View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0879_low_18 (Length: 250)

Name: NF0879_low_18
Description: NF0879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0879_low_18
NF0879_low_18
[»] chr5 (10 HSPs)
chr5 (13-250)||(33109970-33110207)
chr5 (26-90)||(25992242-25992306)
chr5 (13-85)||(14302216-14302288)
chr5 (26-90)||(33258665-33258729)
chr5 (25-78)||(10174924-10174977)
chr5 (13-69)||(7682806-7682862)
chr5 (13-93)||(26045736-26045816)
chr5 (13-54)||(7195073-7195114)
chr5 (13-89)||(21398092-21398168)
chr5 (201-241)||(33110252-33110292)
[»] chr8 (4 HSPs)
chr8 (13-93)||(10248339-10248419)
chr8 (13-93)||(43312411-43312491)
chr8 (13-93)||(12197847-12197927)
chr8 (13-93)||(12442275-12442355)
[»] chr2 (7 HSPs)
chr2 (22-93)||(41086571-41086642)
chr2 (13-78)||(12343061-12343126)
chr2 (24-76)||(4974990-4975042)
chr2 (24-76)||(4992898-4992950)
chr2 (13-93)||(10173352-10173432)
chr2 (13-93)||(1269709-1269787)
chr2 (13-74)||(7696209-7696270)
[»] chr4 (8 HSPs)
chr4 (12-93)||(38637005-38637084)
chr4 (14-77)||(48098580-48098641)
chr4 (13-93)||(22810933-22811011)
chr4 (13-93)||(39420808-39420888)
chr4 (13-93)||(49747757-49747836)
chr4 (13-78)||(19311138-19311203)
chr4 (13-78)||(25753417-25753482)
chr4 (22-93)||(16832800-16832872)
[»] chr3 (6 HSPs)
chr3 (26-90)||(28937498-28937562)
chr3 (26-90)||(14755047-14755111)
chr3 (13-79)||(48893125-48893191)
chr3 (22-78)||(33143732-33143788)
chr3 (23-90)||(25594331-25594396)
chr3 (43-85)||(37123618-37123660)
[»] chr1 (9 HSPs)
chr1 (13-93)||(11439791-11439871)
chr1 (17-92)||(4430921-4430997)
chr1 (23-93)||(32882595-32882665)
chr1 (32-92)||(9313097-9313157)
chr1 (13-93)||(16149004-16149083)
chr1 (13-93)||(34775100-34775180)
chr1 (13-93)||(10785234-10785312)
chr1 (13-93)||(41126262-41126342)
chr1 (13-62)||(46768435-46768484)
[»] chr6 (1 HSPs)
chr6 (23-93)||(20701583-20701653)
[»] scaffold0200 (1 HSPs)
scaffold0200 (13-78)||(19622-19687)
[»] chr7 (3 HSPs)
chr7 (13-93)||(1321023-1321104)
chr7 (13-78)||(24324570-24324636)
chr7 (17-93)||(6716515-6716589)
[»] scaffold1384 (1 HSPs)
scaffold1384 (13-93)||(1428-1508)
[»] scaffold0050 (1 HSPs)
scaffold0050 (8-78)||(36951-37020)
[»] scaffold0119 (1 HSPs)
scaffold0119 (13-93)||(41915-41993)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 33109970 - 33110207
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtcaattaaatgtgagttagtcg 112  Q
    |||||||| |||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33109970 aaaatacacgtcatcacctaaaacaaaccccttcacgaaaacgaccactgtaaaaacgatatccaataccacccatcgtcaattaaatgtgagttagtcg 33110069  T
Q  113 aatcttgctaggtctacaaaggtcatgggatgtaagaatcactcaaaacttagcagaaaacttgacaatttgacattttactcatgttcatgtttgtagc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33110070 aatcttgctaggtctacaaaggtcatgggatgtaagaatcactcaaaacttagcagaaaacttgacaatttgacattttactcatgttcatgtttgtagc 33110169  T
Q  213 gccactaactcaagtagctatgagcatgggtgttccat 250  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  33110170 gccactaaatcaagtagctaagagcatgggtgttccat 33110207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 25992306 - 25992242
Alignment:
Q  26 ccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcg 90  Q
    |||||||||||| |||||||||| ||| | ||||| |||||||||||||||||||||||||||||    
T  25992306 ccacctaaaacagaccccttcacgaaagcaaccactgtaaaaacgatatccaataccacccatcg 25992242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 14302216 - 14302288
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacc 85  Q
    |||||||| |||||||||||||||| |  ||||| | ||||||||||  ||||||||||||||||| ||||||    
T  14302216 aaaatacacgtcaccacctaaaacagattccttcgcgaaaacgaccaatgtaaaaacgatatccaacaccacc 14302288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 33258665 - 33258729
Alignment:
Q  26 ccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcg 90  Q
    |||||||||||| | | |||||| ||| ||||||| |||||||||||||||||||||| ||||||    
