View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0879_low_9 (Length: 299)

Name: NF0879_low_9
Description: NF0879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0879_low_9
NF0879_low_9
[»] scaffold0601 (2 HSPs)
scaffold0601 (31-293)||(4309-4571)
scaffold0601 (80-125)||(4554-4599)
[»] scaffold0059 (1 HSPs)
scaffold0059 (20-293)||(49345-49618)
[»] chr3 (22 HSPs)
chr3 (20-293)||(14479644-14479917)
chr3 (81-229)||(13520063-13520211)
chr3 (53-229)||(14085285-14085460)
chr3 (53-229)||(14090686-14090861)
chr3 (79-293)||(50755462-50755676)
chr3 (53-293)||(31224013-31224253)
chr3 (53-292)||(11913474-11913713)
chr3 (81-292)||(51602659-51602871)
chr3 (81-292)||(14647164-14647374)
chr3 (50-118)||(37916959-37917028)
chr3 (53-229)||(8582542-8582717)
chr3 (81-229)||(19450933-19451081)
chr3 (53-229)||(24122451-24122626)
chr3 (81-229)||(30123573-30123720)
chr3 (102-229)||(10989006-10989132)
chr3 (81-229)||(19444367-19444515)
chr3 (53-133)||(49400227-49400307)
chr3 (48-129)||(14479885-14479967)
chr3 (79-229)||(49400311-49400460)
chr3 (173-229)||(12270676-12270732)
chr3 (50-107)||(3991853-3991909)
chr3 (50-107)||(18910454-18910510)
[»] chr2 (16 HSPs)
chr2 (79-293)||(13361710-13361925)
chr2 (60-251)||(26861413-26861604)
chr2 (53-229)||(201375-201550)
chr2 (53-229)||(6743494-6743669)
chr2 (53-292)||(10039195-10039434)
chr2 (81-229)||(21132777-21132925)
chr2 (53-229)||(43694155-43694330)
chr2 (53-133)||(6743667-6743747)
chr2 (48-128)||(26861612-26861692)
chr2 (196-262)||(20916110-20916176)
chr2 (50-107)||(8943306-8943362)
chr2 (50-107)||(12636608-12636664)
chr2 (50-118)||(42178688-42178756)
chr2 (53-100)||(8943386-8943433)
chr2 (50-107)||(3799342-3799398)
chr2 (80-133)||(6743745-6743798)
[»] chr5 (10 HSPs)
chr5 (80-229)||(24830122-24830271)
chr5 (53-229)||(21557168-21557344)
chr5 (79-229)||(21554523-21554673)
chr5 (81-228)||(36460751-36460898)
chr5 (81-229)||(43242705-43242852)
chr5 (53-133)||(1856848-1856928)
chr5 (81-229)||(22758013-22758161)
chr5 (53-229)||(1856675-1856850)
chr5 (50-107)||(9731124-9731180)
chr5 (53-129)||(18318695-18318771)
[»] chr8 (9 HSPs)
chr8 (81-229)||(44432642-44432790)
chr8 (127-293)||(26859363-26859529)
chr8 (80-229)||(23825921-23826069)
chr8 (53-229)||(3698356-3698531)
chr8 (81-228)||(42559653-42559799)
chr8 (81-292)||(364570-364781)
chr8 (50-107)||(3432022-3432078)
chr8 (50-107)||(16873790-16873846)
chr8 (50-94)||(13721679-13721723)
[»] scaffold0577 (1 HSPs)
scaffold0577 (79-228)||(8734-8883)
[»] scaffold0104 (6 HSPs)
scaffold0104 (81-293)||(16650-16863)
scaffold0104 (85-229)||(8003-8148)
scaffold0104 (85-293)||(14634-14843)
scaffold0104 (81-229)||(18670-18819)
scaffold0104 (53-292)||(26679-26918)
scaffold0104 (53-292)||(28061-28300)
[»] scaffold0106 (1 HSPs)
scaffold0106 (53-229)||(39155-39330)
[»] scaffold0076 (2 HSPs)
scaffold0076 (53-229)||(29393-29568)
scaffold0076 (53-229)||(34794-34969)
[»] scaffold0011 (1 HSPs)
scaffold0011 (53-229)||(173809-173984)
[»] chr7 (16 HSPs)
chr7 (53-229)||(19617049-19617224)
chr7 (53-293)||(13744836-13745076)
chr7 (81-229)||(30820380-30820528)
chr7 (80-218)||(36685384-36685522)
chr7 (79-228)||(15214257-15214406)
chr7 (53-129)||(27565592-27565668)
chr7 (53-292)||(32772081-32772321)
chr7 (81-292)||(38828842-38829052)
chr7 (53-129)||(48273966-48274042)
chr7 (50-107)||(14251637-14251693)
chr7 (50-107)||(18980759-18980815)
chr7 (50-94)||(370548-370592)
chr7 (53-129)||(10063436-10063512)
chr7 (50-94)||(13757831-13757875)
chr7 (50-94)||(15927028-15927072)
chr7 (173-229)||(27565701-27565757)
[»] chr1 (8 HSPs)
chr1 (53-229)||(21542810-21542985)
chr1 (80-229)||(42095138-42095286)
chr1 (115-218)||(45496750-45496853)
chr1 (81-229)||(2332256-2332403)
chr1 (53-133)||(42095311-42095391)
chr1 (165-251)||(31343985-31344071)
chr1 (50-107)||(17148029-17148085)
chr1 (196-256)||(21995854-21995914)
[»] scaffold0379 (1 HSPs)
scaffold0379 (80-293)||(10479-10693)
[»] chr4 (9 HSPs)
chr4 (79-292)||(24046614-24046827)
chr4 (53-229)||(11201601-11201776)
chr4 (53-229)||(11208332-11208507)
chr4 (81-229)||(56114959-56115107)
chr4 (53-111)||(11201795-11201853)
chr4 (53-111)||(11208526-11208584)
chr4 (53-111)||(11201872-11201930)
chr4 (50-107)||(20000184-20000240)
chr4 (53-129)||(8574492-8574568)
[»] chr6 (11 HSPs)
chr6 (81-229)||(8759641-8759789)
chr6 (81-292)||(1254538-1254749)
chr6 (81-229)||(7430304-7430451)
chr6 (83-229)||(8767388-8767533)
chr6 (92-293)||(34140686-34140888)
chr6 (92-293)||(34153302-34153504)
chr6 (81-228)||(34296391-34296539)
chr6 (127-229)||(14593826-14593928)
chr6 (50-107)||(23977230-23977286)
chr6 (48-129)||(7680865-7680947)
chr6 (50-107)||(16231353-16231409)
[»] scaffold0599 (1 HSPs)
scaffold0599 (53-292)||(750-989)
[»] scaffold0026 (1 HSPs)
scaffold0026 (81-229)||(123685-123832)
[»] scaffold0077 (2 HSPs)
scaffold0077 (79-292)||(17338-17551)
scaffold0077 (81-229)||(22302-22450)
[»] scaffold0546 (1 HSPs)
scaffold0546 (81-229)||(10040-10188)
[»] scaffold0109 (1 HSPs)
scaffold0109 (81-229)||(3119-3267)
[»] scaffold0635 (1 HSPs)
scaffold0635 (53-292)||(7636-7875)
[»] scaffold0028 (2 HSPs)
scaffold0028 (53-229)||(46227-46402)
scaffold0028 (53-229)||(51631-51806)
[»] scaffold0112 (1 HSPs)
scaffold0112 (52-121)||(12732-12802)
[»] scaffold0436 (1 HSPs)
scaffold0436 (48-100)||(15-67)
[»] scaffold0074 (1 HSPs)
scaffold0074 (196-262)||(1740-1806)
[»] scaffold0032 (1 HSPs)
scaffold0032 (50-94)||(54882-54926)


Alignment Details
Target: scaffold0601 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 31 - 293
Target Start/End: Complemental strand, 4571 - 4309
Alignment:
Q  31 acatgcagaaatcgcagacttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagattttt 130  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4571 acatgtagaaatcacagacttgctgtcaaaatcacctcatgatttgtgaaatcgcctcatgattttgacagcatcagacatgcagaaatcacagattttt 4472  T
Q  131 ctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcattat 230  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  4471 ctgcgattttccactatgcgaggttccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccgtatgattaacctatcattat 4372  T
Q  231 aaccgtaattcttcattaaccaactggattattcacccctttcaccgtttaattctatggttc 293  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4371 aaccgtaattcttcattaaccaaccggattattcacccctttcaccgtttaattctatggttc 4309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0601; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 4599 - 4554
Alignment:
Q  80 aatcgcctcatgattttgacaacatcagacatgcagaaatcacaga 125  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||    
T  4599 aatcgcctcatgattttgacaacatcggacatgtagaaatcacaga 4554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 293
Target Start/End: Original strand, 49345 - 49618
Alignment:
Q  20 gacatcatcaaacatgcagaaatcgcagacttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaat 119  Q
    |||| ||||| |||| | |||||  |||| || ||||||||||| |||||||||  ||| |||||||||||||||| ||||  |||| || ||| |||||    
T  49345 gacagcatcagacatactgaaattacagattttctgtcaaaatcgcctcatgataattggaatcgcctcatgatttcgacagtatcatacttgctgaaat 49444  T
Q  120 cacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaa 219  Q
    |||| |||||||||| |||||| || ||| ||| ||||||||||    || |||||||||||||| |||||||||||| ||||||||||| ||||||||     
T  49445 cacaaatttttctgcgattttctaccatgggagcctccttggcttcaattctcaaccctaaactctccaaaatcgtccataatcatcaccatatgattac 49544  T
Q  220 actatcattataaccgtaattcttcattaaccaactggattattcacccctttcaccgtttaattctatggttc 293  Q
     ||||||||| |||  |||| | ||| ||||| ||  |||||  ||| | |||||||||| |||||||||||||    
T  49545 cctatcattagaacgttaatccctcactaacctacctgattaaccactcttttcaccgttcaattctatggttc 49618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 293
Target Start/End: Complemental strand, 14479917 - 14479644
Alignment:
Q  20 gacatcatcaaacatgcagaaatcgcagacttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaat 119  Q
    |||| ||||| |||| | |||||  |||| || ||||||||||| |||||||||   || ||| |||||||||||| |||| |||||||||| | ||| |    
T  14479917 gacagcatcagacatactgaaattacagattttctgtcaaaatcgcctcatgatcactggaattgcctcatgatttcgacagcatcagacattctgaagt 14479818  T
Q  120 cacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaa 219  Q
    ||||||||||||||| |||||| || ||| ||| ||||||||||  |||| | |||||||||||| |||||||||||| ||||||||||| ||||||||     
T  14479817 cacagatttttctgcgattttctaccatgggagcctccttggctccgtttcttaaccctaaactctccaaaatcgtccataatcatcaccatatgattac 14479718  T
Q  220 actatcattataaccgtaattcttcattaaccaactggattattcacccctttcaccgtttaattctatggttc 293  Q
     ||||||||| |||  |||| | ||| ||||| ||  |||||   || | |||||||||| |||||||||||||    
T  14479717 cctatcattaaaacattaatccctcactaacctacctgattaacgacacttttcaccgttcaattctatggttc 14479644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 81 - 229
Target Start/End: Original strand, 13520063 - 13520211
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaa 180  Q
    ||||||||||||||| |||| ||||| |||||| |||||||||||||||||||| |||||| || ||| ||| |||||||||| ||||| |  |||||||    
T  13520063 atcgcctcatgatttcgacatcatcatacatgctgaaatcacagatttttctgcgattttctaccatgggagcctccttggctctgtttcttgaccctaa 13520162  T
Q  181 actcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    |||| |||||||||||| ||||||||||| ||||||||  |||||||||    
T  13520163 actctccaaaatcgtccataatcatcaccatatgattaccctatcatta 13520211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 14085285 - 14085460
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| ||||||||||| |  |||||||||||||||| ||||  ||||||||||| ||||||||||| |||||||| |||||| || ||| |||    
T  14085285 ctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacaga-ttttctgcgattttctaccatgggag 14085383  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
