View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_low_48 (Length: 215)
Name: NF0878_low_48
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 53688679 - 53688891
Alignment:
| Q |
1 |
gttaatagttgctatgacaggtcagaaacagtagccaaatatttggatgagaaggaactatggagcacaaactcggacttaaatatgccaacaacattgc |
100 |
Q |
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| T |
53688679 |
gttaatagttgctatgacaggtcagaaacagtagccaaatatttggatgagaaggaactatggagcacaaactcggacttaaatatgccaacaacattgc |
53688778 |
T |
|
| Q |
101 |
aaaaattctatgttgagaatttggagcatgatgatgaatagcagaagaaggcttggtgttgcataatgttcatagtacctgggtttcaatccggagggac |
200 |
Q |
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| T |
53688779 |
aaaaattctatgttgagaatttggagcatgatgatgaatagcagaagaacgcttggtgttgcataatgttcatagtacctgggtttcaatccggagggac |
53688878 |
T |
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| Q |
201 |
tacatctgaatct |
213 |
Q |
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||||||||||||| |
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| T |
53688879 |
tacatctgaatct |
53688891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 92 - 162
Target Start/End: Original strand, 53695850 - 53695920
Alignment:
| Q |
92 |
caacattgcaaaaattctatgttgagaatttggagcatgatgatgaatagcagaagaaggcttggtgttgc |
162 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
53695850 |
caacattgcaaaaacactatgttgagaatctggagcatgatgatgaatagcagaagaaggcttggtgttgc |
53695920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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