View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_low_50 (Length: 205)
Name: NF0878_low_50
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 35034569 - 35034745
Alignment:
| Q |
18 |
gaaagggatgctaaagatccaaaatatgtacttgttacatatgatggaaaacatacacatggacctgtcgttgataagaaaag---accaacatactcga |
114 |
Q |
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| T |
35034569 |
gaaagggatgctaaagatccaaaatatgtacttgttacatatgatggaaaacatacccatggacctgtcattgataagaaaagtcgaccaacatactcga |
35034668 |
T |
|
| Q |
115 |
gaaatactaatgcagctggagtgcgtagaaatgtcagcatgccgccaccaccatcaccaccatctgcattgcctatg |
191 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35034669 |
gaaatactaatgcagctggagtgcgtagaaatgccagcatgccgccaccaccatcaccaccatctgcattgcctatg |
35034745 |
T |
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