View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0879_low_8 (Length: 300)

Name: NF0879_low_8
Description: NF0879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0879_low_8
NF0879_low_8
[»] chr1 (14 HSPs)
chr1 (70-299)||(23486143-23486372)
chr1 (70-221)||(14968956-14969109)
chr1 (75-124)||(11105088-11105137)
chr1 (89-124)||(10153715-10153750)
chr1 (89-124)||(21684426-21684461)
chr1 (101-221)||(9558566-9558687)
chr1 (89-122)||(18515676-18515709)
chr1 (91-124)||(25399051-25399084)
chr1 (89-124)||(2266770-2266805)
chr1 (89-124)||(16235671-16235706)
chr1 (89-124)||(23036869-23036904)
chr1 (89-124)||(23917510-23917545)
chr1 (89-124)||(29215477-29215512)
chr1 (188-226)||(19965705-19965743)
[»] chr2 (12 HSPs)
chr2 (76-218)||(26704219-26704362)
chr2 (89-220)||(24109791-24109923)
chr2 (91-179)||(24109604-24109692)
chr2 (184-221)||(22268357-22268394)
chr2 (91-124)||(27939662-27939695)
chr2 (89-124)||(9015756-9015791)
chr2 (89-124)||(20152388-20152423)
chr2 (89-124)||(28701600-28701635)
chr2 (89-124)||(40202779-40202814)
chr2 (156-213)||(13112773-13112832)
chr2 (89-121)||(33240362-33240394)
chr2 (89-121)||(33248283-33248315)
[»] chr3 (20 HSPs)
chr3 (88-247)||(19264248-19264407)
chr3 (89-124)||(16305589-16305624)
chr3 (89-123)||(7921143-7921177)
chr3 (75-124)||(31779392-31779441)
chr3 (89-121)||(17769434-17769466)
chr3 (89-121)||(19070735-19070767)
chr3 (89-124)||(6175019-6175054)
chr3 (89-124)||(12726672-12726707)
chr3 (89-124)||(18122055-18122090)
chr3 (89-124)||(29855091-29855126)
chr3 (89-124)||(38178086-38178121)
chr3 (89-124)||(40799579-40799614)
chr3 (89-124)||(47207386-47207421)
chr3 (89-124)||(47405864-47405899)
chr3 (91-124)||(10851492-10851525)
chr3 (91-124)||(17697292-17697325)
chr3 (89-122)||(19658416-19658449)
chr3 (89-122)||(22766958-22766991)
chr3 (89-121)||(19643842-19643874)
chr3 (88-116)||(47597253-47597281)
[»] scaffold0010 (1 HSPs)
scaffold0010 (70-222)||(135745-135898)
[»] chr5 (10 HSPs)
chr5 (72-221)||(19903208-19903359)
chr5 (88-218)||(22185628-22185760)
chr5 (70-212)||(6037692-6037835)
chr5 (89-124)||(33022345-33022380)
chr5 (89-124)||(34637251-34637286)
chr5 (172-221)||(12860199-12860249)
chr5 (89-123)||(25740791-25740825)
chr5 (89-122)||(17263147-17263180)
chr5 (184-221)||(19642411-19642448)
chr5 (184-220)||(20689776-20689812)
[»] scaffold0340 (1 HSPs)
scaffold0340 (89-124)||(17643-17678)
[»] scaffold0043 (1 HSPs)
scaffold0043 (89-124)||(2218-2253)
[»] chr8 (6 HSPs)
chr8 (89-124)||(15598428-15598463)
chr8 (89-124)||(17687655-17687690)
chr8 (91-124)||(24634992-24635025)
chr8 (89-124)||(1210182-1210217)
chr8 (75-121)||(34062624-34062670)
chr8 (91-124)||(23264067-23264100)
[»] chr7 (11 HSPs)
chr7 (89-124)||(18362011-18362046)
chr7 (184-221)||(8259044-8259081)
chr7 (91-124)||(10254770-10254803)
chr7 (89-124)||(2499716-2499751)
chr7 (89-124)||(9762363-9762398)
chr7 (89-124)||(15467595-15467630)
chr7 (89-124)||(20598018-20598053)
chr7 (89-124)||(21283817-21283852)
chr7 (89-122)||(11376516-11376549)
chr7 (184-220)||(5075780-5075816)
chr7 (89-121)||(9802858-9802890)
[»] chr4 (11 HSPs)
chr4 (89-124)||(13693476-13693511)
chr4 (89-124)||(24619326-24619361)
chr4 (189-250)||(15521983-15522043)
chr4 (91-124)||(18473708-18473741)
chr4 (93-220)||(8860257-8860385)
chr4 (89-124)||(8105315-8105350)
chr4 (89-124)||(15193358-15193393)
chr4 (164-222)||(20243612-20243671)
chr4 (89-124)||(29121042-29121077)
chr4 (145-222)||(11779552-11779628)
chr4 (91-124)||(32468922-32468955)
[»] chr6 (11 HSPs)
chr6 (184-222)||(6561378-6561416)
chr6 (70-166)||(23601253-23601349)
chr6 (89-124)||(16265582-16265617)
chr6 (89-124)||(20731136-20731171)
chr6 (89-124)||(22801822-22801857)
chr6 (89-124)||(25595859-25595894)
chr6 (89-124)||(31127740-31127775)
chr6 (89-124)||(31720053-31720088)
chr6 (187-221)||(21946554-21946588)
chr6 (91-124)||(21624772-21624805)
chr6 (89-124)||(16915108-16915144)
[»] scaffold0859 (1 HSPs)
scaffold0859 (89-124)||(2665-2700)
[»] scaffold0479 (1 HSPs)
scaffold0479 (89-124)||(9652-9687)
[»] scaffold0351 (1 HSPs)
scaffold0351 (89-124)||(9421-9456)
[»] scaffold0171 (1 HSPs)
scaffold0171 (89-124)||(27823-27858)
[»] scaffold0023 (1 HSPs)
scaffold0023 (89-124)||(103255-103290)
[»] scaffold0003 (1 HSPs)
scaffold0003 (89-124)||(90449-90484)
