View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0880_high_1 (Length: 539)

Name: NF0880_high_1
Description: NF0880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0880_high_1
NF0880_high_1
[»] chr5 (37 HSPs)
chr5 (30-312)||(26319005-26319285)
chr5 (30-332)||(37094863-37095167)
chr5 (155-262)||(25746964-25747071)
chr5 (156-312)||(15799112-15799270)
chr5 (162-312)||(6156618-6156770)
chr5 (182-332)||(26190400-26190552)
chr5 (183-332)||(27212575-27212726)
chr5 (179-332)||(33487478-33487632)
chr5 (156-243)||(14111854-14111942)
chr5 (109-312)||(36359608-36359820)
chr5 (156-312)||(4064796-4064954)
chr5 (156-255)||(39524721-39524821)
chr5 (156-262)||(20891551-20891658)
chr5 (156-254)||(40620066-40620165)
chr5 (179-252)||(38692881-38692955)
chr5 (155-243)||(34440691-34440779)
chr5 (175-262)||(38871609-38871697)
chr5 (188-262)||(12465214-12465289)
chr5 (95-223)||(38640700-38640833)
chr5 (162-332)||(15957618-15957788)
chr5 (182-262)||(38372247-38372328)
chr5 (155-223)||(24203759-24203827)
chr5 (179-262)||(28083477-28083561)
chr5 (273-322)||(34440621-34440670)
chr5 (177-256)||(26095035-26095115)
chr5 (273-332)||(1350459-1350518)
chr5 (156-223)||(29862590-29862657)
chr5 (91-141)||(28445415-28445465)
chr5 (274-332)||(28445609-28445667)
chr5 (154-243)||(37183856-37183946)
chr5 (203-304)||(31929229-31929331)
chr5 (177-256)||(32842069-32842149)
chr5 (156-254)||(8032217-8032316)
chr5 (91-141)||(16429133-16429183)
chr5 (91-148)||(8739198-8739255)
chr5 (179-239)||(31221438-31221499)
chr5 (91-148)||(38640988-38641045)
[»] chr2 (21 HSPs)
chr2 (366-532)||(33366314-33366480)
chr2 (30-243)||(33366923-33367134)
chr2 (158-332)||(36949018-36949194)
chr2 (156-262)||(17474870-17474977)
chr2 (156-262)||(45153862-45153969)
chr2 (95-241)||(25715362-25715510)
chr2 (181-262)||(39447138-39447220)
chr2 (156-257)||(15995184-15995287)
chr2 (179-262)||(25217884-25217968)
chr2 (156-243)||(36874980-36875068)
chr2 (91-262)||(9847425-9847603)
chr2 (179-252)||(4268332-4268406)
chr2 (180-332)||(34517006-34517159)
chr2 (179-262)||(33452537-33452621)
chr2 (156-262)||(44465798-44465906)
chr2 (156-262)||(32187940-32188047)
chr2 (181-262)||(41510524-41510606)
chr2 (156-237)||(42894378-42894460)
chr2 (91-148)||(9847217-9847274)
chr2 (177-262)||(5507392-5507480)
chr2 (156-243)||(41854970-41855058)
[»] chr1 (31 HSPs)
chr1 (30-243)||(30829419-30829629)
chr1 (30-243)||(24471267-24471478)
chr1 (91-262)||(43319201-43319379)
chr1 (155-332)||(18583619-18583798)
chr1 (179-331)||(49786175-49786329)
chr1 (173-254)||(44573189-44573271)
chr1 (182-332)||(23442643-23442795)
chr1 (155-262)||(33611485-33611593)
chr1 (155-262)||(40908009-40908117)
chr1 (156-262)||(32817687-32817794)
chr1 (175-257)||(42545948-42546031)
chr1 (156-262)||(45567952-45568059)
chr1 (177-312)||(6223834-6223972)
chr1 (156-312)||(34162797-34162956)
chr1 (179-315)||(41584769-41584907)
chr1 (91-148)||(43318990-43319047)
chr1 (156-262)||(40650751-40650858)
chr1 (180-246)||(49677475-49677542)
chr1 (156-316)||(17000300-17000461)
chr1 (92-140)||(9445897-9445945)
chr1 (175-332)||(38950186-38950333)
chr1 (190-332)||(27794760-27794903)
chr1 (181-255)||(28866732-28866806)
chr1 (92-141)||(800603-800652)
chr1 (179-262)||(15069941-15070025)
chr1 (180-243)||(32542391-32542455)
chr1 (273-332)||(24471499-24471558)
chr1 (162-262)||(45046933-45047033)