T  33258665 ccacctaaaacagatctcttcacgaaagcgaccactgtaaaaacgatatccaataccatccatcg 33258729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 10174977 - 10174924
Alignment:
Q  25 accacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaa 78  Q
    ||||||||||||| || |||||  |||||||||||| |||||||||||||||||    
T  10174977 accacctaaaacagactccttctaaaaaacgaccacggtaaaaacgatatccaa 10174924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 7682862 - 7682806
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaac 69  Q
    ||||||||  ||||||||||||| | || | ||||||||||||||||||||||||||    
T  7682862 aaaatacacatcaccacctaaaatagactctttcacaaaaacgaccaccgtaaaaac 7682806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 26045736 - 26045816
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 93  Q
    ||||| || |||||||||||||||| ||  |||||  |||| |||||| |||||||||| |||||| ||| ||||||||||    
T  26045736 aaaattcacgtcaccacctaaaacagacttcttcatgaaaatgaccacggtaaaaacgaaatccaacacctcccatcgtca 26045816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 7195073 - 7195114
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaac 54  Q
    |||||||| |||||||||||||||| || |||||||||||||    
T  7195073 aaaatacacgtcaccacctaaaacagactccttcacaaaaac 7195114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 21398092 - 21398168
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatc 89  Q
    |||||||| ||||||| |||||||| || ||||||| ||||| |||   |||||||||||||||   ||||||||||    
T  21398092 aaaatacacgtcaccatctaaaacagacgccttcacgaaaacaacctttgtaaaaacgatatcccgcaccacccatc 21398168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 33110252 - 33110292
Alignment:
Q  201 catgtttgtagcgccactaactcaagtagctatgagcatgg 241  Q
    |||||||||||| ||||||||  ||||||||||||||||||    
T  33110252 catgtttgtagcaccactaaccgaagtagctatgagcatgg 33110292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 10248339 - 10248419
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 93  Q
    |||||||| ||||||||||||||||||| ||||||| ||||||||||| |||||||||| |||| | | ||||||||||||    
T  10248339 aaaatacacgtcaccacctaaaacaaactccttcacgaaaacgaccactgtaaaaacgacatcccacaacacccatcgtca 10248419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 43312411 - 43312491
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 93  Q
    |||||||||||||||||||||| || || ||| ||||||||||||||| ||||||||||||||| | ||||  ||||||||    
T  43312411 aaaatacatgtcaccacctaaatcagactcctacacaaaaacgaccactgtaaaaacgatatcccacaccatacatcgtca 43312491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 12197847 - 12197927
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 93  Q
    |||||||| ||||||||||| |||| || ||||||  || ||||||||   ||||||||||||||  ||||||| ||||||    
T  12197847 aaaatacacgtcaccacctacaacagacgccttcatgaacacgaccactaaaaaaacgatatccagcaccacccgtcgtca 12197927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 12442275 - 12442355
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 93  Q
    |||||||| ||||||||||| |||| || ||||||  || ||||||||   ||||||||||||||  ||||||| ||||||    
T  12442275 aaaatacacgtcaccacctacaacagacgccttcatgaacacgaccactaaaaaaacgatatccagcaccacccgtcgtca 12442355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 41086571 - 41086642
Alignment:
Q  22 gtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 93  Q
    |||||||||||||||| ||||||| || ||| |||||||  |||||||||||||||||||||||||||||||    
T  41086571 gtcaccacctaaaacagaccccttaacgaaagcgaccactctaaaaacgatatccaataccacccatcgtca 41086642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 12343126 - 12343061
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaa 78  Q
    |||||||| |||||||||||||||| || ||||||| ||||||||| | |||||||||||||||||    
T  12343126 aaaatacacgtcaccacctaaaacagactccttcacgaaaacgacctctgtaaaaacgatatccaa 12343061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 4975042 - 4974990
Alignment:
Q  24 caccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatcc 76  Q
