View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_low_5 (Length: 505)
Name: NF0878_low_5
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 30 - 468
Target Start/End: Original strand, 45037053 - 45037491
Alignment:
| Q |
30 |
ctctttgatctaccagatggtcatttctacgctgttatggattgtttttgcgagagaacttggagtcacacaccacaatacaaaatcggttattgtcaac |
129 |
Q |
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| T |
45037053 |
ctctttgatctaccagatggtcatttctacgctgttatggattgtttttgcgagagaacttggagtcacacaccacaatacaaaatcggttattgtcaac |
45037152 |
T |
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| Q |
130 |
aatgtccagaaaaagtgcattggccaaaggaaatgggtcaacctccttcactttacttcaatgctggcatgttcctgtttgagccaagcattgatactta |
229 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45037153 |
aatgtccagaaaaagttcattggccaaaggaaatgggtcaacctccttcactttacttcaatgctggcatgttcctgtttgagccaagcattgatactta |
45037252 |
T |
|
| Q |
230 |
ccacgatcttttgaagacacttaaagttactcctcctactccttttgctgaacaagatttcttgaatatgtatttcaaggatatttataagccaatccca |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45037253 |
ccacgatcttttgaagacacttaaagttactcctcctactccttttgctgaacaagatttcttgaatatgtatttcaaggatatttataagccaatccca |
45037352 |
T |
|
| Q |
330 |
ttggtttacaatcttgttcttgctatgttatggcgtcatcctgaaaatgttgagcttcataaagtcaaggttgttcactattgtgcagcggtaagtaatg |
429 |
Q |
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| T |
45037353 |
tttgtttacaatcttgttcttgctatgttatggcgtcaccctgaaaatgttgagcttcataaagtcaaggttgttcactattgtgcagcggtaagtaatg |
45037452 |
T |
|
| Q |
430 |
gaatgcatattttgatttattgattgtgtgaataaattt |
468 |
Q |
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| T |
45037453 |
caatgcatattttgatttattgattgtgtgaataaattt |
45037491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 415
Target Start/End: Complemental strand, 45944147 - 45944023
Alignment:
| Q |
291 |
ttgaatatgtatttcaaggatatttataagccaatcccattggtttacaatcttgttcttgctatgttatggcgtcatcctgaaaatgttgagcttcata |
390 |
Q |
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| T |
45944147 |
ttgaacatgtatttcaaggataaatacaagcctatacctaatgtgtacaatcttgtgttggccatgatgtggcgtcatcctgagaatgttgagcttgaga |
45944048 |
T |
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| Q |
391 |
aagtcaaggttgttcactattgtgc |
415 |
Q |
| |
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|||| | ||||||||||||||||| |
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| T |
45944047 |
aagttcaagttgttcactattgtgc |
45944023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 284 - 425
Target Start/End: Original strand, 20395224 - 20395365
Alignment:
| Q |
284 |
agatttcttgaatatgtatttcaaggatatttataagccaatcccattggtttacaatcttgttcttgctatgttatggcgtcatcctgaaaatgttgag |
383 |
Q |
| |
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|||||| ||||||||||||||||| |||| |||||||| ||||| |||||||||||||| || || ||||| |||||||||||||| |||||||| |
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| T |
20395224 |
agattttttgaatatgtatttcaatgataaatataagcctatccctaatgtttacaatcttgtgctggccatgttgtggcgtcatcctgagaatgttgaa |
20395323 |
T |
|
| Q |
384 |
cttcataaagtcaaggttgttcactattgtgcagcggtaagt |
425 |
Q |
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||| | |||||||| |||||||| || ||||||||||||||| |
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| T |
20395324 |
cttgagaaagtcaaagttgttcattactgtgcagcggtaagt |
20395365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 422
Target Start/End: Complemental strand, 37687052 - 37686915
Alignment:
| Q |
285 |
gatttcttgaatatgtatttcaaggatatttataagccaatcccattggtttacaatcttgttcttgctatgttatggcgtcatcctgaaaatgttgagc |
384 |
Q |
| |
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||||| ||||| || |||||||| || | ||||||||||| ||| ||||| |||||||| | || ||||| |||||||| ||||| |||||||| | |
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| T |
37687052 |
gattttttgaacatatatttcaaagacaaatataagccaattccaaatgtttataatcttgtgttggccatgttgtggcgtcaccctgagaatgttgaac |
37686953 |
T |
|
| Q |
385 |
ttcataaagtcaaggttgttcactattgtgcagcggta |
422 |
Q |
| |
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|| | |||||||| |||||||| || |||||||||||| |
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| T |
37686952 |
ttgagaaagtcaaagttgttcattactgtgcagcggta |
37686915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 422
Target Start/End: Original strand, 37698466 - 37698603
Alignment:
| Q |
285 |
gatttcttgaatatgtatttcaaggatatttataagccaatcccattggtttacaatcttgttcttgctatgttatggcgtcatcctgaaaatgttgagc |
384 |
Q |
| |
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||||| ||||| || |||||||| || | ||||||||||| ||| ||||| |||||||| | || ||||| |||||||| ||||| |||||||| | |
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| T |
37698466 |
gattttttgaacatatatttcaaagacaaatataagccaattccaaatgtttataatcttgtgttggccatgttgtggcgtcaccctgagaatgttgaac |
37698565 |
T |
|
| Q |
385 |
ttcataaagtcaaggttgttcactattgtgcagcggta |
422 |
Q |
| |
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|| | |||||||| |||||||| || |||||||||||| |
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| T |
37698566 |
ttgagaaagtcaaagttgttcattactgtgcagcggta |
37698603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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