     ||||||||||    || |||||||||||||| |||||||| ||| ||| ||||||| ||||||||  |||||||||    
T  14085384 cctccttggcttcaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatcatta 14085460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 14090686 - 14090861
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| ||||||||||| |  |||||||||||||||| ||||  ||||||||||| ||||||||||| |||||||| |||||| || ||| |||    
T  14090686 ctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacaga-ttttctgcgattttctaccatgggag 14090784  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
     ||||||||||    || |||||||||||||| |||||||| ||| ||| ||||||| ||||||||  |||||||||    
T  14090785 cctccttggcttcaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatcatta 14090861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 79 - 293
Target Start/End: Complemental strand, 50755676 - 50755462
Alignment:
Q  79 aaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccct 178  Q
    ||||||||||||||||| |||| ||||| ||||||  |||||| |||||||||||| |||||| || ||| ||| ||||||||||   ||| |  |||||    
T  50755676 aaatcgcctcatgatttcgacagcatcatacatgctaaaatcatagatttttctgcgattttctaccatgggagcctccttggctccatttcttgaccct 50755577  T
Q  179 aaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaaccaactggattattcacccctttcaccgt 278  Q
    |||||| |||||||||||  ||||||||||| ||||||||  ||||||||| |||  |||| | ||| ||||| ||  |||||  ||| | |||||||||    
T  50755576 aaactctccaaaatcgtcaataatcatcaccatatgattaccctatcattagaacattaatccatcactaacctacctgattaaccactcttttcaccgt 50755477  T
Q  279 ttaattctatggttc 293  Q
    | |||||||||||||    
T  50755476 tcaattctatggttc 50755462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 293
Target Start/End: Complemental strand, 31224253 - 31224013
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| ||||| |||   || |||||||||| ||||| |||| ||||| ||||||  |||||||| |||||||||| |||||| || ||| |||    
T  31224253 ctgtcaaaatcgcctcacgatcactggaatcgcctcacgatttcgacagcatcatacatgctaaaatcacatatttttctgcgattttctaccatgggag 31224154  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaacca 252  Q
     ||| ||||||  |||| |  ||||||||||| |||||||||||| ||||||||||| ||||||||  ||||||||| |||  |||| | ||| || ||     
T  31224153 cctcattggctccgtttcttgaccctaaactctccaaaatcgtccataatcatcaccatatgattaccctatcattaaaacgttaatccatcactaccct 31224054  T
Q  253 actggattattcacccctttcaccgtttaattctatggttc 293  Q
    ||  |||||  ||| | |||||||||| |||||||||||||    
T  31224053 acctgattaaccactcttttcaccgttcaattctatggttc 31224013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 292
Target Start/End: Original strand, 11913474 - 11913713
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| |||||||||  |||  ||||||||| ||||| |||| ||||| | |||| || ||  ||||||||||||| |||||| || ||| |||    
T  11913474 ctgtcaaaatcgcctcatgatcattgggatcgcctcacgatttcgacagcatcatatatgctgatattgcagatttttctgcgattttctaccatgggag 11913573  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaacca 252  Q
     ||||||||||  ||||||  ||||||||||| | |||||| ||| ||||||||||| ||||||||  ||||||||  |||  |||| | ||| |||||     
T  11913574 cctccttggctccgttttttgaccctaaactctctaaaatcatccataatcatcaccatatgattaccctatcattgaaacgttaatccatcactaacct 11913673  T
Q  253 actggattattcacccctttcaccgtttaattctatggtt 292  Q
    ||  |||||  ||| | |||||||||| ||||||||||||    
T  11913674 acccgattaaccactcttttcaccgttcaattctatggtt 11913713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 81 - 292
Target Start/End: Complemental strand, 51602871 - 51602659
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccct-a 179  Q
    ||||||||||||||| |||| ||||| |||||| || || |||||||||||| | |||||| || ||| ||| ||||||||||  ||||||  ||||| |    
T  51602871 atcgcctcatgatttcgacagcatcatacatgctgatattacagatttttctacgattttctaccatgggagcctccttggctccgttttttgaccctaa 51602772  T
Q  180 aactcaccaaaatcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaaccaactggattattcacccctttcaccgtt 279  Q
    ||||| |||||||| ||| ||||| || || ||||||||  ||||||||  |||  |||| | ||| ||||| ||  |||||  ||| | ||||||||||    
T  51602771 aactctccaaaatcatccataatcctcgccatatgattaccctatcattgaaacgttaatccctcactaacctacccgattaaccactcttttcaccgtt 51602672  T
Q  280 taattctatggtt 292  Q
     ||||||||||||    
T  51602671 caattctatggtt 51602659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 292
Target Start/End: Complemental strand, 14647374 - 14647164
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaa 180  Q
    ||||||||| ||||| |||| ||||||||||   ||||| ||||||||| |||| |||||| || ||| ||| ||||||||||   | | | ||||||||    
T  14647374 atcgcctcacgatttcgacagcatcagacatattgaaattacagatttt-ctgcgattttctaccatgggagcctccttggctccatctcttaaccctaa 14647276  T
Q  181 actcaccaaaatcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaaccaactggattattcacccctttcaccgttt 280  Q
    |||| |||||||| ||| ||||||||||| ||||||||  ||||||||| |||  |||| | ||| ||||| ||  |||||  ||| | ||||||| ||     
T  14647275 actctccaaaatcatccataatcatcaccatatgattaccctatcattaaaacgttaatccatcactaacctacctgattaaccactcttttcaccattc 14647176  T
Q  281 aattctatggtt 292  Q
    ||||||||||||    
T  14647175 aattctatggtt 14647164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 37917028 - 37916959
Alignment:
Q  50 ttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcaga-catgcagaaa 118  Q
    |||||||||||||| ||||||||||  ||||||||| ||||||||| |||||||||||| ||||||||||    
T  37917028 ttgctgtcaaaatcgcctcatgattcgtgaaatcgcttcatgatttcgacaacatcagaccatgcagaaa 37916959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 8582717 - 8582542
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| |||||||||   |  |||||||||||||||| ||||| ||||||||| |  |||| ||| ||||| |||| |||||| || ||| ||     
T  8582717 ctgtcaaaatcgcctcatgatccctagaatcgcctcatgatttcgacaatatcagacatcctaaaattacacatttt-ctgcgattttctaccatgggaa 8582619  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
     ||||||||||   | | | |||||||||||| |||||||| ||| ||| ||||||| ||||||||  |||||||||    
T  8582618 cctccttggctccatctcttaaccctaaactctccaaaatcatccataaacatcaccatatgattaccctatcatta 8582542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 229
Target Start/End: Original strand, 19450933 - 19451081
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaa 180  Q
    ||||||||||||||| |||| | ||  ||||   ||||| |||||||||||| | |||||| || ||| ||| ||||||||||   ||| |  |||||||    
T  19450933 atcgcctcatgatttcgacagcttcctacatattgaaattacagatttttctacgattttctaccatgggagcctccttggctccatttcttgaccctaa 19451032  T
Q  181 actcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    |||| |||||||| ||| ||||||||||| ||||||||  |||||||||    
T  19451033 actctccaaaatcatccataatcatcaccatatgattaccctatcatta 19451081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 24122626 - 24122451
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| ||||||||||| |  ||||| |||||||||| ||||  ||||||||| |  |||| ||| ||||| |||| |||||| || ||| ||     
T  24122626 ctgtcaaaatcgcctcatgatttctagaatcgactcatgatttcgacagtatcagacatcctaaaattacacatttt-ctgcgattttctaccatgggaa 24122528  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
     ||||||||||   | | | |||||||||||| |||||||| ||| ||| ||||||| ||||||||  |||||||||    
T  24122527 cctccttggctccatctcttaaccctaaactctccaaaatcatccataaacatcaccatatgattaccctatcatta 24122451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 229
Target Start/End: Complemental strand, 30123720 - 30123573
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaa 180  Q
    ||||||||| ||||| |||| ||||||||||   ||||  ||||||||| |||| |||||| || ||| ||| ||| ||||||   ||| | ||||||||    
T  30123720 atcgcctcacgatttcgacagcatcagacatattgaaaatacagatttt-ctgcgattttctaccatgggagcctcattggctccatttcttaaccctaa 30123622  T
Q  181 actcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    |||| |||||||| ||| ||||||||||| |||||| | ||||||||||    
T  30123621 actctccaaaatcatccataatcatcaccatatgataacactatcatta 30123573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 229
Target Start/End: Complemental strand, 10989132 - 10989006
Alignment:
Q  102 catcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaa 201  Q
    ||||||||||   ||||| |||||||||| ||| |||||| || ||| ||| ||||||||||  |||  | |||||||||||| |||||||| ||| |||    
T  10989132 catcagacatattgaaattacagattttt-tgcgattttctaccatgggagcctccttggctccgttacttaaccctaaactctccaaaatcatccataa 10989034  T
Q  202 tcatcaccctatgattaaactatcatta 229  Q
    |||||||| ||||||||  |||||||||    
T  10989033 tcatcaccatatgattaccctatcatta 10989006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 229
Target Start/End: Original strand, 19444367 - 19444515
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaa 180  Q
    ||||||||||||||| |||| | ||  ||||   ||||| |||||||||||| | |||||| || ||| ||| ||||||||||   ||| |  |||||||    
T  19444367 atcgcctcatgatttcgacagcttcctacatattgaaattacagatttttctacgattttctaccatgggagcctccttggctccatttcttgaccctaa 19444466  T
Q  181 actcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    |||| |||||||| ||| ||||||||||| || |||||  |||||||||    
T  19444467 actctccaaaatcatccataatcatcaccataggattaccctatcatta 19444515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 49400227 - 49400307
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctg 133  Q
    ||||||||||| ||||||||||| |  |||||||||||||||| ||||  ||||||||| |  |||| |||||||||||||    
T  49400227 ctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatactaaaattacagatttttctg 49400307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 14479967 - 14479885
Alignment:
Q  48 acttgctgtcaaaatcacctcatgatttttgaaa-tcgcctcatgattttgacaacatcagacatgcagaaatcacagatttt 129  Q
    |||||||||||||||| | |||||||||   ||| |||| |||||||||||||| |||||||||| | ||||| |||||||||    