[»] scaffold0311 (1 HSPs)
scaffold0311 (89-123)||(19758-19792)
[»] scaffold0161 (2 HSPs)
scaffold0161 (91-124)||(10502-10535)
scaffold0161 (91-124)||(15166-15199)


Alignment Details
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 70 - 299
Target Start/End: Complemental strand, 23486372 - 23486143
Alignment:
Q  70 atagtgcacaaacagttcgagaatttcttataaactttcatatcttagaaattctcaaatctcataatccattcaaactttattgtattatacctctaat 169  Q
    |||||||||||||| ||| | |||||||||||||||||||||||||||||||||| || ||||||| | ||||| ||||||||||||||| |||||||||    
T  23486372 atagtgcacaaacacttcaataatttcttataaactttcatatcttagaaattctgaagtctcatagttcattcgaactttattgtattacacctctaat 23486273  T
Q  170 ggtatatcaattataaatcaaacaatcttttgtttgattaagttagattgtaataagagtctttcttctgtgattgagcaaagggtttattttgcttgtg 269  Q
     |||||| || | |||||||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||| ||| |  || | |||||||||    
T  23486272 tgtatattaagtgtaaatcaaacaatcttttatttgataaagttatattgtaataagagtctttcttttgtgattgagaaaatgaattttcttgcttgtg 23486173  T
Q  270 tgtgggaaatttctaatcttagtgattata 299  Q
    || ||| ||||| |||||||||||||||||    
T  23486172 tgaggggaatttgtaatcttagtgattata 23486143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 70 - 221
Target Start/End: Original strand, 14968956 - 14969109
Alignment:
Q  70 atagtgcacaaacagttcgagaatttcttataaactttcatatcttagaaattctcaaatctcataatccatt-caaactttattgtattatacctctaa 168  Q
    |||||||||||||| || || |||||||||||||||||||||||||||||||||| || ||||| | ||||||   ||||| ||||||||| |||| | |    
T  14968956 atagtgcacaaacacttagataatttcttataaactttcatatcttagaaattcttaagtctcaaagtccattatgaacttcattgtattacacctttga 14969055  T
Q  169 tggtatatcaattat-aaatcaaacaatcttttgtttgattaagttagattgta 221  Q
    | ||||||||| | | ||| ||||||||||||| ||||||||||||||||||||    
T  14969056 ttgtatatcaagtgtgaaaccaaacaatcttttatttgattaagttagattgta 14969109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 11105137 - 11105088
Alignment:
Q  75 gcacaaacagttcgagaatttcttataaactttcatatcttagaaattct 124  Q
    ||||||||| || || ||||||||||||||||||||||||||||||||||    
T  11105137 gcacaaacacttagataatttcttataaactttcatatcttagaaattct 11105088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 10153750 - 10153715
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    ||||||||||||||||||||||||||||||||||||    
T  10153750 agaatttcttataaactttcatatcttagaaattct 10153715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 21684426 - 21684461
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    ||||||||||||||||||||||||||||||||||||    
T  21684426 agaatttcttataaactttcatatcttagaaattct 21684461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 221
Target Start/End: Original strand, 9558566 - 9558687
Alignment:
Q  101 aaactttcatatcttagaaattctcaaatctcataatccattcaaactttattgtattatacctctaatggtatatcaattataaa-tcaaacaatcttt 199  Q
    |||||||||||||||||||||| | || | ||  | |||||   ||||||||||||||| |||| | |  ||||||||| | |||| |||||||||||||    
T  9558566 aaactttcatatcttagaaatttttaagtgtccaagtccatatgaactttattgtattacacctttgaatgtatatcaagtgtaaaatcaaacaatcttt 9558665  T
Q  200 tgtttgattaagttagattgta 221  Q
    | ||| ||| ||||||||||||    
T  9558666 tatttaattcagttagattgta 9558687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 122
Target Start/End: Complemental strand, 18515709 - 18515676
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaatt 122  Q
    ||||||||||||||||||||||||||||||||||    
T  18515709 agaatttcttataaactttcatatcttagaaatt 18515676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 124
Target Start/End: Complemental strand, 25399084 - 25399051
Alignment:
Q  91 aatttcttataaactttcatatcttagaaattct 124  Q
    ||||||||||||||||||||||||||||||||||    
T  25399084 aatttcttataaactttcatatcttagaaattct 25399051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 2266805 - 2266770
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  2266805 agaatttcttatcaactttcatatcttagaaattct 2266770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 16235671 - 16235706
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  16235671 agaatttcttatcaactttcatatcttagaaattct 16235706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 23036869 - 23036904
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  23036869 agaatttcttatcaactttcatatcttagaaattct 23036904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 23917545 - 23917510
