View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_low_8 (Length: 449)
Name: NF0878_low_8
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 220 - 439
Target Start/End: Original strand, 107307 - 107526
Alignment:
| Q |
220 |
gtcattctttcccaaaagtaatgaaaatacctttgtttttgtgtacgcattgaattttctttggtgtgatgaaaaggcccaattgagatcaaatatggtg |
319 |
Q |
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| T |
107307 |
gtcattctttcccaaaagtaatgaaaatacctttgtttttgtgtatgcattgaattttctttggtgtgatgaaaaggcccaattgagatcaaatatggtg |
107406 |
T |
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| Q |
320 |
tataagcttctccattattcaactttctaagattgggaggtaccttgtaaatacaacaaataccatgctttgcatccttgatctctttaggaatgtcaat |
419 |
Q |
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| T |
107407 |
tataagcttctccattattcaactttctaagattgggaggtaccttgtaaatacaacaaataccatgctttgcatccttgatctctttaggaatgtcaat |
107506 |
T |
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| Q |
420 |
tattatgtcttctatctgtg |
439 |
Q |
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| T |
107507 |
tattatgtcttctatttgtg |
107526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 31 - 155
Target Start/End: Original strand, 107118 - 107242
Alignment:
| Q |
31 |
taatccttttccctttcagattcctttgattttctcaaaaatagctctaagatgaagacagaatctaacatgatcatgtccacaaactcatcatccttga |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
107118 |
taatccttttccctttcagattcctttgattttctcaaaaatagctctaagatgaagacagaatctaacatgatcatgtccacaaactcatcatccttga |
107217 |
T |
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| Q |
131 |
tggtatgatcaaactcaaaatagaa |
155 |
Q |
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| T |
107218 |
tggtatgatcaaactcaaaatagaa |
107242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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