View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0879_high_16 (Length: 202)
Name: NF0879_high_16
Description: NF0879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0879_high_16 |
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| [»] scaffold0094 (1 HSPs) |
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Alignment Details
Target: scaffold0094 (Bit Score: 135; Significance: 1e-70; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 29 - 183
Target Start/End: Complemental strand, 7314 - 7160
Alignment:
| Q |
29 |
aatttccagactgataaaaataaatttcctaacaaatttatgcttcttactgtgtataaaaggcctgattgtccaaatctatgcttcaaaaaacataaaa |
128 |
Q |
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| T |
7314 |
aattttcagactgataaaaataaatttcctaacaagtttatgcttcttactgtgtataaaaggcctgattgtccaaatctatgcttaaaaaaacataaaa |
7215 |
T |
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| Q |
129 |
gtcctaatacagatccaactttattccaatggaaacgtatacaattcactttcat |
183 |
Q |
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| T |
7214 |
gtcctaatacaggtccaactttattccaatggaaacttatacaattcactttcat |
7160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 17217980 - 17218104
Alignment:
| Q |
25 |
aacaaatttccagactgataaaaataaatttcctaacaaatttatgcttcttactgtgtataaaaggcctgattgtccaaatctatgcttcaaaaaacat |
124 |
Q |
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| T |
17217980 |
aacaaatatctagactgataaaaataaatttcctaacaaatttatgcttcttactatgtataaaaggcctgattgtccaaatttatgcttcaaaaaacat |
17218079 |
T |
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| Q |
125 |
aaaagtcctaatacagatccaactt |
149 |
Q |
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| T |
17218080 |
aaaagtcctgatacaggtccaactt |
17218104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 8e-26; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 24458377 - 24458436
Alignment:
| Q |
44 |
aaaaataaatttcctaacaaatttatgcttcttactgtgtataaaaggcctgattgtcca |
103 |
Q |
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| T |
24458377 |
aaaaataaatttcctaacaaatttatgcttcttactgtgtataaaaggcctgattgtcca |
24458436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 24476584 - 24476639
Alignment:
| Q |
48 |
ataaatttcctaacaaatttatgcttcttactgtgtataaaaggcctgattgtcca |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24476584 |
ataaatttcctaacaaatttatgcttcttactgtgtataaaaggcctgattatcca |
24476639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 24458579 - 24458651
Alignment:
| Q |
113 |
ttcaaaaaacataaaagtcctaatacagatccaactttattc--caatggaaacgtatacaattcactttcat |
183 |
Q |
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||||||||||||||||||| |||||||| |||| |||||||| ||||| |||| |||||||||||||||||| |
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| T |
24458579 |
ttcaaaaaacataaaagtcgtaatacaggtccacctttattccacaatgcaaacatatacaattcactttcat |
24458651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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