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    ||||||||||||||||| ||||||||||||||||||    
T  23917545 agaatttcttataaactatcatatcttagaaattct 23917510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 29215512 - 29215477
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  29215512 agaatttcttatcaactttcatatcttagaaattct 29215477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 19965705 - 19965743
Alignment:
Q  188 caaacaatcttttgtttgattaagttagattgtaataag 226  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  19965705 caaacaatcttttatttgattaagttagattgtgataag 19965743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 76 - 218
Target Start/End: Complemental strand, 26704362 - 26704219
Alignment:
Q  76 cacaaacagttcgagaatttcttataaactttcatatcttagaaattctcaaatctcataatccattcaaactttattgtattatacctctaatggtata 175  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||  || ||| | | |||||   ||||||| ||||||| || ||| || |||||    
T  26704362 cacaaacactttgagaatttcttataaactttcatatcttagaaattcgtaagtcttagagtccatatgaactttaatgtattacacatctgattgtata 26704263  T
Q  176 tcaa-ttataaatcaaacaatcttttgtttgattaagttagatt 218  Q
    |||| ||  ||| |||||||| |||| |||||||||||||||||    
T  26704262 tcaagtttaaaaccaaacaatattttatttgattaagttagatt 26704219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 89 - 220
Target Start/End: Original strand, 24109791 - 24109923
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattctcaaatctcataatccattcaaactttattgtattatacctctaatggtatatcaattat-aaat 187  Q
    |||||| |||||||||||| |||||||||||||||| || ||||| | || |||  || |||||||||||| |||||| || ||||||||| | | ||||    
T  24109791 agaattccttataaacttttatatcttagaaattcttaagtctcagagtcaattttaattttattgtattacacctctgattgtatatcaagtgtaaaat 24109890  T
Q  188 caaacaatcttttgtttgattaagttagattgt 220  Q
     ||||||| |||| | |||||||||||||||||    
T  24109891 taaacaatattttatatgattaagttagattgt 24109923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 24109604 - 24109692
Alignment:
Q  91 aatttcttataaactttcatatcttagaaattctcaaatctcataatccattcaaactttattgtattatacctctaatggtatatcaa 179  Q
    ||||||||||||||||| |||| ||||||||||| || ||||| | ||||||  || |||||||||||| |||| | || |||||||||    
T  24109604 aatttcttataaacttttatatattagaaattcttaagtctcagagtccatttgaattttattgtattacacctttgattgtatatcaa 24109692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 22268394 - 22268357
Alignment:
Q  184 aaatcaaacaatcttttgtttgattaagttagattgta 221  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  22268394 aaatcaaacaatcttttatttgattaagttagattgta 22268357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 124
Target Start/End: Complemental strand, 27939695 - 27939662
Alignment:
Q  91 aatttcttataaactttcatatcttagaaattct 124  Q
    ||||||||||||||||||||||||||||||||||    
T  27939695 aatttcttataaactttcatatcttagaaattct 27939662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 9015756 - 9015791
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  9015756 agaatttcttatcaactttcatatcttagaaattct 9015791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 20152388 - 20152423
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  20152388 agaatttcttatcaactttcatatcttagaaattct 20152423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 28701600 - 28701635
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  28701600 agaatttcttatcaactttcatatcttagaaattct 28701635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 40202779 - 40202814
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||||||||||||||||||| |||||||    
T  40202779 agaatttcttataaactttcatatcttaaaaattct 40202814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 13112773 - 13112832
Alignment:
Q  156 attatacctctaatggtatatcaattataaatc--aaacaatcttttgtttgattaagtt 213  Q
    ||||| |||||||| ||||||||| | ||||||  |||||||||||| ||||||||||||    
T  13112773 attatgcctctaattgtatatcaagtttaaatctcaaacaatcttttatttgattaagtt 13112832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 33240394 - 33240362
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaat 121  Q
    |||||||||||| ||||||||||||||||||||    
T  33240394 agaatttcttattaactttcatatcttagaaat 33240362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 33248315 - 33248283
