View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0879_high_11 (Length: 251)
Name: NF0879_high_11
Description: NF0879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0879_high_11 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 69 - 251
Target Start/End: Complemental strand, 38596320 - 38596138
Alignment:
| Q |
69 |
attatccagcctcttcctttgatcgcggaaggcagagtctagatgattatttgtgggtataatacataaaagtcaaccattcatcatcatttgatgtaag |
168 |
Q |
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| T |
38596320 |
attatccagcctcttcctttgatcacggaaggcagagtcttgatgattatttgtgggtataatacataaaactcaaccattcatcatcatctgatgtaag |
38596221 |
T |
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| Q |
169 |
cttatagtctgatgaccatgtctataactctagaaagcttatcctttgatgatcaattatgctttccctcaaaaagatcaaat |
251 |
Q |
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| T |
38596220 |
cttattgtctgatgaccatgtctataactctagaaagcttatcctttgatgatcaattatgctttccctcaaaaatatcaaat |
38596138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 38596356 - 38596318
Alignment:
| Q |
6 |
ctccaagaatatgagaatgaagtatcttataaaagcatt |
44 |
Q |
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| T |
38596356 |
ctccaagaatgtgagaatgaagtatcttataaaagcatt |
38596318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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