View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0879_high_10 (Length: 260)
Name: NF0879_high_10
Description: NF0879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0879_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 515773 - 515938
Alignment:
| Q |
1 |
cctccgtcagctgaaaattgtaatggagttttcatttcgtatgattttcttgatcggaggaagggatttcctcgggtcaagaatgtcacggcacaatctt |
100 |
Q |
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| T |
515773 |
cctccgtcagctgaaaattgtaatggagttttcatttcgtatgattttcttgatcggaggaagggatttcctcgggtcaagaatgtcacggcacaatctt |
515872 |
T |
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| Q |
101 |
ggtcctttaatgcaaccgcaacagttctcaacacaggaaaagatgtacttaaagcatggaaattgt |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
515873 |
ggtcctttaatgcaaccgcaacagttctcaacacaggaaaagatgtacttaaagcatggaaattgt |
515938 |
T |
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