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaat 121  Q
    |||||||||||| ||||||||||||||||||||    
T  33248315 agaatttcttattaactttcatatcttagaaat 33248283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 247
Target Start/End: Complemental strand, 19264407 - 19264248
Alignment:
Q  88 gagaatttcttataaactttcatatcttagaaattctcaaatctcataatccattcaaactttattgtattatacctctaatggtatatcaattataaa- 186  Q
    ||||||||||||| ||  |||| |||||||||||| | || ||||| | ||||||  ||  ||||||||||| |||||| || |||||| || | ||||     
T  19264407 gagaatttcttattaatcttcaaatcttagaaatttttaagtctcagagtccatttgaaaattattgtattacacctctgattgtatattaagtgtaaaa 19264308  T
Q  187 tcaaacaatcttttgtttgattaagttagattgtaataagagtctttcttctgtgattgag 247  Q
    |||||||||||||| ||||||||||||||||||| | |||  |||||||| ||||||||||    
T  19264307 tcaaacaatcttttatttgattaagttagattgt-agaagtctctttcttgtgtgattgag 19264248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 16305589 - 16305624
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    ||||||||||||||||||||||||||||||||||||    
T  16305589 agaatttcttataaactttcatatcttagaaattct 16305624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 7921143 - 7921177
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattc 123  Q
    |||||||||||||||||||||||||||||||||||    
T  7921143 agaatttcttataaactttcatatcttagaaattc 7921177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 31779441 - 31779392
Alignment:
Q  75 gcacaaacagttcgagaatttcttataaactttcatatcttagaaattct 124  Q
    ||||||||| ||| ||||||||||||||||||| |||||||| |||||||    
T  31779441 gcacaaacacttcaagaatttcttataaacttttatatcttataaattct 31779392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 17769434 - 17769466
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaat 121  Q
    |||||||||||||||||||||||||||||||||    
T  17769434 agaatttcttataaactttcatatcttagaaat 17769466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 19070735 - 19070767
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaat 121  Q
    |||||||||||||||||||||||||||||||||    
T  19070735 agaatttcttataaactttcatatcttagaaat 19070767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 6175054 - 6175019
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  6175054 agaatttcttatcaactttcatatcttagaaattct 6175019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 12726672 - 12726707
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  12726672 agaatttcttatcaactttcatatcttagaaattct 12726707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 18122055 - 18122090
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  18122055 agaatttcttatcaactttcatatcttagaaattct 18122090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 29855126 - 29855091
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  29855126 agaatttcttatcaactttcatatcttagaaattct 29855091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 38178086 - 38178121
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  38178086 agaatttcttatcaactttcatatcttagaaattct 38178121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 40799614 - 40799579
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  40799614 agaatttcttatcaactttcatatcttagaaattct 40799579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 47207421 - 47207386
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  47207421 agaatttcttatcaactttcatatcttagaaattct 47207386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 47405864 - 47405899
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  47405864 agaatttcttatcaactttcatatcttagaaattct 47405899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 124
Target Start/End: Complemental strand, 10851525 - 10851492
Alignment:
Q  91 aatttcttataaactttcatatcttagaaattct 124  Q
    ||||||||| ||||||||||||||||||||||||    
T  10851525 aatttcttaaaaactttcatatcttagaaattct 10851492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 124
Target Start/End: Complemental strand, 17697325 - 17697292
Alignment:
Q  91 aatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||| |||||||||||||||||||||||    
T  17697325 aatttcttatcaactttcatatcttagaaattct 17697292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 19658416 - 19658449
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaatt 122  Q
