View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0879_low_20 (Length: 246)
Name: NF0879_low_20
Description: NF0879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0879_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 34857358 - 34857146
Alignment:
| Q |
19 |
aggtcagaagtatcatatacacagttgtatagatgaaataaatagacatttaaagaatcgcggtctctggatgatgttggacaactttttcctctgttgt |
118 |
Q |
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| T |
34857358 |
aggtcagaagtatcatatacacagttgtatagatgaaataaatagacatttaaagaatcgcggtctctggatgatgttggacaactttttcctctgttgt |
34857259 |
T |
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| Q |
119 |
gcccttcaaaaggagaagggggtggaatatatgcaatagtaatcactaacagttctataatatgaatatcccttgactattaaagttggtaactgttatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34857258 |
gcccttcaaaaggagaagggggtggaatatatgcaatagtaatccctaacagttctataatatgaatatcccttgactattaaagtttgtaactgttatg |
34857159 |
T |
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| Q |
219 |
cagcctacctatg |
231 |
Q |
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||||||||||||| |
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| T |
34857158 |
cagcctacctatg |
34857146 |
T |
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