T  14479967 acttgctgtcaaaatcgcttcatgatttggaaaaatcgcttcatgattttgacagcatcagacatactgaaattacagatttt 14479885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 229
Target Start/End: Original strand, 49400311 - 49400460
Alignment:
Q  79 aaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccct 178  Q
    ||||||||||||||||| ||||  ||||||||| |  |||| ||| ||||| |||| |||||| || ||| ||  ||||||||||   | | | ||||||    
T  49400311 aaatcgcctcatgatttcgacagtatcagacatcctaaaattacacatttt-ctgcgattttctaccatgggaacctccttggctccatctcttaaccct 49400409  T
Q  179 aaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    |||||| |||||||| ||| ||| ||||||| ||||||||  |||||||||    
T  49400410 aaactctccaaaatcatccataaacatcaccatatgattaccctatcatta 49400460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 12270732 - 12270676
Alignment:
Q  173 aaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    |||||||||||| |||||||| ||| ||||||||||| ||||||||  |||||||||    
T  12270732 aaccctaaactctccaaaatcatccataatcatcaccatatgattaccctatcatta 12270676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 3991853 - 3991909
Alignment:
Q  50 ttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcag 107  Q
    |||||||||||||| |||||||||||  |||||||| |||||| || |||||||||||    
T  3991853 ttgctgtcaaaatcgcctcatgatttgcgaaatcgcttcatga-ttcgacaacatcag 3991909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 18910454 - 18910510
Alignment:
Q  50 ttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcag 107  Q
    |||||||||||||| |||||||||||  |||||||| |||||| || |||||||||||    
T  18910454 ttgctgtcaaaatcgcctcatgatttgcgaaatcgcttcatga-ttcgacaacatcag 18910510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 79 - 293
Target Start/End: Original strand, 13361710 - 13361925
Alignment:
Q  79 aaatcgcctcatgattttgacaacatcagac-atgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccc 177  Q
    |||||||||||||||||||||| ||| |||| ||||||||| || |||||||||||  ||||| ||| ||| |||  || ||| ||  ||||||| ||||    
T  13361710 aaatcgcctcatgattttgacagcattagaccatgcagaaaccatagatttttctgtgatttttcaccatgagagcgtcgttgactccgtttttcgaccc 13361809  T
Q  178 taaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaaccaactggattattcacccctttcaccg 277  Q
    ||||||| ||||||| |||||||||||||||| ||||||||  |||||||  ||||  ||||||| |||||||| ||  |||||| ||| | ||||||||    
T  13361810 taaactcgccaaaattgtccctaatcatcaccatatgattaccctatcatcgtaacactaattctccattaacctaccagattatccactcttttcaccg 13361909  T
Q  278 tttaattctatggttc 293  Q
    ||||||| ||||||||    
T  13361910 tttaattttatggttc 13361925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 60 - 251
Target Start/End: Complemental strand, 26861604 - 26861413
Alignment:
Q  60 aatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctcctt 159  Q
    |||| ||||||||| | |||||||||||||||||||  ||| |||||||||||| ||||||||| |||||||||| |||||| || ||| ||| ||||||    
T  26861604 aatcgcctcatgatctgtgaaatcgcctcatgatttctacagcatcagacatgctgaaatcacaaatttttctgcgattttctaccatgggagcctcctt 26861505  T
Q  160 ggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaacc 251  Q
    ||||  ||||||| || ||||| ||||||||||| | ||||||| ||||| ||| ||||  ||||| ||| |||  ||||||||||||||||    
T  26861504 ggctccgtttttctactctaaattcaccaaaatcatacctaatcttcaccatattattaccctatcgttagaacattaattcttcattaacc 26861413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 201375 - 201550
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| ||||||||||| |  |||||||||||||||| ||||  ||||||||||| ||||||||||| |||||||| |||||| || ||| |||    
T  201375 ctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacaga-ttttctgcgattttctaccatgggag 201473  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
     ||||||||||    || |||||||||||||| |||||||| ||| ||| ||||||| ||||||||  |||||||||    
T  201474 cctccttggcttcaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatcatta 201550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 6743669 - 6743494
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| ||||||||||| |  |||||||||||||||| ||||  ||||||||||| ||||||||||| |||||||| |||||| || ||| |||    
T  6743669 ctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacaga-ttttctgcgattttctaccatgggag 6743571  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
     ||||||||||    || |||||||||||||| |||||||| ||| ||| ||||||| ||||||||  |||||||||    
T  6743570 cctccttggcttcaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatcatta 6743494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 53 - 292
Target Start/End: Complemental strand, 10039434 - 10039195
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| ||||| |||   || |||||||||| ||||| |||| ||||| || ||  || || |||||||||||||| |||||| || ||| |||    
T  10039434 ctgtcaaaatcgcctcacgatcactggaatcgcctcacgatttcgacagcatcatacgtgttgatattacagatttttctgcgattttctaccatgggag 10039335  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaacca 252  Q
     ||||||||||  |||| |  ||||||||||| |||||||  ||| ||||||||||| ||||||||  ||||||||| |||  |||| | ||| |||||     
T  10039334 cctccttggctccgtttcttgaccctaaactctccaaaataatccataatcatcaccatatgattaccctatcattaaaacgttaatccatcactaacct 10039235  T
Q  253 actggattattcacccctttcaccgtttaattctatggtt 292  Q
    ||  |||||  ||| | |||| ||||| ||||||||||||    
T  10039234 acctgattaaccactcttttccccgttcaattctatggtt 10039195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 229
Target Start/End: Complemental strand, 21132925 - 21132777
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaa 180  Q
    ||||||||||||||| |||| ||||||||||   |||||  ||||||||||||| |||| | || ||| ||| ||||||||||    || | ||||||||    
T  21132925 atcgcctcatgatttcgacagcatcagacatattgaaattgcagatttttctgcgatttcctaccatgggagcctccttggctccaattcttaaccctaa 21132826  T
Q  181 actcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    |||| |||||||| ||| ||||||||||| |||||| |  |||||||||    
T  21132825 actctccaaaatcatccataatcatcaccatatgatcaccctatcatta 21132777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 43694155 - 43694330
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| ||||||||||| |  |||||||||||||||| ||||  ||||||||| |  |||| ||| | |||||| | |||||| || ||| ||     
T  43694155 ctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatcctaaaattacaca-ttttctacgattttctaccatgggaa 43694253  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
     ||||||||||   | | | |||||||||||| |||||||| ||| ||| ||||||| ||||||||  |||||||||    
T  43694254 cctccttggctccatctcttaaccctaaactctccaaaatcatccataaacatcaccatatgattaccctatcatta 43694330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 6743747 - 6743667
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctg 133  Q
    ||||||||||| ||||||||||| |  |||||||||||||||| ||||  ||||||||| |  |||| |||||||||||||    
T  6743747 ctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatactaaaattacagatttttctg 6743667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 26861692 - 26861612
Alignment:
Q  48 acttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagattt 128  Q
    |||||||||||||||| ||| |||||   || |||||||||||||||||||||  ||||||||| | ||||| ||||||||    
T  26861692 acttgctgtcaaaatcgcctaatgatcagtggaatcgcctcatgattttgacagaatcagacatactgaaattacagattt 26861612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 20916110 - 20916176
Alignment:
Q  196 ccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaaccaactggattat 262  Q
    |||||||||| ||||||||||||| |||||||||||||  ||||| ||||| |||| |||| |||||    
T  20916110 ccctaatcattaccctatgattaatctatcattataacactaattattcatcaacctactgtattat 20916176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 8943306 - 8943362
Alignment:
Q  50 ttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcag 107  Q
    ||||||||||||||||||||||||||  |||||||| |||||| || |||||||||||    
T  8943306 ttgctgtcaaaatcacctcatgatttgcgaaatcgcttcatga-ttcgacaacatcag 8943362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 12636664 - 12636608
Alignment:
Q  50 ttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcag 107  Q
    ||||||||||||||||||||||||||  |||||||| |||||| || |||||||||||    
T  12636664 ttgctgtcaaaatcacctcatgatttgcgaaatcgcttcatga-ttcgacaacatcag 12636608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 42178756 - 42178688
Alignment:
Q  50 ttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagac-atgcagaaa 118  Q
    |||||||||||||| |||||||||||  |||||||| |||||| || ||||||||||||| |||||||||    
T  42178756 ttgctgtcaaaatcgcctcatgatttgcgaaatcgcttcatga-ttcgacaacatcagactatgcagaaa 42178688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 8943386 - 8943433
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgaca 100  Q
    ||||||||||||||||||||||| | | ||||| ||||||||||||||    
T  8943386 ctgtcaaaatcacctcatgatttgtaagatcgcttcatgattttgaca 8943433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 3799398 - 3799342
Alignment:
Q  50 ttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcag 107  Q
    |||||||||||||| |||||||||||  |||||||| |||||| || |||||||||||    
T  3799398 ttgctgtcaaaatcgcctcatgatttgcgaaatcgcttcatga-ttcgacaacatcag 3799342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 6743798 - 6743745
Alignment:
Q  80 aatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctg 133  Q
    |||||||||||||||| |||| |||||||||| |  |||| |||||||||||||    
T  6743798 aatcgcctcatgatttcgacagcatcagacatactaaaattacagatttttctg 6743745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 80 - 229
Target Start/End: Complemental strand, 24830271 - 24830122
Alignment:
Q  80 aatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaacccta 179  Q
    |||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||||||| || ||| ||| ||||||||||  |||| |  ||||||    