chr1 (194-262)||(52744931-52745000)
chr1 (156-252)||(7011195-7011293)
chr1 (360-390)||(30829739-30829769)
[»] chr6 (16 HSPs)
chr6 (155-322)||(32035028-32035197)
chr6 (156-332)||(5699464-5699641)
chr6 (181-332)||(33413448-33413600)
chr6 (156-262)||(17264386-17264493)
chr6 (156-332)||(24604438-24604617)
chr6 (175-262)||(7412804-7412892)
chr6 (156-312)||(23406721-23406879)
chr6 (156-255)||(14587636-14587736)
chr6 (156-251)||(3717359-3717455)
chr6 (91-139)||(17500967-17501015)
chr6 (164-262)||(4508386-4508485)
chr6 (156-262)||(2813300-2813409)
chr6 (177-256)||(9905100-9905180)
chr6 (182-222)||(5638879-5638919)
chr6 (181-262)||(1945630-1945712)
chr6 (91-141)||(17501175-17501225)
[»] chr7 (24 HSPs)
chr7 (175-332)||(3304853-3305013)
chr7 (155-261)||(8154876-8154983)
chr7 (156-262)||(43737100-43737207)
chr7 (155-332)||(47202399-47202578)
chr7 (156-312)||(42925717-42925875)
chr7 (156-262)||(24042264-24042371)
chr7 (156-252)||(19225674-19225771)
chr7 (156-316)||(28230544-28230705)
chr7 (156-262)||(3936084-3936191)
chr7 (156-257)||(37518371-37518473)
chr7 (179-262)||(36408347-36408431)
chr7 (218-334)||(28346051-28346167)
chr7 (175-261)||(33574129-33574216)
chr7 (155-262)||(36629181-36629289)
chr7 (179-322)||(31642956-31643101)
chr7 (156-262)||(6467671-6467780)
chr7 (156-262)||(36468613-36468719)
chr7 (155-243)||(33151201-33151292)
chr7 (273-332)||(8214703-8214762)
chr7 (156-223)||(31985594-31985661)
chr7 (92-141)||(5730987-5731036)
chr7 (177-223)||(26555138-26555184)
chr7 (184-252)||(42877149-42877218)
chr7 (95-143)||(5731199-5731247)
[»] chr3 (36 HSPs)
chr3 (155-333)||(47301923-47302103)
chr3 (156-250)||(34821419-34821514)
chr3 (109-332)||(48303896-48304127)
chr3 (156-332)||(51258308-51258485)
chr3 (156-312)||(3902882-3903040)
chr3 (156-257)||(39149791-39149892)
chr3 (155-257)||(35142055-35142158)
chr3 (91-262)||(45244365-45244539)
chr3 (175-262)||(3937364-3937452)
chr3 (156-254)||(47740008-47740107)
chr3 (156-257)||(38977824-38977926)
chr3 (179-312)||(2358721-2358857)
chr3 (179-252)||(501240-501314)
chr3 (155-331)||(28872910-28873087)
chr3 (182-257)||(33438503-33438578)
chr3 (180-332)||(49096327-49096480)
chr3 (179-262)||(51540713-51540797)
chr3 (156-262)||(50716228-50716335)
chr3 (156-262)||(50796512-50796619)
chr3 (182-262)||(3352168-3352249)
chr3 (156-316)||(30721881-30722048)
chr3 (89-223)||(32024999-32025139)
chr3 (182-243)||(52777226-52777287)
chr3 (273-332)||(52777146-52777205)
chr3 (99-262)||(44085434-44085605)
chr3 (95-148)||(45244691-45244744)
chr3 (156-262)||(46622860-46622968)
chr3 (196-262)||(34821512-34821579)
chr3 (273-331)||(32024878-32024936)
chr3 (155-208)||(43473044-43473097)
chr3 (95-148)||(8735278-8735331)
chr3 (91-140)||(8735493-8735542)
chr3 (95-148)||(9087519-9087572)
chr3 (91-140)||(9087734-9087783)
chr3 (210-262)||(47123082-47123135)
chr3 (210-262)||(47130448-47130501)
[»] chr8 (22 HSPs)
chr8 (155-262)||(31519967-31520075)
chr8 (91-262)||(7971002-7971180)
chr8 (91-311)||(41530595-41530824)
chr8 (155-332)||(21004295-21004473)
chr8 (156-262)||(3094657-3094764)
chr8 (156-262)||(27928017-27928124)
chr8 (156-262)||(44106199-44106306)
chr8 (162-262)||(8885535-8885636)
chr8 (156-262)||(37248534-37248641)
chr8 (91-148)||(24627666-24627723)
chr8 (38-91)||(16705068-16705120)
chr8 (186-258)||(34853309-34853382)