    |||||||||||| |||||||||||||||||||||    
T  19658416 agaatttcttatcaactttcatatcttagaaatt 19658449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 22766958 - 22766991
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaatt 122  Q
    |||||||||||| |||||||||||||||||||||    
T  22766958 agaatttcttattaactttcatatcttagaaatt 22766991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 19643842 - 19643874
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaat 121  Q
    |||||||||||| ||||||||||||||||||||    
T  19643842 agaatttcttattaactttcatatcttagaaat 19643874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 47597281 - 47597253
Alignment:
Q  88 gagaatttcttataaactttcatatctta 116  Q
    |||||||||||||||||||||||||||||    
T  47597281 gagaatttcttataaactttcatatctta 47597253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 222
Target Start/End: Complemental strand, 135898 - 135745
Alignment:
Q  70 atagtgcacaaacagttcgagaatttcttataaactttcatatcttagaaattctcaaatctcataatccattcaaactttattgtattatacctctaat 169  Q
    |||| ||| ||||| || ||||| ||||||||||||||||||||||| ||||||  || ||| | | |||||  |||| ||||| ||||| |||||| ||    
T  135898 atagcgcataaacacttagagaaattcttataaactttcatatcttataaattcgtaagtcttagagtccatctaaaccttattttattacacctctgat 135799  T
Q  170 ggtatatcaattataaatc-aaacaatcttttgtttgattaagttagattgtaa 222  Q
     ||||||||| | |||| | ||| |||||||| ||||||||||||| |||||||    
T  135798 tgtatatcaagtgtaaaactaaataatcttttatttgattaagttaaattgtaa 135745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 19903359 - 19903208
Alignment:
Q  72 agtgcacaaacagttcgagaatttcttataaactttcatatcttagaaattctcaaatctcataatccattc-aaactttattgtattatacctctaatg 170  Q
    ||||||||| || || ||||||||||||||||||||||||||||||||||||| || ||| | | | || || ||| ||||||| ||||  ||||| ||     
T  19903359 agtgcacaatcacttagagaatttcttataaactttcatatcttagaaattcttaagtcttagagttcaatctaaattttattg-attactcctctgatc 19903261  T
Q  171 gtatatcaattataaa--tcaaacaatcttttgtttgattaagttagattgta 221  Q
    ||||||||| ||||||   |||| |||||||| ||||||||||||| ||||||    
T  19903260 gtatatcaagtataaaacccaaataatcttttatttgattaagttaaattgta 19903208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 218
Target Start/End: Complemental strand, 22185760 - 22185628
Alignment:
Q  88 gagaatttcttataaactttcatatcttagaaattctcaaatctcataatccattcaaactttattgtattatacctctaatggtatatcaattataaa- 186  Q
    ||||| |||||| ||||||||||||||||||| |||| || | | | | |||||   ||||||||| |||||||||||| || ||||||||| | ||||     
T  22185760 gagaaattcttacaaactttcatatcttagaatttcttaagttttagagtccatctgaactttattctattatacctctgattgtatatcaagtgtaaaa 22185661  T
Q  187 -tcaaacaatcttttgtttgattaagttagatt 218  Q
     || ||||||||||| |||||||||||||||||    
T  22185660 atctaacaatcttttatttgattaagttagatt 22185628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 70 - 212
Target Start/End: Complemental strand, 6037835 - 6037692
Alignment:
Q  70 atagtgcacaaacagttcgagaatttcttataaactttcatatcttagaaattctcaaatctcataatccattcaaactttattgtattatacctctaat 169  Q
    |||| ||||||||| || ||||||||||||||||||||||||| ||| ||||||  || ||| | | ||||||  ||||||||||||||| |||| | ||    
T  6037835 atagcgcacaaacatttagagaatttcttataaactttcatatgttaaaaattcataagtcttagagtccatttgaactttattgtattacacctttgat 6037736  T
Q  170 ggtatatcaattat-aaatcaaacaatcttttgtttgattaagt 212  Q
      |||||||| | | |||||||| | |||||| |||||||||||    
T  6037735 tctatatcaagtgtaaaatcaaatagtcttttatttgattaagt 6037692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 33022380 - 33022345
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  33022380 agaatttcttatcaactttcatatcttagaaattct 33022345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 34637286 - 34637251
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||||||||||||| |||||||||||||    
T  34637286 agaatttcttataaactttcatgtcttagaaattct 34637251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 12860199 - 12860249
Alignment:
Q  172 tatatcaattataaa-tcaaacaatcttttgtttgattaagttagattgta 221  Q
    |||||||| |||||| ||||||| |||||| ||||||||||||||||||||    
T  12860199 tatatcaagtataaaatcaaacagtcttttatttgattaagttagattgta 12860249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 25740825 - 25740791
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattc 123  Q
    |||||||||||| ||||||||||||||||||||||    