T  24830271 aatcgcctcatgatttcgacagcatcagacatgctgaaatcatagatttttctgcaattttctaccatgggagcctccttggctccgtttcttgacccta 24830172  T
Q  180 aactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    || || |||||||||||| ||||||||||| ||||||||  |||||||||    
T  24830171 aaatctccaaaatcgtccataatcatcaccatatgattaccctatcatta 24830122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 21557344 - 21557168
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| ||||| |||   || |||||||||| ||||| |||| ||||| |||||| |||||||||||||||||||| |||||| || ||| |||    
T  21557344 ctgtcaaaatcgcctcacgatcactggaatcgcctcacgatttcgacagcatcatacatgctgaaatcacagatttttctgcgattttctaccatgggag 21557245  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
     ||||||||||  |||| |  ||||||||||| |||||||||||| ||||||||||| ||||||||  |||||||||    
T  21557244 cctccttggctccgtttcttgaccctaaactctccaaaatcgtccataatcatcaccatatgattaccctatcatta 21557168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 79 - 229
Target Start/End: Complemental strand, 21554673 - 21554523
Alignment:
Q  79 aaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccct 178  Q
    ||||||||||| ||||| |||| ||||| |||||| |||||||||||||||||||| |||||| || ||| ||| |||||||||| ||||| |  || ||    
T  21554673 aaatcgcctcacgatttcgacagcatcatacatgctgaaatcacagatttttctgcgattttctaccatgggagcctccttggctctgtttcttgactct 21554574  T
Q  179 aaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    |||||| |||||||||||| ||||||||||| ||||||||  |||||||||    
T  21554573 aaactctccaaaatcgtccataatcatcaccatatgattaccctatcatta 21554523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 81 - 228
Target Start/End: Original strand, 36460751 - 36460898
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaa 180  Q
    ||||||||| |||||||||| ||||| |||||| || || |||||||||||||| |||||| || ||| ||| ||||||| ||  |||||| ||||||||    
T  36460751 atcgcctcacgattttgacagcatcatacatgctgatattacagatttttctgcgattttctaccatgggagcctccttgactccgttttttaaccctaa 36460850  T
Q  181 actcaccaaaatcgtccctaatcatcaccctatgattaaactatcatt 228  Q
    |||| |||||||| ||| ||||||||||| ||||||||  ||||||||    
T  36460851 actctccaaaatcatccataatcatcaccatatgattaccctatcatt 36460898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 81 - 229
Target Start/End: Complemental strand, 43242852 - 43242705
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaa 180  Q
    ||||||||||||||| |||| ||||||||||   ||||| ||||||||| |||| |||||| || ||| ||| ||||||||||  |||| | ||||||||    
T  43242852 atcgcctcatgatttcgacagcatcagacatattgaaattacagatttt-ctgcgattttctaccatgggagcctccttggctccgtttcttaaccctaa 43242754  T
Q  181 actcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    |||| |||||||| ||| ||||||||||| ||||||||  |||||||||    
T  43242753 actctccaaaatcatccataatcatcaccatatgattactctatcatta 43242705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 1856928 - 1856848
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctg 133  Q
    ||||||||||| ||||||||||| |  |||||||||||||||| ||||  ||||||||||| ||||| |||||||||||||    
T  1856928 ctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaattacagatttttctg 1856848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 229
Target Start/End: Complemental strand, 22758161 - 22758013
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaa 180  Q
    ||||||||| ||||| |||  ||||| |||||| || || |||||||||||||| |||||| || ||| ||  ||||||||||   | | | |||||| |    
T  22758161 atcgcctcacgatttcgactgcatcatacatgctgatattacagatttttctgcgattttctaccatgggaacctccttggctccatctcttaaccctca 22758062  T
Q  181 actcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    |||| |||||||| ||| ||||||||||||||||||||  |||||||||    
T  22758061 actctccaaaatcatccataatcatcaccctatgattaccctatcatta 22758013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 1856850 - 1856675
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| |||||||||   |  |||||||||||||||| ||||  |||| |||| |  |||| ||| ||||| |||| |||||| || ||| ||     
T  1856850 ctgtcaaaatcgcctcatgatcactagaatcgcctcatgatttcgacagtatcatacatcctaaaattacacatttt-ctgcgattttctaccatgggaa 1856752  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
     ||||||||||   | | |||||||||||||| |||||||| ||| ||| ||||||| ||||||||  |||||||||    
T  1856751 cctccttggctccatctctcaaccctaaactctccaaaatcatccataaacatcaccatatgattaccctatcatta 1856675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 9731180 - 9731124
Alignment:
Q  50 ttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcag 107  Q
    ||||||||||||||||||||||||||  |||||||| |||||| || |||||||||||    
T  9731180 ttgctgtcaaaatcacctcatgatttgcgaaatcgcttcatga-ttcgacaacatcag 9731124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 18318771 - 18318695
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttt 129  Q
    ||||||||||| |||||||||   |  |||||||||||||||| |||| |||||||||| |  |||| |||||||||    
T  18318771 ctgtcaaaatcgcctcatgatcactagaatcgcctcatgatttcgacagcatcagacatactaaaattacagatttt 18318695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 81 - 229
Target Start/End: Original strand, 44432642 - 44432790
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaa 180  Q
    ||||||||||||||| |||| |||||||||||| ||||||||| |||||||||| |||||| || ||| ||| ||||||||||   ||| | ||||||||    
T  44432642 atcgcctcatgatttcgacagcatcagacatgctgaaatcacatatttttctgcgattttctaccatgggagcctccttggctccatttcttaaccctaa 44432741  T
Q  181 actcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    |||| |||||||| ||| ||||||||||| |||||||| ||||||||||    
T  44432742 actctccaaaatcatccataatcatcaccatatgattacactatcatta 44432790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 127 - 293
Target Start/End: Complemental strand, 26859529 - 26859363
Alignment:
Q  127 ttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatca 226  Q
    |||||||||||||||||| ||| ||| |||||| |||  |||| |  |||||||||||||||||||||||||||||||||||| |||||||   ||||||    
T  26859529 ttttctgcaattttccaccatgggagcctcctttgctccgtttctggaccctaaactcaccaaaatcgtccctaatcatcaccatatgatttccctatca 26859430  T
Q  227 ttataaccgtaattcttcattaaccaactggattattcacccctttcaccgtttaattctatggttc 293  Q
    ||| |||   ||||||||||||||| ||  |||||| ||| | |||||||||| | |||||||||||    
T  26859429 ttagaacaccaattcttcattaacctacccgattatccactcttttcaccgttcagttctatggttc 26859363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 80 - 229
Target Start/End: Original strand, 23825921 - 23826069
Alignment:
Q  80 aatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaacccta 179  Q
    |||||||||||||||| ||||  ||||||||||| ||||||||||| |||||||| |||||| || ||| ||| ||||||||||    || |||||||||    
T  23825921 aatcgcctcatgatttcgacagtatcagacatgctgaaatcacaga-ttttctgcgattttctaccatgggagcctccttggcttcaattctcaacccta 23826019  T
Q  180 aactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    ||||| |||||||| ||| ||| ||||||| ||||||||  |||||||||    
T  23826020 aactctccaaaatcatccataaacatcaccgtatgattaccctatcatta 23826069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 3698356 - 3698531
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| ||||||||||| |  |||||||||||||||||||||  ||||||||||| ||||| ||| | |||||||| |||||| || ||  ||     
T  3698356 ctgtcaaaatcgcctcatgatttctagaatcgcctcatgattttgacagtatcagacatgctgaaattacaca-ttttctgcgattttctaccattggaa 3698454  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
     ||||||||||   | | | |||||||||||| |||||||| ||| ||||||| ||| ||||||||  |||||||||    
T  3698455 cctccttggctccatctcttaaccctaaactctccaaaatcatccataatcattaccatatgattaccctatcatta 3698531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 228
Target Start/End: Complemental strand, 42559799 - 42559653
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaa 180  Q
    ||||||||| ||||| |||| ||||| |||||| || || |||||||||||||| |||| | || ||| ||| ||||||||||  ||||||  |||||||    
T  42559799 atcgcctcacgatttcgacagcatcatacatgctgatattacagatttttctgcgattt-ctaccatgggagcctccttggctccgttttttgaccctaa 42559701  T
Q  181 actcaccaaaatcgtccctaatcatcaccctatgattaaactatcatt 228  Q
    |||| |||||||| ||| ||||||||||| || |||||  ||||||||    
T  42559700 actctccaaaatcatccataatcatcaccatacgattaccctatcatt 42559653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 81 - 292
Target Start/End: Original strand, 364570 - 364781
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaa 180  Q
    |||||||||  |||| |||| ||||| |||| | || || |||||||||||||  |||||| || ||| ||| ||| ||||||   ||| | ||||||||    
T  364570 atcgcctcacaatttcgacagcatcatacatactgatattacagatttttctgtgattttctaccatgggagcctctttggctccatttcttaaccctaa 364669  T
Q  181 actcaccaaaatcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaaccaactggattattcacccctttcaccgttt 280  Q
    |||| |||||||| ||| ||||||||||  ||||||||  ||||||||| |||  |||| | ||| ||||| ||  |||||  ||| | ||||||||||     
T  364670 actctccaaaatcatccataatcatcacgatatgattaccctatcattaaaacgttaatccatcactaacctacctgattaaccactcttttcaccgttc 364769  T
Q  281 aattctatggtt 292  Q
    ||||||||||||    
T  364770 aattctatggtt 364781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 3432078 - 3432022
Alignment:
Q  50 ttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcag 107  Q
    |||||||||||||| |||||||||||  |||||||| |||||| || |||||||||||    
T  3432078 ttgctgtcaaaatcgcctcatgatttgcgaaatcgcttcatga-ttcgacaacatcag 3432022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 16873846 - 16873790
Alignment:
Q  50 ttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcag 107  Q
    |||||||||||||| |||||||||||  |||||||| |||||| || |||||||||||    
T  16873846 ttgctgtcaaaatcgcctcatgatttgcgaaatcgcttcatga-ttcgacaacatcag 16873790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 13721723 - 13721679
Alignment:
Q  50 ttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgatt 94  Q
    |||||||||||||| |||||||||||  |||||||| ||||||||    
T  13721723 ttgctgtcaaaatcgcctcatgatttgcgaaatcgcttcatgatt 13721679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 8734 - 8883
Alignment:
Q  79 aaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccct 178  Q
    ||||||||||| ||||| |||| ||||| |||||| |||||||||||||||||||| |||||| || ||| ||| ||||||||||  |||| |  |||||    
T  8734 aaatcgcctcacgatttcgacatcatcatacatgctgaaatcacagatttttctgcgattttctacgatgggagcctccttggctccgtttcttgaccct 8833  T
Q  179 aaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatt 228  Q
    |||||| |||||||||||| ||||||||||| ||||||||  ||||||||    
T  8834 aaactctccaaaatcgtccataatcatcaccatatgattaccctatcatt 8883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 81 - 293
Target Start/End: Original strand, 16650 - 16863
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagat-ttttctgcaattttccactatgcgaggctccttggctatgtttttcaacccta 179  Q
    ||||||||||||||| |||| ||||| |||||| |||||||||||| |||||||| | |||| || ||| ||| |||||||||| ||||| |  ||||||    
T  16650 atcgcctcatgatttcgacagcatcatacatgctgaaatcacagatattttctgcgaatttctaccatgggagcctccttggctctgtttcttgacccta 16749  T
Q  180 aactcaccaaaatcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaaccaactggattattcacccctttcaccgtt 279  Q
    ||||| |||||||||||| ||||||||||| ||||||||  ||||||||| |||  |||| | ||| ||||| ||  |||||  ||| | |||| |||||    
T  16750 aactctccaaaatcgtccataatcatcaccatatgattaccctatcattagaacgttaatccatcactaacctacctgattaaccactcttttccccgtt 16849  T
Q  280 taattctatggttc 293  Q
     |||||||||||||    
T  16850 caattctatggttc 16863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 85 - 229
Target Start/End: Original strand, 8003 - 8148
Alignment:
Q  85 cctcatgattttgacaacatcagacatgcagaaatcacagat-ttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaaact 183  Q
    ||||||||||| |||| ||||| |||||| |||||||||||| |||||||| |||||| || ||| ||| |||||||||| ||||| |  ||||||||||    
T  8003 cctcatgatttcgacagcatcatacatgctgaaatcacagatattttctgcgattttctaccatgggagcctccttggctctgtttcttgaccctaaact 8102  T
Q  184 caccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    | |||||||||||| ||||||||||| ||||||||  |||||||||    
T  8103 ctccaaaatcgtccataatcatcaccatatgattaccctatcatta 8148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 85 - 293
Target Start/End: Original strand, 14634 - 14843
Alignment:
Q  85 cctcatgattttgacaacatcagacatgcagaaatcacagat-ttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaaact 183  Q
    ||||||||||| |||| ||||| |||||| |||||||||||| |||||||| | |||| || ||| ||| |||||||||| ||||| |  ||||||||||    
T  14634 cctcatgatttcgacagcatcatacatgctgaaatcacagatattttctgcgaatttctaccatgggagcctccttggctctgtttcttgaccctaaact 14733  T
Q  184 caccaaaatcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaaccaactggattattcacccctttcaccgtttaat 283  Q
    | |||||||||||| ||||||||||| ||||||||  ||||||||| |||  |||| | ||| ||||| ||  |||||  ||| | |||| ||||| |||    
T  14734 ctccaaaatcgtccataatcatcaccatatgattaccctatcattagaacgttaatccatcactaacctacctgattaaccactcttttccccgttcaat 14833  T
Q  284 tctatggttc 293  Q
    ||||||||||    
T  14834 tctatggttc 14843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 81 - 229
Target Start/End: Original strand, 18670 - 18819
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagat-ttttctgcaattttccactatgcgaggctccttggctatgtttttcaacccta 179  Q
    ||||||||||||||| |||| ||||| |||||| |||||||||||| |||||||| | |||| || ||| ||| |||||||||| ||||| |  ||||||    
T  18670 atcgcctcatgatttcgacagcatcatacatgctgaaatcacagatattttctgcgaatttctaccatgggagcctccttggctctgtttcttgacccta 18769  T
Q  180 aactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    ||||| |||||||||||| ||||||||||| ||||||||  |||||||||    
T  18770 aactctccaaaatcgtccataatcatcaccatatgattaccctatcatta 18819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 292
Target Start/End: Original strand, 26679 - 26918
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| ||||| |||   || |||||||||| ||||| |||| ||||| |||||| || || |||||| ||||||| |||||| || ||| |||    
T  26679 ctgtcaaaatcgcctcacgatcactggaatcgcctcacgatttcgacagcatcatacatgctgatattacagatatttctgcgattttctaccatgagag 26778  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaacca 252  Q
     |||||||||| ||||| |  ||||||||||| |||||||| ||| ||||||||| | | ||||||  ||||||||| |||  |||| | ||| |||||     
T  26779 cctccttggctctgtttcttgaccctaaactctccaaaatcatccataatcatcatcatctgattaccctatcattaaaacgttaatccatcactaacct 26878  T
Q  253 actggattattcacccctttcaccgtttaattctatggtt 292  Q
    ||  |||||  ||| | |||||||||| ||||||||||||    
T  26879 acccgattaaccactcttttcaccgttcaattctatggtt 26918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 292
Target Start/End: Original strand, 28061 - 28300
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| ||||| |||   || |||||||||| ||||| |||| ||||| |||||| || || |||||| ||||||| |||||| || ||| |||    
T  28061 ctgtcaaaatcgcctcacgatcactggaatcgcctcacgatttcgacagcatcatacatgctgatattacagatatttctgcgattttctaccatgagag 28160  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaacca 252  Q
     |||||||||| ||||| |  ||||||||||| |||||||| ||| ||||||||| | | ||||||  ||||||||| |||  |||| | ||| |||||     
T  28161 cctccttggctctgtttcttgaccctaaactctccaaaatcatccataatcatcatcatctgattaccctatcattaaaacgttaatccatcactaacct 28260  T
Q  253 actggattattcacccctttcaccgtttaattctatggtt 292  Q
    ||  |||||  ||| | |||||||||| ||||||||||||    
T  28261 acccgattaaccactcttttcaccgttcaattctatggtt 28300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 39155 - 39330
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| ||||||||||| |  |||||||||||||||| ||||  ||||||||||| ||||||||||| |||||||| |||||| || ||| |||    
T  39155 ctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacaga-ttttctgcgattttctaccatgggag 39253  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
     ||||||||||    || |||||||||||||| |||||||| ||| ||| ||||||| ||||||||  |||||||||    
T  39254 cctccttggcttcaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatcatta 39330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 29568 - 29393
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| ||||||||||| |  |||||||||||||||| ||||  ||||||||||| ||||||||||| |||||||| |||||| || ||| |||    
T  29568 ctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacaga-ttttctgcgattttctaccatgggag 29470  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
     ||||||||||    || |||||||||||||| |||||||| ||| ||| ||||||| ||||||||  |||||||||    
T  29469 cctccttggcttcaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatcatta 29393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 34969 - 34794
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| ||||||||||| |  |||||||||||||||| ||||  ||||||||||| ||||||||||| |||||||| |||||| || ||| |||    
T  34969 ctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacaga-ttttctgcgattttctaccatgggag 34871  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
     ||||||||||    || |||||||||||||| |||||||| ||| ||| ||||||| ||||||||  |||||||||    
T  34870 cctccttggcttcaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatcatta 34794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 173984 - 173809
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| ||||||||||| |  |||||||||||||||| ||||  ||||||||||| ||||||||||| |||||||| |||||| || ||| |||    
T  173984 ctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacaga-ttttctgcgattttctaccatgggag 173886  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
     ||||||||||    || |||||||||||||| |||||||| ||| ||| ||||||| ||||||||  |||||||||    
T  173885 cctccttggcttcaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatcatta 173809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 19617049 - 19617224
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| ||||||||||| |  |||||||||||||||| ||||  ||||||||||| ||||||||||| |||||||| |||||| || ||| |||    
T  19617049 ctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacaga-ttttctgcgattttctaccatgggag 19617147  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
     ||||||||||    || |||||||||||||| |||||||| ||| ||| ||||||| ||||||||  |||||||||    
T  19617148 cctccttggcttcaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatcatta 19617224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 293
Target Start/End: Complemental strand, 13745076 - 13744836
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| ||||| |||   || |||||||||| ||||| |||| ||||| |||||| ||||||||  |||||||||| |||||| || ||| |||    
T  13745076 ctgtcaaaatcgcctcacgatcactggaatcgcctcacgatttcgacatcatcatacatgctgaaatcacttatttttctgcgattttctaccatgggag 13744977  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaacca 252  Q
     ||||||||||  |||| |  ||||||||||| |||||||||||| |||| || ||| ||||||||  ||||||||| |||  |||| | ||| |||||     
T  13744976 cctccttggctccgtttcttgaccctaaactctccaaaatcgtccataattataaccatatgattaccctatcattagaacgttaatccatcactaacct 13744877  T
Q  253 actggattattcacccctttcaccgtttaattctatggttc 293  Q
    ||  |||||  ||| | |||||||||| |||||||||||||    
T  13744876 acctgattaaccactcttttcaccgttcaattctatggttc 13744836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 81 - 229
Target Start/End: Complemental strand, 30820528 - 30820380
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaa 180  Q
    ||||| ||| ||||| |||||||||| |||||| |||||||||||||||||||| |||||| || ||| ||| || |||||||  |||| |  ||| |||    
T  30820528 atcgcgtcacgatttcgacaacatcatacatgctgaaatcacagatttttctgcgattttctaccatgggagccttcttggctccgtttcttgaccttaa 30820429  T