chr8 (146-262)||(36404222-36404337)
chr8 (162-257)||(28916764-28916860)
chr8 (177-256)||(35676635-35676715)
chr8 (156-262)||(42280967-42281077)
chr8 (162-223)||(40994808-40994869)
chr8 (91-223)||(31234739-31234876)
chr8 (180-262)||(16310575-16310658)
chr8 (91-141)||(31234528-31234578)
chr8 (179-243)||(11698385-11698450)
chr8 (286-315)||(41328502-41328531)
[»] scaffold0137 (1 HSPs)
scaffold0137 (156-262)||(9573-9680)
[»] chr4 (30 HSPs)
chr4 (155-332)||(23523819-23523998)
chr4 (155-312)||(49396941-49397100)
chr4 (179-262)||(29822603-29822687)
chr4 (179-322)||(32441734-32441879)
chr4 (156-317)||(38536098-38536261)
chr4 (177-331)||(38416479-38416635)
chr4 (188-332)||(6228919-6229065)
chr4 (181-257)||(17933238-17933315)
chr4 (155-243)||(34972867-34972956)
chr4 (154-262)||(48319139-48319247)
chr4 (157-332)||(6003748-6003927)
chr4 (156-257)||(46440350-46440452)
chr4 (156-312)||(3703326-3703484)
chr4 (156-312)||(25539024-25539182)
chr4 (156-262)||(19835504-19835611)
chr4 (162-262)||(7931642-7931743)
chr4 (156-252)||(25491471-25491568)
chr4 (175-255)||(25752539-25752620)
chr4 (154-262)||(54631537-54631646)
chr4 (156-262)||(2506107-2506215)
chr4 (156-262)||(40703648-40703755)
chr4 (156-251)||(8106387-8106483)
chr4 (273-332)||(41413270-41413329)
chr4 (200-262)||(50392529-50392592)
chr4 (273-332)||(34972787-34972846)
chr4 (91-141)||(25140725-25140775)
chr4 (156-218)||(31582498-31582560)
chr4 (197-257)||(53894108-53894169)
chr4 (179-211)||(41413199-41413231)
chr4 (89-141)||(42660383-42660435)
[»] scaffold0027 (1 HSPs)
scaffold0027 (156-254)||(142039-142138)
[»] scaffold0508 (1 HSPs)
scaffold0508 (179-252)||(3494-3568)
[»] scaffold0182 (1 HSPs)
scaffold0182 (156-262)||(23098-23205)
[»] scaffold0016 (1 HSPs)
scaffold0016 (91-148)||(205816-205873)


Alignment Details
Target: chr5 (Bit Score: 149; Significance: 2e-78; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 30 - 312
Target Start/End: Complemental strand, 26319285 - 26319005
Alignment:
Q  30 aacacaagcacaaagagaactagtaacaatacatgaaggcaaatgtgatatgaaactattattacaaacatgtttagatttggtgctggtgttgtccgga 129  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||   |||||||||| |||||||||||||||| ||| ||||    
T  26319285 aacacaagcacaaagagaactagtaacaatacatgaaggtaaatgtgatatgaaactgtta---caaacatgttcagatttggtgctggtgctgtacgga 26319189  T
Q  130 ttacgtaatccggattgcaccatagaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaagttt 229  Q
    ||||||||||||||||||||||| ||||||| |||||| ||| | |||||||||||||||||||| |||||||||||||||| | |||||||  ||||||    
T  26319188 ttacgtaatccggattgcaccatggaaaaaagggtgtttagggggttttcggattatgtaatccggaaacatcatgtaacgcaccctattttggaagttt 26319089  T
Q  230 ctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 312  Q
    | |||| ||||||| ||||||||||||||||| |       || |||||||||||||||||| |||| |  |||||||||||||    
T  26319088 ccggataacaaaatccggaaaaatccgtaactccatttttcaccctataacaaaggaaaacaccattccgaattatgaaatccg 26319005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 30 - 332
Target Start/End: Original strand, 37094863 - 37095167
Alignment:
Q  30 aacacaagcacaaagagaactagtaacaatacatgaaggcaaatgtgatatgaaactattattacaaacatgtttagatttggtgctggtgt------tg 123  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||   |||||||||| ||| ||||||||||||       ||    