T  25740825 agaatttcttatcaactttcatatcttagaaattc 25740791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 17263147 - 17263180
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaatt 122  Q
    |||||||||||| |||||||||||||||||||||    
T  17263147 agaatttcttattaactttcatatcttagaaatt 17263180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 19642411 - 19642448
Alignment:
Q  184 aaatcaaacaatcttttgtttgattaagttagattgta 221  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  19642411 aaatcaaataatcttttatttgattaagttagattgta 19642448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 20689812 - 20689776
Alignment:
Q  184 aaatcaaacaatcttttgtttgattaagttagattgt 220  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  20689812 aaatcaaacaatcttttatttgattaagtttgattgt 20689776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 17678 - 17643
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    ||||||||||||||||||||||||||||||||||||    
T  17678 agaatttcttataaactttcatatcttagaaattct 17643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 2218 - 2253
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    ||||||||||||||||||||||||||||||||||||    
T  2218 agaatttcttataaactttcatatcttagaaattct 2253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 15598463 - 15598428
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    ||||||||||||||||||||||||||||||||||||    
T  15598463 agaatttcttataaactttcatatcttagaaattct 15598428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 17687690 - 17687655
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    ||||||||||||||||||||||||||||||||||||    
T  17687690 agaatttcttataaactttcatatcttagaaattct 17687655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 124
Target Start/End: Complemental strand, 24635025 - 24634992
Alignment:
Q  91 aatttcttataaactttcatatcttagaaattct 124  Q
    ||||||||||||||||||||||||||||||||||    
T  24635025 aatttcttataaactttcatatcttagaaattct 24634992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 1210182 - 1210217
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||||||||||||||| |||||||||||    
T  1210182 agaatttcttataaactttcatatattagaaattct 1210217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 34062624 - 34062670
Alignment:
Q  75 gcacaaacagttcgagaatttcttataaactttcatatcttagaaat 121  Q
    ||||||||| ||  |||||||||||||||||||||||||||| ||||    
T  34062624 gcacaaacacttaaagaatttcttataaactttcatatcttaaaaat 34062670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 23264067 - 23264100
Alignment:
Q  91 aatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||| |||||||||||||||||||||||    
T  23264067 aatttcttatcaactttcatatcttagaaattct 23264100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 18362011 - 18362046
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    ||||||||||||||||||||||||||||||||||||    
T  18362011 agaatttcttataaactttcatatcttagaaattct 18362046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 8259081 - 8259044
Alignment:
Q  184 aaatcaaacaatcttttgtttgattaagttagattgta 221  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  8259081 aaatcaaacaatcttttatttgattaagttagattgta 8259044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 10254770 - 10254803
Alignment:
Q  91 aatttcttataaactttcatatcttagaaattct 124  Q
    ||||||||||||||||||||||||||||||||||    
T  10254770 aatttcttataaactttcatatcttagaaattct 10254803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 2499751 - 2499716
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  2499751 agaatttcttatcaactttcatatcttagaaattct 2499716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 9762398 - 9762363
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    ||||||||||||||||||||| ||||||||||||||    
T  9762398 agaatttcttataaactttcaaatcttagaaattct 9762363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 15467630 - 15467595
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  15467630 agaatttcttatcaactttcatatcttagaaattct 15467595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 20598053 - 20598018
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||| |||||||||||||||||||||||||    
T  20598053 agaatttcttgtaaactttcatatcttagaaattct 20598018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 21283817 - 21283852
