagttgg |
44188576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 1329682 - 1329761
Alignment:
| Q |
1 |
attacaaaatgctgggacactaaggcaagtttgttggctgctaaacaagaccaatatcagtggtccgtttgagatatcaa |
80 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||| ||||||| || |||||||| |||||||||||| |
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| T |
1329682 |
attacaaaatgctggcagactaaggcaagtttgttggctgctaaacgagaccaaaattagtggtcccattgagatatcaa |
1329761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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