T  37094863 aacacaagcacaaagagaactagtaacaatacatgaaagcaaatgtgatatgaaactgtta---caaacatgttcagaattggtgctggtgcagttgctg 37094959  T
Q  124 tccggattacgtaatccggattgcaccatagaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt 223  Q
    | ||||||||||||||||||||||||||| ||||||| |||||| | | | ||||||||||  |||||||| ||||||||||||||||||  ||||||||    
T  37094960 ttcggattacgtaatccggattgcaccatggaaaaaagggtgtttaaggg-ttttcggatttggtaatccggaaacatcatgtaacgcgccttatttttt 37095058  T
Q  224 aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaa 322  Q
    ||||||  |||||||||||| ||||||||||||||||| |       || |||||||||||| ||||| |||| | ||||||||||| |||||| |||||    
T  37095059 aagttttcggattacaaaatccggaaaaatccgtaactccatttttcaccctataacaaagg-aaacaccattccggattatgaaattcgaaaacctcaa 37095157  T
Q  323 agacattttt 332  Q
     | |||||||    
T  37095158 gggcattttt 37095167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 155 - 262
Target Start/End: Complemental strand, 25747071 - 25746964
Alignment:
Q  155 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaattcggaaaaatc 254  Q
    ||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||    
T  25747071 aaaaaatggtgtttaggggatttccggattatgtaatccgaaaacatcatgtaacgcgccctatttttgaagtttccggattagaaaatccggaaaaatc 25746972  T
Q  255 cgtaactc 262  Q
    ||| ||||    
T  25746971 cgttactc 25746964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 156 - 312
Target Start/End: Complemental strand, 15799270 - 15799112
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | |||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| |||||||| |    
T  15799270 aaaaagggtgtttagggggttttcggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacc 15799171  T
Q  255 cgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 312  Q
    ||||||| |       || |||||||||||||||| | |||| | ||||||||||||||    
T  15799170 cgtaactccatttttcaccctataacaaaggaaaataccattccggattatgaaatccg 15799112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 162 - 312
Target Start/End: Complemental strand, 6156770 - 6156618
Alignment:
Q  162 ggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaac 260  Q
    |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| |||||||| |||||||    
T  6156770 ggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgtaac 6156671  T
Q  261 t-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 312  Q
    | |       ||  ||||||||||||||||| |||| | ||||||||||||||    
T  6156670 tccatttttcaccatataacaaaggaaaacaccattccggattatgaaatccg 6156618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 182 - 332
Target Start/End: Original strand, 26190400 - 26190552
Alignment:
Q  182 attatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctataac 279  Q
    |||||||||||||||||||||||||||||| | ||||||||| ||||||| |||||||||||| ||||||||||||||||| |       || | ||||     
T  26190400 attatgtaatccgaaaacatcatgtaacgcaccctattttttgaagtttccggattacaaaatccggaaaaatccgtaactccatttttcacccgataag 26190499  T
Q  280 aaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    ||||||||||| |||| ||||||||||| || | ||| ||||| |||||||||    
T  26190500 aaaggaaaacaccattccagattatgaagtctggaaacctcaaggacattttt 26190552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 183 - 332
Target Start/End: Complemental strand, 27212726 - 27212575
Alignment:
Q  183 ttatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttct-ggattacaaaattcggaaaaatccgtaactcnnnnnnn-actctataaca 280  Q