Q  181 actcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    |||| |||||||||||| ||||||||||| ||||||||  |||||||||    
T  30820428 actctccaaaatcgtccataatcatcaccgtatgattaccctatcatta 30820380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 218
Target Start/End: Complemental strand, 36685522 - 36685384
Alignment:
Q  80 aatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaacccta 179  Q
    |||||||||| ||||| |||| ||||| |||||| ||||||||| |||||||| | |||||| || ||  ||| ||||||||||  |||| |  ||||||    
T  36685522 aatcgcctcacgatttcgacagcatcatacatgctgaaatcacatatttttctacgattttctaccataggagcctccttggctccgtttcttgacccta 36685423  T
Q  180 aactcaccaaaatcgtccctaatcatcaccctatgatta 218  Q
    ||||| |||||||||||| ||||||||||| ||||||||    
T  36685422 aactctccaaaatcgtccataatcatcaccatatgatta 36685384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 15214257 - 15214406
Alignment:
Q  79 aaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccct 178  Q
    ||||||||||| ||||| |||  ||||| |||||| || || |||||||||||||| |||||| || ||| ||| ||||||||||  ||||||  |||||    
T  15214257 aaatcgcctcacgatttcgaccgcatcatacatgctgatattacagatttttctgcgattttctaccatgggagcctccttggctccgttttttgaccct 15214356  T
Q  179 aaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatt 228  Q
    |||||| |||||||| ||| ||||| ||||| ||||||||  ||||||||    
T  15214357 aaactctccaaaatcatccataatcgtcaccatatgattaccctatcatt 15214406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 27565592 - 27565668
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttt 129  Q
    ||||||||||| ||||||||||| |  |||||||||||||||| ||||  ||||||||||| |||||||||||||||    
T  27565592 ctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacagatttt 27565668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 292
Target Start/End: Original strand, 32772081 - 32772321
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttct-gcaattttccactatgcga 151  Q
    ||||||||||| ||||| |||   || |||||||||| ||||| |||| ||||| |||||| || || |||||||||| | || |||||| || ||| ||    
T  32772081 ctgtcaaaatcgcctcacgatcactggaatcgcctcacgatttcgacagcatcatacatgctgatattacagattttttttgcgattttctaccatggga 32772180  T
Q  152 ggctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaacc 251  Q
    | ||||||||||  ||||||  ||||||||||| |||||||| | | ||||||||| | | ||||||  ||||||||| |||  |||| | ||| |||||    
T  32772181 gcctccttggctccgttttttgaccctaaactctccaaaatcattcataatcatcatcatctgattaccctatcattaaaacgttaatccatcactaacc 32772280  T
Q  252 aactggattattcacccctttcaccgtttaattctatggtt 292  Q
     |   |||||  ||| | |||||||||| ||||||||||||    
T  32772281 tatccgattaaccactcttttcaccgttcaattctatggtt 32772321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 81 - 292
Target Start/End: Original strand, 38828842 - 38829052
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaa 180  Q
    ||||||||| ||||| |||| ||||||||||   | ||| ||||||||| |||| |||||| || ||| ||| ||||||||||   | | | ||||||||    
T  38828842 atcgcctcacgatttcgacagcatcagacatattggaattacagatttt-ctgcgattttctaccatgggagcctccttggctccatctcttaaccctaa 38828940  T
Q  181 actcaccaaaatcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaaccaactggattattcacccctttcaccgttt 280  Q
    |||| |||||||| ||| ||||||||||| ||||||||  ||||||||| |||  |||| | ||| ||||| ||  |||||  ||| | ||||||| ||     
T  38828941 actctccaaaatcatccataatcatcaccatatgattaccctatcattaaaacgttaatccatcactaacctacctgattaaccactcttttcaccattc 38829040  T
Q  281 aattctatggtt 292  Q
    ||||||||||||    
T  38829041 aattctatggtt 38829052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 48273966 - 48274042
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttt 129  Q
    ||||||||||| |||||||||   |  |||||||||||||||| ||||||||||||||| |  |||| |||||||||    
T  48273966 ctgtcaaaatcgcctcatgatcactagaatcgcctcatgatttcgacaacatcagacatactaaaattacagatttt 48274042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 14251693 - 14251637
Alignment:
Q  50 ttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcag 107  Q
    |||||||||||||| |||||||||||  |||||||| |||||| || |||||||||||    
T  14251693 ttgctgtcaaaatcgcctcatgatttgcgaaatcgcttcatga-ttcgacaacatcag 14251637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 18980815 - 18980759
Alignment:
Q  50 ttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcag 107  Q
    |||||||||||||| |||||||||||  |||||||| |||||| || |||||||||||    
T  18980815 ttgctgtcaaaatcgcctcatgatttgcgaaatcgcttcatga-ttcgacaacatcag 18980759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 370548 - 370592
Alignment:
Q  50 ttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgatt 94  Q
    |||||||||||||| |||||||||||  |||||||| ||||||||    
T  370548 ttgctgtcaaaatcgcctcatgatttgcgaaatcgcttcatgatt 370592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 10063512 - 10063436
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttt 129  Q
    ||||||||||| |||||||||   |  |||||||||||||||| |||| |||||||||| |  |||| |||||||||    
T  10063512 ctgtcaaaatcgcctcatgatcactagaatcgcctcatgatttcgacagcatcagacatactaaaattacagatttt 10063436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 13757831 - 13757875
Alignment:
Q  50 ttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgatt 94  Q
    |||||||||||||| |||||||||||  |||||||| ||||||||    
T  13757831 ttgctgtcaaaatcgcctcatgatttgcgaaatcgcttcatgatt 13757875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 15927028 - 15927072
Alignment:
Q  50 ttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgatt 94  Q
    |||||||||||||| |||||||||||  |||||||| ||||||||    
T  15927028 ttgctgtcaaaatcgcctcatgatttgcgaaatcgcttcatgatt 15927072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 27565701 - 27565757
Alignment:
Q  173 aaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    |||||||||||| |||||||| ||| ||| ||||||| ||||||||  |||||||||    
T  27565701 aaccctaaactctccaaaatcatccataaacatcaccatatgattaccctatcatta 27565757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 21542810 - 21542985
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| ||||||||||| |  |||||||||||||||| ||||  ||||||||||| ||||||||||| |||||||| |||||| || ||| |||    
T  21542810 ctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacaga-ttttctgcgattttctaccatgggag 21542908  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
     ||||||||||    || |||||||||||||| |||||||| ||| ||| ||||||| ||||||||  |||||||||    
T  21542909 cctccttggcttcaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatcatta 21542985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 229
Target Start/End: Complemental strand, 42095286 - 42095138
Alignment:
Q  80 aatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaacccta 179  Q
    |||||||||||||||| ||||  ||||||||| |  |||| ||||||||| ||||||||||| || ||| ||| ||||||||||    || |||||||||    
T  42095286 aatcgcctcatgatttcgacagtatcagacatactaaaattacagatttt-ctgcaattttctaccatgggagcctccttggcttcaattctcaacccta 42095188  T
Q  180 aactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    ||||| |||||||| ||| ||| ||||||| ||||||||  |||||||||    
T  42095187 aactctccaaaatcatccataaacatcaccgtatgattaccctatcatta 42095138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 218
Target Start/End: Original strand, 45496750 - 45496853
Alignment:
Q  115 gaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatg 214  Q
    |||||||||||||||||||| |||||| ||||||  || ||||||||||  |||| |  || |||||||| |||||||||||| ||||||||||| ||||    
T  45496750 gaaatcacagatttttctgcgattttctactatggaagcctccttggctccgtttcttgactctaaactctccaaaatcgtccataatcatcaccatatg 45496849  T
Q  215 atta 218  Q
    ||||    
T  45496850 atta 45496853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 229
Target Start/End: Complemental strand, 2332403 - 2332256
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaa 180  Q
    ||||||||| ||||| |||| ||||||||||   ||||| ||| ||||| |||| |||||| || ||| ||| ||||||||||   | | | ||||||||    
T  2332403 atcgcctcacgatttcgacagcatcagacatattgaaattacatatttt-ctgcgattttctaccatgggagcctccttggctccatctcttaaccctaa 2332305  T
Q  181 actcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    |||| |||||||| ||| ||||||||||| | ||||||  |||||||||    
T  2332304 actctccaaaatcatccataatcatcaccatgtgattaccctatcatta 2332256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 42095391 - 42095311
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctg 133  Q
    ||||||||||| ||||||||||  |  |||||||||||||||| ||||  ||||||||| |  |||| |||||||||||||    
T  42095391 ctgtcaaaatcgcctcatgattactagaatcgcctcatgatttcgacagtatcagacatactaaaattacagatttttctg 42095311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 31343985 - 31344071
Alignment:
Q  165 tgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaacc 251  Q
    |||||||| ||||||||||| ||||| ||| ||| ||||||||||||| | |||  ||||||||  |||  ||||||| ||||||||    
T  31343985 tgtttttcgaccctaaactcgccaaactcgccccaaatcatcaccctaaggttaccctatcattccaacactaattctccattaacc 31344071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 17148029 - 17148085
Alignment:
Q  50 ttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcag 107  Q
    |||||||||||||| |||||||||||  |||||||| |||||| || |||||||||||    
T  17148029 ttgctgtcaaaatcgcctcatgatttgcgaaatcgcttcatga-ttcgacaacatcag 17148085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 21995914 - 21995854
Alignment:
Q  196 ccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaaccaactg 256  Q
    |||||||||| |||||||||| || |||||||||||||  ||||| ||||| |||| ||||    
T  21995914 ccctaatcattaccctatgatcaacctatcattataacactaattattcatcaacctactg 21995854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 80 - 293
Target Start/End: Original strand, 10479 - 10693
Alignment:
Q  80 aatcgcctcatgattttgacaacatcagacatgcagaaatcacagattttt-ctgcaattttccactatgcgaggctccttggctatgtttttcaaccct 178  Q
    ||||||||||||||||||||| ||||| |||||  ||||||||| |||||| |||| |||||| || ||| ||| ||||||||||  |||| |  |||||    
T  10479 aatcgcctcatgattttgacagcatcatacatgttgaaatcacaaattttttctgcgattttctaccatgggagtctccttggctccgtttcttgaccct 10578  T
Q  179 aaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaaccaactggattattcacccctttcaccgt 278  Q
    |||||| ||||||| |||| ||||||||||| ||||||||  ||||||||| |||  |||| | ||| ||||| ||  |||||  ||| | |||||||||    
T  10579 aaactctccaaaattgtccataatcatcaccatatgattaccctatcattagaacgttaatccatcactaacctacctgattaaccactcttttcaccgt 10678  T
Q  279 ttaattctatggttc 293  Q
    | |||||||||||||    
T  10679 taaattctatggttc 10693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 292
Target Start/End: Complemental strand, 24046827 - 24046614
Alignment:
Q  79 aaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccct 178  Q
    ||||||||||| ||||| |||| ||||| |||||| || || |||||||||||||| |||||| || ||| ||| |||||||||| ||||| |  |||||    
T  24046827 aaatcgcctcacgatttcgacagcatcatacatgctgatattacagatttttctgcgattttctaccatgggagcctccttggctctgtttcttgaccct 24046728  T
Q  179 aaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaaccaactggattattcacccctttcaccgt 278  Q
    |||||| |||||||| ||| ||||||||||| ||||||||  ||||||||| |||  |||| | ||  ||||| ||  |||||  ||| | |||||||||    
T  24046727 aaactctccaaaatcatccataatcatcaccatatgattaccctatcattaaaacgttaatccatctctaacctacctgattaaccactcttttcaccgt 24046628  T
Q  279 ttaattctatggtt 292  Q
    | ||||||||||||    
T  24046627 tcaattctatggtt 24046614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 11201776 - 11201601
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| ||||||||||| |  |||||||||||||||| ||||  ||||||||||| ||||||||||| |||||||| |||||| || ||| ||     
T  11201776 ctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacaga-ttttctgcgattttctaccatgggaa 11201678  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
     |||||| |||   | | | |||||||||||| |||||||| ||| ||| ||||||| ||||||||  |||||||||    
T  11201677 cctcctttgctccatctcttaaccctaaactctccaaaatcatccataaacatcaccatatgattaccctatcatta 11201601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 11208507 - 11208332
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| ||||||||||| |  |||||||||||||||| ||||  ||||||||||| ||||||||||| |||||||| |||||| || ||| ||     
T  11208507 ctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacaga-ttttctgcgattttctaccatgggaa 11208409  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
     |||||| |||   | | | |||||||||||| |||||||| ||| ||| ||||||| ||||||||  |||||||||    
T  11208408 cctcctttgctccatctcttaaccctaaactctccaaaatcatccataaacatcaccatatgattaccctatcatta 11208332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 81 - 229
Target Start/End: Complemental strand, 56115107 - 56114959
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaa 180  Q
    ||||||||| ||||| |||| ||||| |||||| || || |||||||||||||| |||||| || ||| ||| ||||||||||   ||| | ||||||||    
T  56115107 atcgcctcacgatttcgacagcatcatacatgctgatattacagatttttctgcgattttctaccatgggagcctccttggctccatttcttaaccctaa 56115008  T
Q  181 actcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    |||| |||||||| ||| ||||||||||| ||||||||  |||||||||    
T  56115007 actctccaaaatcatccataatcatcaccatatgattactctatcatta 56114959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 11201853 - 11201795
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacat 111  Q
    ||||||||||| ||||||||||| |  |||||||||||||||| |||| ||||||||||    
T  11201853 ctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagcatcagacat 11201795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 11208584 - 11208526
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacat 111  Q
    ||||||||||| ||||||||||| |  |||||||||||||||| |||| ||||||||||    
T  11208584 ctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagcatcagacat 11208526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 11201930 - 11201872
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacat 111  Q
    ||||||||||| ||||||||||| | ||||||||||||| ||  |||| ||||||||||    
T  11201930 ctgtcaaaatcgcctcatgatttctaaaatcgcctcatgtttccgacagcatcagacat 11201872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 20000184 - 20000240
Alignment:
Q  50 ttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcag 107  Q
    |||||||||||||| |||||||||||  |||||||| |||||| || |||||||||||    
T  20000184 ttgctgtcaaaatcgcctcatgatttgcgaaatcgcttcatga-ttcgacaacatcag 20000240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 8574568 - 8574492
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttt 129  Q
    ||||||||||| |||||||||   |  |||||||||||||||| |||| |||||||||| |  |||| |||||||||    
T  8574568 ctgtcaaaatcgcctcatgatcactagaatcgcctcatgatttcgacagcatcagacatactaaaattacagatttt 8574492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 81 - 229
Target Start/End: Complemental strand, 8759789 - 8759641
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaa 180  Q
    ||||||||||||||| |||| |||||||||||| ||||||||| |||||||||| |||||| || ||| ||| ||||||||||  |||| | ||||||||    
T  8759789 atcgcctcatgatttcgacagcatcagacatgctgaaatcacatatttttctgcgattttctaccatgggagcctccttggctccgtttgttaaccctaa 8759690  T
Q  181 actcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    |||| |||||||| |   ||||||||||| ||||||||  |||||||||    
T  8759689 actctccaaaatcattgataatcatcaccatatgattaccctatcatta 8759641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 292
Target Start/End: Original strand, 1254538 - 1254749
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaa 180  Q
    ||||||||| ||||| |||| ||||| |||||| || || |||||||||||||| |||||| || ||| |||  |||||||||  ||||||  |||||||    
T  1254538 atcgcctcacgatttcgacagcatcatacatgctgatattacagatttttctgcgattttctaccatgggagcatccttggctccgttttttgaccctaa 1254637  T
Q  181 actcaccaaaatcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaaccaactggattattcacccctttcaccgttt 280  Q
    |||| |||||||| ||| ||||||||||| ||||||||  ||||||||  |||  |||| | ||| ||||| ||  |||||  ||| | ||||||||||     
T  1254638 actctccaaaatcatccataatcatcaccatatgattaccctatcattgaaacattaatccatcactaacctacccgattaaccactcttttcaccgttc 1254737  T
Q  281 aattctatggtt 292  Q
    ||||||||||||    
T  1254738 aattctatggtt 1254749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 229
Target Start/End: Original strand, 7430304 - 7430451
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaa 180  Q
    ||||||||| ||||| |||| |||||||||| | ||||  ||||||||| |||| |||||| || ||| ||| ||||||||||  |||| | ||||||||    
T  7430304 atcgcctcacgatttcgacagcatcagacatactgaaagtacagatttt-ctgcgattttctaccatgggagcctccttggctccgtttcttaaccctaa 7430402  T
Q  181 actcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    |||| |||||||| ||| ||||||||||| ||||||||  |||||||||    
T  7430403 actctccaaaatcatccataatcatcaccatatgattaccctatcatta 7430451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 83 - 229
Target Start/End: Complemental strand, 8767533 - 8767388
Alignment:
Q  83 cgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaaac 182  Q
    ||||||||||||| |||| ||||||||||   ||||| ||||||||| |||| |||||| || ||| ||| ||||||||||  |||| | ||||||||||    
T  8767533 cgcctcatgatttcgacagcatcagacatattgaaattacagatttt-ctgcgattttctaccatgggagcctccttggctccgtttcttaaccctaaac 8767435  T
Q  183 tcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    || | |||||| ||| ||||||||||| ||||||||  |||||||||    
T  8767434 tctctaaaatcatccataatcatcaccatatgattaccctatcatta 8767388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 293
Target Start/End: Complemental strand, 34140888 - 34140686
Alignment:
Q  92 attttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgttt-ttcaaccctaaactcaccaaa 190  Q
    |||| |||| ||||| |||||| ||||||||| |||||| ||| |||||| || ||| ||| ||||||||||  |||| || | |||||||||| |||||    
T  34140888 atttcgacagcatcatacatgctgaaatcacatatttttttgcgattttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaa 34140789  T
Q  191 atcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaaccaactggattattcacccctttcaccgtttaattctatgg 290  Q
    ||||||| |||| |||||| ||||||||  ||||||||| |||  |||| | ||| ||||| ||   ||||  ||| | |||||||||| ||||||||||    
T  34140788 atcgtccataattatcaccatatgattaccctatcattagaacgttaatccctcactaacctacctaattaaccactcatttcaccgttcaattctatgg 34140689  T
Q  291 ttc 293  Q
    |||    
T  34140688 ttc 34140686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 293
Target Start/End: Complemental strand, 34153504 - 34153302
Alignment:
Q  92 attttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgttt-ttcaaccctaaactcaccaaa 190  Q
    |||| |||| ||||| |||||| ||||||||| |||||| ||| |||||| || ||| ||| ||||||||||  |||| || | |||||||||| |||||    
T  34153504 atttcgacagcatcatacatgctgaaatcacatatttttttgcgattttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaa 34153405  T
Q  191 atcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaaccaactggattattcacccctttcaccgtttaattctatgg 290  Q
    ||||||| |||| |||||| ||||||||  ||||||||| |||  |||| | ||| ||||| ||   ||||  ||| | |||||||||| ||||||||||    
T  34153404 atcgtccataattatcaccatatgattaccctatcattagaacgttaatccctcactaacctacctaattaaccactcatttcaccgttcaattctatgg 34153305  T
Q  291 ttc 293  Q
    |||    
T  34153304 ttc 34153302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 228
Target Start/End: Complemental strand, 34296539 - 34296391
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatg-tttttcaacccta 179  Q
    ||||||||| ||||| |||| ||||| |||||| || || |||||||||||||| |||||| || ||| ||| ||||||||||  | |||||  ||| ||    