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  21283817 agaatttcttatcaactttcatatcttagaaattct 21283852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 122
Target Start/End: Complemental strand, 11376549 - 11376516
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaatt 122  Q
    |||||||||| |||||||||||||||||||||||    
T  11376549 agaatttcttgtaaactttcatatcttagaaatt 11376516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 5075780 - 5075816
Alignment:
Q  184 aaatcaaacaatcttttgtttgattaagttagattgt 220  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  5075780 aaatcaaacaatcttttatttgatcaagttagattgt 5075816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 9802890 - 9802858
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaat 121  Q
    |||||||||||||||||||||| ||||||||||    
T  9802890 agaatttcttataaactttcatttcttagaaat 9802858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 13693511 - 13693476
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    ||||||||||||||||||||||||||||||||||||    
T  13693511 agaatttcttataaactttcatatcttagaaattct 13693476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 24619361 - 24619326
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    ||||||||||||||||||||||||||||||||||||    
T  24619361 agaatttcttataaactttcatatcttagaaattct 24619326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 15521983 - 15522043
Alignment:
Q  189 aaacaatcttttgtttgattaagttagattgtaataagagtctttcttctgtgattgagcaa 250  Q
    |||||||||||| ||||||||||||||||||||| |||  |||||||| | |||||||||||    
T  15521983 aaacaatcttttatttgattaagttagattgtaa-aagtttctttcttgtatgattgagcaa 15522043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 124
Target Start/End: Complemental strand, 18473741 - 18473708
Alignment:
Q  91 aatttcttataaactttcatatcttagaaattct 124  Q
    ||||||||||||||||||||||||||||||||||    
T  18473741 aatttcttataaactttcatatcttagaaattct 18473708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 8860385 - 8860257
Alignment:
Q  93 tttcttataaactttcatatcttagaaattctcaaatctcataatccattcaaactttattgtattatacctctaatggtatatcaattat-aaatcaaa 191  Q
    |||||||||||||||||||||||||||||||| |  ||||| | | | |  |||||||||||| ||| | ||||||| |||||| ||   | ||| ||||    
T  8860385 tttcttataaactttcatatcttagaaattcttatgtctcagagttcgtctaaactttattgtcttacatctctaattgtatattaagagtaaaaccaaa 8860286  T
Q  192 caatcttttgtttgattaagttagattgt 220  Q
    ||||||| | ||  |||||||||||||||    
T  8860285 caatcttctattatattaagttagattgt 8860257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 8105350 - 8105315
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  8105350 agaatttcttatcaactttcatatcttagaaattct 8105315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 15193393 - 15193358
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    ||||||||||||||||||| ||||||||||||||||    
T  15193393 agaatttcttataaacttttatatcttagaaattct 15193358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 20243671 - 20243612
Alignment:
Q  164 tctaatggtatatcaattataaatc-aaacaatcttttgtttgattaagttagattgtaa 222  Q
    |||||| ||||||||| | |||| | |||||||||||| |||||||||||||||||||||    
T  20243671 tctaattgtatatcaagtgtaaaaccaaacaatcttttatttgattaagttagattgtaa 20243612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 29121077 - 29121042
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  29121077 agaatttcttatcaactttcatatcttagaaattct 29121042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 11779628 - 11779552
Alignment:
Q  145 aactttattgtattatacctctaatggtatatcaattataaatcaaacaatcttttgtttgattaagttagattgtaa 222  Q
    ||||||||||||||| |||||||||  |||||||| | |||| | |||||||  || ||||||||| |||||||||||    
T  11779628 aactttattgtattacacctctaattttatatcaagtctaaacctaacaatc-attatttgattaatttagattgtaa 11779552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 32468922 - 32468955
Alignment:
Q  91 aatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||||||||||||||||| |||||||    
T  32468922 aatttcttataaactttcatatcttataaattct 32468955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 6561378 - 6561416
Alignment:
Q  184 aaatcaaacaatcttttgtttgattaagttagattgtaa 222  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  6561378 aaatcaaacaatcttttatttgattaagttagattgtaa 6561416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 23601253 - 23601349