    |||||||||||||| ||  |||||| ||||||||||| |||||||||||||||    
T  4975042 caccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 4974990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 4992950 - 4992898
Alignment:
Q  24 caccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatcc 76  Q
    |||||||||||||| ||  |||||| ||||||||||| |||||||||||||||    
T  4992950 caccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 4992898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 10173352 - 10173432
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 93  Q
    ||||||||||||||  ||||||||| ||  |||||  |||||||| || ||||||||||||| ||| ||||| ||||||||    
T  10173352 aaaatacatgtcacggcctaaaacagacgtcttcatgaaaacgactactgtaaaaacgatatacaacaccactcatcgtca 10173432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 1269787 - 1269709
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 93  Q
    ||||||||  |||||||||||||||||  ||||| |  |||||||| |  |||||||||||||||  ||||||||||||||    
T  1269787 aaaatacacatcaccacctaaaacaaattccttctcggaaacgacctctataaaaacgatatcca--accacccatcgtca 1269709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 7696270 - 7696209
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatat 74  Q
    ||||||||  ||||||||||||| |||| ||||||| ||||||||||  ||||||| |||||    
T  7696270 aaaatacacatcaccacctaaaataaactccttcacgaaaacgaccaatgtaaaaatgatat 7696209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 38637005 - 38637084
Alignment:
Q  12 gaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 93  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| ||| | ||||||| ||||||||  ||||||||||||||    
T  38637005 gaaaatacatgtcaccacctaaaacaaactccttcacgaaaacaaccgctgtaaaaatgatatcca--accacccatcgtca 38637084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 48098641 - 48098580
Alignment:
Q  14 aaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatcca 77  Q
    ||||||| ||||||||||||||||  | | ||||||||||||||||| ||||||||||||||||    
T  48098641 aaatacacgtcaccacctaaaaca--ctctttcacaaaaacgaccactgtaaaaacgatatcca 48098580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 22810933 - 22811011
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 93  Q
    |||||||| |||||| ||||||||| ||  |||||| ||| ||||||| |||||||||||||||  ||||| |||||||||    
T  22810933 aaaatacacgtcacctcctaaaacagactgcttcacgaaaccgaccactgtaaaaacgatatcc--taccatccatcgtca 22811011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 39420808 - 39420888
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 93  Q
    |||||||| ||||||| |||||||  || ||| ||| | ||| ||||||||| ||||||||||||| ||||||| ||||||    
T  39420808 aaaatacacgtcaccatctaaaactgactcctacacgagaacaaccaccgtataaacgatatccaacaccacccgtcgtca 39420888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 49747836 - 49747757
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 93  Q
    ||||| ||||||||||||||||||| || | ||||| ||||||||||  |||||||||| |||||| ||| ||||| ||||    
T  49747836 aaaattcatgtcaccacctaaaacagactctttcacgaaaacgaccattgtaaaaacga-atccaacaccgcccattgtca 49747757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 19311138 - 19311203
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaa 78  Q
    |||||||| |||||||||  ||||| |  ||||||| ||||||| ||| |||||||||||||||||    
T  19311138 aaaatacacgtcaccaccataaacagattccttcacgaaaacgagcactgtaaaaacgatatccaa 19311203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 25753482 - 25753417
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaa 78  Q
    |||||||| |||| |||||||||||||| ||||||| |||| | |||| |||||| || |||||||    
T  25753482 aaaatacaagtcatcacctaaaacaaactccttcacgaaaagggccactgtaaaatcggtatccaa 25753417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 16832800 - 16832872
Alignment:
Q  22 gtcaccacctaaaacaaaccccttcac-aaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 93  Q