    |||||||||||||||| |||||||||||| | ||||||||| || || | |||||||||||| || ||||| |||||||||        || ||||||||    
T  27212726 ttatgtaatccgaaaaaatcatgtaacgcaccctattttttgagattttcggattacaaaatccgaaaaaacccgtaactcattttttcaccctataaca 27212627  T
Q  281 aaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    ||||||||||||| ||| ||||||||||||||||||| |||||| |||||||    
T  27212626 aaggaaaacatcagttcggattatgaaatccgaaaatttcaaaggcattttt 27212575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 179 - 332
Target Start/End: Complemental strand, 33487632 - 33487478
Alignment:
Q  179 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctat 276  Q
    |||||||||||| ||||||||||||| |||||||| ||||||||| ||||||  ||||||||||||||||||||| |||||||| |       || || |    
T  33487632 cggattatgtaacccgaaaacatcatataacgcgccctattttttgaagttttcggattacaaaattcggaaaaacccgtaactccatttttcaccctgt 33487533  T
Q  277 aacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    |||||||||||||| |||| | |||||||||||||| ||| ||||| |||||||||    
T  33487532 aacaaaggaaaacaccattccggattatgaaatccggaaa-ctcaaggacattttt 33487478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 156 - 243
Target Start/End: Complemental strand, 14111942 - 14111854
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaat 243  Q
    ||||| |||||| ||| ||||||| ||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  14111942 aaaaagggtgtttaggggattttcagattatgtaatccaaaaacatcatgtaacgcgccctattttttgaagtttctggattacaaaat 14111854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 109 - 312
Target Start/End: Original strand, 36359608 - 36359820
Alignment:
Q  109 ttggtgctggtgttgtccggattacgtaatccggattgca------ccat-agaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacat 201  Q
    |||||| |||||||||| ||||||||||||| ||||||||      |||| | |||||| |||||| ||| | ||||| |||||||||||||||||| ||    
T  36359608 ttggtgatggtgttgtctggattacgtaatctggattgcatcaacaccatgaaaaaaaaaggtgtttagggggttttcagattatgtaatccgaaaaaat 36359707  T
Q  202 catgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactcnnnnnnnactctataacaaaggaaaaca-tcatttcag 299  Q
    ||||| |||||  ||||||||| || ||||||||||||||||| || |||| ||||||||||       || || ||||||| |||||||  |||| |||    
T  36359708 catgttacgcgtcctattttttgagatttctggattacaaaatccgaaaaattccgtaactcatttttcaccctttaacaaaagaaaacacccattccag 36359807  T
Q  300 attatgaaatccg 312  Q
    |||||||||||||    
T  36359808 attatgaaatccg 36359820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 156 - 312
Target Start/End: Original strand, 4064796 - 4064954
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | ||| |||||||||||||||| ||||||||| |||| ||| ||||||||| ||||||| |||||||| ||| |||||||| |    
T  4064796 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatctaacacgccctattttttaaagtttccggattacataatccggaaaaacc 4064895  T
Q  255 cgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 312  Q
    ||||||| |       || |||||||||||||||||| |||| | ||||||||||||||    
T  4064896 cgtaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatccg 4064954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 156 - 255
Target Start/End: Complemental strand, 39524821 - 39524721
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | ||| || |||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||||||||| ||||||||||    