Alignment:
Q  70 atagtgcacaaacagttcgagaatttcttataaactttcatatcttagaaattctcaaatctcataatccattcaaactttattgtattatacctct 166  Q
    |||| |||||| || || |||||||||||| |||||||||| |||||||||||   |  ||||| | |||||  |||||||||||||||| ||||||    
T  23601253 atagcgcacaagcacttagagaatttcttacaaactttcatgtcttagaaattaatacgtctcagagtccatctaaactttattgtattacacctct 23601349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 16265582 - 16265617
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  16265582 agaatttcttatcaactttcatatcttagaaattct 16265617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 20731136 - 20731171
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  20731136 agaatttcttatcaactttcatatcttagaaattct 20731171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 22801857 - 22801822
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  22801857 agaatttcttatcaactttcatatcttagaaattct 22801822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 25595894 - 25595859
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||||||||||||| |||||||||||||    
T  25595894 agaatttcttataaactttcatttcttagaaattct 25595859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 31127740 - 31127775
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||||||||||||||||||||| |||||    
T  31127740 agaatttcttataaactttcatatcttagatattct 31127775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 31720053 - 31720088
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    ||||||||||||||| ||||||||||||||||||||    
T  31720053 agaatttcttataaattttcatatcttagaaattct 31720088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 21946554 - 21946588
Alignment:
Q  187 tcaaacaatcttttgtttgattaagttagattgta 221  Q
    |||||||||||||| ||||||||||||||||||||    
T  21946554 tcaaacaatcttttatttgattaagttagattgta 21946588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 124
Target Start/End: Complemental strand, 21624805 - 21624772
Alignment:
Q  91 aatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||| |||||||||||||||||||||||    
T  21624805 aatttcttatcaactttcatatcttagaaattct 21624772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 16915144 - 16915108
Alignment:
Q  89 agaatttcttat-aaactttcatatcttagaaattct 124  Q
    |||||||||||| ||||||||||||||||||||||||    
T  16915144 agaatttcttatcaaactttcatatcttagaaattct 16915108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0859 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 2700 - 2665
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  2700 agaatttcttatcaactttcatatcttagaaattct 2665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 9687 - 9652
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  9687 agaatttcttatcaactttcatatcttagaaattct 9652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 9421 - 9456
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||||||||||||||||||| |||||||    
T  9421 agaatttcttataaactttcatatcttacaaattct 9456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 27823 - 27858
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  27823 agaatttcttatcaactttcatatcttagaaattct 27858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 103290 - 103255
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  103290 agaatttcttatcaactttcatatcttagaaattct 103255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 90449 - 90484
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  90449 agaatttcttatcaactttcatatcttagaaattct 90484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 19792 - 19758
Alignment:
Q  89 agaatttcttataaactttcatatcttagaaattc 123  Q
    |||||||||||| ||||||||||||||||||||||    
T  19792 agaatttcttatcaactttcatatcttagaaattc 19758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 10502 - 10535
Alignment:
Q  91 aatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||| |||||||||||||||||||||||    
T  10502 aatttcttatcaactttcatatcttagaaattct 10535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 15166 - 15199
Alignment:
Q  91 aatttcttataaactttcatatcttagaaattct 124  Q
    |||||||||| |||||||||||||||||||||||    
T  15166 aatttcttatcaactttcatatcttagaaattct 15199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University