View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_low_7 (Length: 464)
Name: NF0878_low_7
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 32 - 454
Target Start/End: Complemental strand, 25866502 - 25866077
Alignment:
| Q |
32 |
aaatgaaatattatcttctttcgatgaccgactcaggctctatgctaccaagcagttaacaaaggtaagctatatcttgatggaggcatttcttcatttg |
131 |
Q |
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| T |
25866502 |
aaatgaaatattatcttctttcgatgaccgactcaggctctatgctaccaagcagttaacaaaggtaagctatatcttgatagaggcatttcttcatttg |
25866403 |
T |
|
| Q |
132 |
gaatgtttcatatgagtaaaagtttaacatatgcgtctatagaaattatgtttatacaagaattatgtatttcacaaactgttgaaactcttca-----t |
226 |
Q |
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| T |
25866402 |
gaatgtttcatatgagtaaaagtttaacatatgcgtctatagaaattatgtttatacaagaattatgtatttcacaaactgatgaaactcttcatcaatt |
25866303 |
T |
|
| Q |
227 |
atgatagtattagtatctgaattgtcaaggtagttgttaaaagtgttccatattagtttttatattttccaatattgtagtttatctcagtcaggagttc |
326 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25866302 |
atgatagtattagtatctgaattgacaaagtagttgttaaaactgttccatattag--tttatattttccaatattgtagtttatctcagtcaggagttc |
25866205 |
T |
|
| Q |
327 |
gtcttgttcgtggcattgtgaaagatgttaaagctcagaagattatcctaaatgatggtactgaggttccatttggtttgctggtatggtctactggtgt |
426 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25866204 |
gtcttgttcgtggcattgtgaaagatgttaaagctcagaagattatcctaaatgatggtaccgaggttccatttggtttgctggtatggtctactggtgt |
25866105 |
T |
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| Q |
427 |
tggcccatcaccaattattcaatctctg |
454 |
Q |
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| T |
25866104 |
tggcccatcaccaattattcaatctctg |
25866077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 313 - 438
Target Start/End: Complemental strand, 30217959 - 30217834
Alignment:
| Q |
313 |
tcagtcaggagttcgtcttgttcgtggcattgtgaaagatgttaaagctcagaagattatcctaaatgatggtactgaggttccatttggtttgctggta |
412 |
Q |
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|||||||||||| || |||||||| ||||||||||||||||| ||| |||||||||| || || ||||||||||||||||||| || |||||||| |
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| T |
30217959 |
tcagtcaggagtgcgacttgttcgaggcattgtgaaagatgtacaagaaaagaagattatacttaacgatggtactgaggttccatacggattgctggtt |
30217860 |
T |
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| Q |
413 |
tggtctactggtgttggcccatcacc |
438 |
Q |
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||||||||||| ||||| |||||||| |
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| T |
30217859 |
tggtctactggagttggtccatcacc |
30217834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 30218149 - 30218080
Alignment:
| Q |
33 |
aatgaaatattatcttctttcgatgaccgactcaggctctatgctaccaagcagttaacaaaggtaagct |
102 |
Q |
| |
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||||| ||||| ||||| || |||||||||||||||| |||||| ||||| ||||| |||||||| |||| |
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| T |
30218149 |
aatgagatattgtcttcctttgatgaccgactcaggcactatgccaccaaccagttgacaaaggtgagct |
30218080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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