    |||||||||||||||| |  ||| ||| |||||||||| | ||||||| ||||||||| ||||||| ||||||    
T  16832800 gtcaccacctaaaacatattcctgcacgaaaaacgaccgctgtaaaaaagatatccaacaccacccgtcgtca 16832872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 28937498 - 28937562
Alignment:
Q  26 ccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcg 90  Q
    |||||||||||| |||||||||| |||  |||||| |||||||||||||||||||||||||||||    
T  28937498 ccacctaaaacagaccccttcacgaaagtgaccactgtaaaaacgatatccaataccacccatcg 28937562  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 14755047 - 14755111
Alignment:
Q  26 ccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcg 90  Q
    |||||||||||| |||||||||| ||| ||||||  |||||||||||||| ||||||| ||||||    
T  14755047 ccacctaaaacagaccccttcacgaaagcgaccattgtaaaaacgatatctaataccatccatcg 14755111  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 48893125 - 48893191
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaat 79  Q
    ||||||||||||||||||||||| | || |||| ||||||||||  || |||||||| |||||||||    
T  48893125 aaaatacatgtcaccacctaaaagagactcctttacaaaaacgattacggtaaaaacaatatccaat 48893191  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 33143732 - 33143788
Alignment:
Q  22 gtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaa 78  Q
    ||||||||||||||||||| ||||||| ||||| ||||| | | |||||||||||||    
T  33143732 gtcaccacctaaaacaaactccttcacgaaaaccaccactgaacaaacgatatccaa 33143788  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 25594331 - 25594396
Alignment:
Q  23 tcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcg 90  Q
    |||| |||||||||| || ||||||||||| ||||||| | ||||||||||||||| |||||||||||    
T  25594331 tcactacctaaaacatactccttcacaaaa-cgaccactgaaaaaacgatatccaa-accacccatcg 25594396  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 37123660 - 37123618
Alignment:
Q  43 cttcacaaaaacgaccaccgtaaaaacgatatccaataccacc 85  Q
    |||||| ||||||||||| ||||||||||||||||| ||||||    
T  37123660 cttcacgaaaacgaccactgtaaaaacgatatccaacaccacc 37123618  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 11439791 - 11439871
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 93  Q
    |||||||| |||||||||||||||| | |||||||| ||| | ||||||||||||| ||||||||| |||||  |||||||    
T  11439791 aaaatacacgtcaccacctaaaacagatcccttcacgaaagcaaccaccgtaaaaatgatatccaacaccacttatcgtca 11439871  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 4430997 - 4430921
Alignment:
Q  17 tacatgtcaccacctaaaacaaaccccttcacaaaaa-cgaccaccgtaaaaacgatatccaataccacccatcgtc 92  Q
    |||| ||||||||||| ||||||| ||||| |||||| | ||||||||||||||||||||||| |||| || |||||    
T  4430997 tacacgtcaccacctagaacaaactccttcgcaaaaaacaaccaccgtaaaaacgatatccaaaaccatccgtcgtc 4430921  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 32882665 - 32882595
Alignment:
Q  23 tcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 93  Q
    ||||| ||||||||  || ||||||| ||||||| ||| ||||| ||||||||||| ||||||||||||||    
T  32882665 tcaccgcctaaaactgactccttcacgaaaacgagcactgtaaacacgatatccaacaccacccatcgtca 32882595  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 9313097 - 9313157
Alignment:
Q  32 aaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtc 92  Q
    |||||| |||||||||||||| | ||||  || |||||||||||||||||||| |||||||    
T  9313097 aaaacataccccttcacaaaagcaaccattgttaaaacgatatccaataccactcatcgtc 9313157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 16149083 - 16149004
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 93  Q
    |||||||| |||||||||||||||| || ||||||   ||||||| || | ||||||||||||||| | ||||||||||||    
T  16149083 aaaatacacgtcaccacctaaaacagacaccttcatgtaaacgactactg-aaaaacgatatccaaaagcacccatcgtca 16149004  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 34775180 - 34775100
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 93  Q
    |||||||| |||| ||||||||||| || ||||||| |||||||| || |||||||||| |||| | || |||| ||||||    
