View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0879_high_6 (Length: 296)
Name: NF0879_high_6
Description: NF0879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0879_high_6 |
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| [»] scaffold0236 (1 HSPs) |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 5569556 - 5569644
Alignment:
| Q |
156 |
ttaagggaatttgtaggtagacagaccatatctgtctatgtggaaatcaaagtgtaaaacaggcagtaattcagtcttatttaaagcaa |
244 |
Q |
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| T |
5569556 |
ttaagggaatttgtaggtagacagaccatatctgtctctgtggaaatcaaagtgtaaaacaggcagtaattcagtcttatttaaagcaa |
5569644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 5569403 - 5569462
Alignment:
| Q |
3 |
tccaactaggttgacaacccgatgaaccttcatcctatgccgtcaatctcaataattttt |
62 |
Q |
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| T |
5569403 |
tccaactaggttgataacccgatgaaccttcatcctatgccgtcaatctcaataattttt |
5569462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 9266106 - 9266154
Alignment:
| Q |
6 |
aactaggttgacaacccgatgaaccttcatcctatgccgtcaatctcaa |
54 |
Q |
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| T |
9266106 |
aactaggtagacaacccgaagaacctccatcctatgccgccaaactcaa |
9266154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 6264 - 6231
Alignment:
| Q |
198 |
gaaatcaaagtgtaaaacaggcagtaattcagtc |
231 |
Q |
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| T |
6264 |
gaaatcaaagtgtaaaacaggcagtaattcagtc |
6231 |
T |
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Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 12888 - 12937
Alignment:
| Q |
5 |
caactaggttgacaacccgatgaaccttcatcctatgccgtcaatctcaa |
54 |
Q |
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| T |
12888 |
caactaggttgacatcccgaagaacctccatcatatgccgtcaatctcaa |
12937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 2040108 - 2040149
Alignment:
| Q |
4 |
ccaactaggttgacaacccgatgaaccttcatcctatgccgt |
45 |
Q |
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| T |
2040108 |
ccaactaggttggcatcccgatgaaccttcatcctatgccgt |
2040149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 3399581 - 3399625
Alignment:
| Q |
4 |
ccaactaggttgacaacccgatgaaccttcatcctatgccgtcaa |
48 |
Q |
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| T |
3399581 |
ccaactaggttggcaccccgagaaaccttcatcctatgccgtcaa |
3399625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 3914275 - 3914325
Alignment:
| Q |
4 |
ccaactaggttgacaacccgatgaaccttcatcctatgccgtcaatctcaa |
54 |
Q |
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|||||||||||| || |||||||||| ||||||||| ||||||||||||| |
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| T |
3914275 |
ccaactaggttggcaccccgatgaactctcatcctataccgtcaatctcaa |
3914325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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