T  34296539 atcgcctcacgatttcgacagcatcatacatgctgatattacagatttttctgcgattttctaccatgggagcctccttggctgcgtttttttgacctta 34296440  T
Q  180 aactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatt 228  Q
    || || |||||||| ||| ||||| | ||| ||||||||  ||||||||    
T  34296439 aattctccaaaatcatccataatccttaccatatgattaccctatcatt 34296391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 229
Target Start/End: Complemental strand, 14593928 - 14593826
Alignment:
Q  127 ttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatca 226  Q
    |||||||| |||||| || ||| ||  ||||||||||   ||| | |||||||||||| |||||||| ||| ||||||||||| ||||||||  ||||||    
T  14593928 ttttctgcgattttctaccatgggaacctccttggctccatttcttaaccctaaactctccaaaatcatccataatcatcaccatatgattaccctatca 14593829  T
Q  227 tta 229  Q
    |||    
T  14593828 tta 14593826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 23977230 - 23977286
Alignment:
Q  50 ttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcag 107  Q
    ||||||||||||||||||||||||||  |||||||| |||||| || |||||||||||    
T  23977230 ttgctgtcaaaatcacctcatgatttgcgaaatcgcttcatga-ttcgacaacatcag 23977286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 7680947 - 7680865
Alignment:
Q  48 acttgctgtcaaaatcacctcatgatttttgaaa-tcgcctcatgattttgacaacatcagacatgcagaaatcacagatttt 129  Q
    |||||||||||||||| | |||||||||   ||| |||| |||||||||||| | |||||||||| | ||||| |||||||||    
T  7680947 acttgctgtcaaaatcgcttcatgatttggaaaaatcgcttcatgattttgatagcatcagacatactgaaattacagatttt 7680865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 16231353 - 16231409
Alignment:
Q  50 ttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcag 107  Q
    |||||||||||||| |||||||||||  |||||||| |||||| || |||||||||||    
T  16231353 ttgctgtcaaaatcgcctcatgatttgcgaaatcgcttcatga-ttcgacaacatcag 16231409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 292
Target Start/End: Original strand, 750 - 989
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| |||||||||  |||  ||||||||| ||||| |||| ||||| | |||| || ||  ||||||||||||| |||||| || ||| |||    
T  750 ctgtcaaaatcgcctcatgatcattgggatcgcctcacgatttcgacagcatcatatatgctgatattgcagatttttctgcgattttctaccatgggag 849  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaacca 252  Q
     ||||||||||  ||||||  ||||||||||| | |||||| ||| ||||||||||| ||||||||  ||||||||  |||  |||| | ||| |||||     
T  850 cctccttggctccgttttttgaccctaaactctctaaaatcatccataatcatcaccatatgattaccctatcattgaaacgttaatccatcactaacct 949  T
Q  253 actggattattcacccctttcaccgtttaattctatggtt 292  Q
    ||  |||||  ||| | |||||||||| ||||||||||||    
T  950 acccgattaaccactcttttcaccgttcaattctatggtt 989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 81 - 229
Target Start/End: Complemental strand, 123832 - 123685
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaa 180  Q
    ||||||||||||||| |||| ||||||||||   ||||| ||||||||| |||| |||||| || ||| ||| ||||||||||  |||| | ||||||||    
T  123832 atcgcctcatgatttcgacagcatcagacatattgaaattacagatttt-ctgcgattttctaccatgggagcctccttggctccgtttcttaaccctaa 123734  T
Q  181 actcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    |||| |||||||| ||| ||||||||||| ||||||||  |||||||||    
T  123733 actctccaaaatcatccataatcatcaccatatgattaccctatcatta 123685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 79 - 292
Target Start/End: Complemental strand, 17551 - 17338
Alignment:
Q  79 aaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccct 178  Q
    ||||||||||| ||||| |||| ||||| |||||| || || ||| |||||||||| |||||| || ||| ||| ||||||||||  |||| |  |||||    
T  17551 aaatcgcctcacgatttcgacagcatcatacatgctgatattacatatttttctgcgattttctaccatgggagcctccttggctccgtttcttgaccct 17452  T
Q  179 aaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaaccaactggattattcacccctttcaccgt 278  Q
    |||||| |||||||| | | ||||||||||| ||||||||  ||||||||| |||  |||| | ||  ||||| ||  |||||  ||| | |||||||||    
T  17451 aaactctccaaaatcattcataatcatcaccatatgattaccctatcattaaaactttaatccatctctaacctacctgattaaccactcttttcaccgt 17352  T
Q  279 ttaattctatggtt 292  Q
    | ||||||||||||    
T  17351 tcaattctatggtt 17338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 81 - 229
Target Start/End: Complemental strand, 22450 - 22302
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaa 180  Q
    |||||||||  |||| |||  ||||| |||||| || || |||||||||||||| |||||  || ||| ||| |||||||||| ||||| |  |||||||    
T  22450 atcgcctcactatttcgactgcatcatacatgctgatattacagatttttctgcgattttataccatgggagcctccttggctctgtttcttgaccctaa 22351  T
Q  181 actcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    |||| |||||||| ||| ||||||||||| ||||||||  |||||||||    
T  22350 actctccaaaatcatccataatcatcaccatatgattaccctatcatta 22302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0546 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0546
Description:

Target: scaffold0546; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 229
Target Start/End: Complemental strand, 10188 - 10040
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaa 180  Q
    |||||||||  |||| |||| ||||| |||||| || || |||||||||||||| |||||| || ||| ||| ||||||||||   ||| | ||||||||    
T  10188 atcgcctcacaatttcgacagcatcatacatgctgatattacagatttttctgcgattttctaccatgggagcctccttggctcgatttcttaaccctaa 10089  T
Q  181 actcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    |||| |||||||| ||| ||||||||||| ||||||||  |||||||||    
T  10088 actctccaaaatcatccataatcatcaccatatgattaccctatcatta 10040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 229
Target Start/End: Original strand, 3119 - 3267
Alignment:
Q  81 atcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgaggctccttggctatgtttttcaaccctaa 180  Q
    |||||||||  |||| |||| ||||| |||||| || || |||||||||||||| |||||| || ||| ||| ||||||||||   ||| | ||||||||    
T  3119 atcgcctcacaatttcgacagcatcatacatgctgatattacagatttttctgcgattttctaccatgggagcctccttggctcgatttcttaaccctaa 3218  T
Q  181 actcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
    |||| |||||||| ||| ||||||||||| ||||||||  |||||||||    
T  3219 actctccaaaatcatccataatcatcaccatatgattaccctatcatta 3267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 53 - 292
Target Start/End: Original strand, 7636 - 7875
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| ||||| |||   || |||||||||| ||||| |||| ||||| || ||  || || |||||||||||||| |||||| || ||| |||    
T  7636 ctgtcaaaatcgcctcacgatcactggaatcgcctcacgatttcgacagcatcatacgtgttgatattacagatttttctgcgattttctaccatgggag 7735  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaacca 252  Q
     ||||||||||  |||| |  ||||||||||| |||||||  ||| ||||||||||| ||||||||  ||||||||| |||  |||| | ||| |||||     
T  7736 cctccttggctccgtttcttgaccctaaactctccaaaataatccataatcatcaccatatgattaccctatcattaaaacgttaatccatcactaacct 7835  T
Q  253 actggattattcacccctttcaccgtttaattctatggtt 292  Q
    ||  |||||  ||| | |||| ||||| ||||||||||||    
T  7836 acctgattaaccactcttttccccgttcaattctatggtt 7875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 46402 - 46227
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| ||||||||||| |  |||||||||||||||| ||||  ||||||||| |  |||| ||| ||||| |||| |||||| || ||| ||     
T  46402 ctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatcctaaaattacacatttt-ctgcgattttctaccatgggaa 46304  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
     ||||||||||    || |||||||||||||| |||||||| ||| ||| ||||||| ||||||||  |||||||||    
T  46303 cctccttggctccaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatcatta 46227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 51806 - 51631
Alignment:
Q  53 ctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagacatgcagaaatcacagatttttctgcaattttccactatgcgag 152  Q
    ||||||||||| ||||||||||| |  |||||||||||||||| ||||  ||||||||| |  |||| ||| ||||| |||| |||||| || ||| ||     
T  51806 ctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatcctaaaattacacatttt-ctgcgattttctaccatgggaa 51708  T
Q  153 gctccttggctatgtttttcaaccctaaactcaccaaaatcgtccctaatcatcaccctatgattaaactatcatta 229  Q
     ||||||||||    || |||||||||||||| |||||||| ||| ||| ||||||| ||||||||  |||||||||    
T  51707 cctccttggctccaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatcatta 51631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 12732 - 12802
Alignment:
Q  52 gctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgacaacatcagac-atgcagaaatca 121  Q
    |||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||| ||||||||||||    
T  12732 gctgtcaaaatcgcctcatgatttgtgaaatcgcttcatgatttcgacaacatcagactatgcagaaatca 12802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0436 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0436
Description:

Target: scaffold0436; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 67 - 15
Alignment:
Q  48 acttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgattttgaca 100  Q
    |||||||||||||||| ||||||||| | ||||||||| ||||||||||||||    
T  67 acttgctgtcaaaatcgcctcatgatctgtgaaatcgcttcatgattttgaca 15  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 1740 - 1806
Alignment:
Q  196 ccctaatcatcaccctatgattaaactatcattataaccgtaattcttcattaaccaactggattat 262  Q
    |||||||||| |||||||||| || |||||||||||||  ||||| ||||| |||| |||| |||||    
T  1740 ccctaatcattaccctatgatcaacctatcattataacactaattattcatcaacctactgtattat 1806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 54882 - 54926
Alignment:
Q  50 ttgctgtcaaaatcacctcatgatttttgaaatcgcctcatgatt 94  Q
    |||||||||||||| |||||||||||  |||||||| ||||||||    
T  54882 ttgctgtcaaaatcgcctcatgatttgcgaaatcgcttcatgatt 54926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1131 times since January 2019
Visitors: 6710