T  34775180 aaaatacacgtcatcacctaaaacagactccttcacgaaaacgacaactgtaaaaacgaaatcccacactacccgtcgtca 34775100  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 10785234 - 10785312
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 93  Q
    ||||||||||| | ||| ||||||| || ||||||| ||||||||  | | ||||||||||||||  ||||||||||||||    
T  10785234 aaaatacatgttatcacttaaaacagactccttcacgaaaacgacatctgaaaaaacgatatcca--accacccatcgtca 10785312  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 41126262 - 41126342
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaac-gaccaccgtaaaaacgatatccaataccacccatcgtca 93  Q
    ||||||||| ||||||||||||||| || | ||||| |||||  ||||| || |||||||||||||  ||||||||||||||    
T  41126262 aaaatacatatcaccacctaaaacagacgcattcacgaaaacaaaccactgt-aaaacgatatccatcaccacccatcgtca 41126342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 46768484 - 46768435
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccg 62  Q
    ||||| || |||||||||||||||| || ||||||| |||||||||||||    
T  46768484 aaaattcacgtcaccacctaaaacagactccttcacgaaaacgaccaccg 46768435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 20701583 - 20701653
Alignment:
Q  23 tcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 93  Q
    |||||||||| |||| |||| ||||| ||| | ||||| |||||||||||||||||||| |||||||||||    
T  20701583 tcaccacctataacagacccattcacgaaagcaaccactgtaaaaacgatatccaatactacccatcgtca 20701653  T

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Target: scaffold0200 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 19687 - 19622
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaa 78  Q
    ||||||||  |||||||||||||||||| ||||| ||||||||||| |  ||||||||||||||||    
T  19687 aaaatacacatcaccacctaaaacaaactccttctcaaaaacgacctctataaaaacgatatccaa 19622  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 1321104 - 1321023
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaacccctt-cacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 93  Q
    ||||||||  ||||||||||||||| ||||||| ||| ||| | ||||| |||||||||||||| |||||||| ||||||||    
T  1321104 aaaatacacatcaccacctaaaacagacccctttcacgaaagcaaccactgtaaaaacgatatctaataccactcatcgtca 1321023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 24324570 - 24324636
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcac-aaaaacgaccaccgtaaaaacgatatccaa 78  Q
    |||||||| |||||||| ||||||| || ||||||| |||||||||||  |||| ||||||||||||    
T  24324570 aaaatacacgtcaccacttaaaacagactccttcacgaaaaacgaccattgtaagaacgatatccaa 24324636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 6716515 - 6716589
Alignment:
Q  17 tacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 93  Q
    |||||| ||||||||||||||  | ||||||| ||||||||||| ||||||||| ||||  | ||||||||| ||||    
T  6716515 tacatgacaccacctaaaaca--ctccttcacgaaaacgaccactgtaaaaacggtatctcacaccacccattgtca 6716589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 1428 - 1508
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 93  Q
    |||||||| |||||||||||||||  || ||| ||| | ||| ||||| ||||||||||||||||| ||||| | ||||||    
T  1428 aaaatacacgtcaccacctaaaactgactcctacacgagaacaaccactgtaaaaacgatatccaacaccacacgtcgtca 1508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 37020 - 36951
Alignment:
Q  8 ccaagaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaa 78  Q
    |||| |||||||| |||||||||||||||| || |||||||  |||| ||||| |||||||||| ||||||    
T  37020 ccaacaaaatacacgtcaccacctaaaacagactccttcac-gaaaccaccactgtaaaaacgacatccaa 36951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 41915 - 41993
Alignment:
Q  13 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 93  Q
    ||||||||  |||||||||||||||||  ||||| |  |||||||| |  |||||||||||||||  ||||||||||||||    
T  41915 aaaatacacatcaccacctaaaacaaattccttctcggaaacgacctctataaaaacgatatcca--accacccatcgtca 41993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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