T  39524821 aaaaagggtgtttagggggtttccgaattatgtaatccgaaaacatcatgtaacacgccctatttttttaagtttccggattacaaaatccggaaaaatc 39524722  T
Q  255 c 255  Q
    |    
T  39524721 c 39524721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 262
Target Start/End: Complemental strand, 20891658 - 20891551
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | ||||||||||||||||| || ||||||||||||||  || ||||||||| ||||||| |||||||||||| ||||||||||    
T  20891658 aaaaagggtgtttagggggttttcggattatgtaattcggaaacatcatgtaacatgccctattttttgaagtttccggattacaaaatccggaaaaatc 20891559  T
Q  255 cgtaactc 262  Q
    ||| ||||    
T  20891558 cgttactc 20891551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 40620066 - 40620165
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||||| |||| ||| | ||| |||||||||||||||||||||||||| ||||| || ||||||||| ||||||| |||||||||||| ||||||||||    
T  40620066 aaaaatgatgtttagggggtttccggattatgtaatccgaaaacatcatataacgtgccctattttttgaagtttccggattacaaaatccggaaaaatc 40620165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 38692881 - 38692955
Alignment:
Q  179 cggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaa 252  Q
    |||||||||||||||| |||||||| ||||||||| ||| ||||||||||||| |||||||||||||||||||||    
T  38692881 cggattatgtaatccggaaacatcacgtaacgcgccctatttttttaagtttccggattacaaaattcggaaaaa 38692955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 34440779 - 34440691
Alignment:
Q  155 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaat 243  Q
    |||||| |||||| ||| | ||||||||||||| ||||||||||||||||||||||||  |||||||| ||||||  ||||||||||||    
T  34440779 aaaaaagggtgtttagggggttttcggattatgcaatccgaaaacatcatgtaacgcgtcctatttttgaagttttcggattacaaaat 34440691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 175 - 262
Target Start/End: Complemental strand, 38871697 - 38871609
Alignment:
Q  175 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctatttt-ttaagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    |||||||||||||||||||| |||||||||||||||| | ||||||| | ||||||  |||||||||||| ||||||||||||| ||||    
T  38871697 ttttcggattatgtaatccggaaacatcatgtaacgccccctattttatgaagttttcggattacaaaatccggaaaaatccgttactc 38871609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 12465214 - 12465289
Alignment:
Q  188 taatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    ||||||| |||||||||||||| ||| ||||||||| ||||||| |||||||||||| ||||||||||||||||||    
T  12465214 taatccggaaacatcatgtaacacgccctattttttgaagtttccggattacaaaatccggaaaaatccgtaactc 12465289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 223
Target Start/End: Complemental strand, 38640833 - 38640700
Alignment:
Q  95 aaacatgtttagatttggtgctggtgttgtccggattacgtaatccggatt------gcaccatagaaaaaatggtgttcaggcgattttcggattatgt 188  Q
    ||||||||| ||| |||||| ||||| ||||||||||||||||||||||||      |||||||  |||||| |||||| ||| | | ||||||||||||    
T  38640833 aaacatgttcagaattggtgttggtgctgtccggattacgtaatccggattgcatcagcaccatgaaaaaaagggtgtttagg-ggtgttcggattatgt 38640735  T
Q  189 aatccgaaaacatcatgtaacgcgctctatttttt 223  Q
    |||||||| | ||||| |||||||| |||||||||    
T  38640734 aatccgaataaatcatttaacgcgccctatttttt 38640700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 332
Target Start/End: Complemental strand, 15957788 - 15957618
Alignment:
Q  162 ggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttt-taagtttctggattacaaaattcggaaaaatccgtaac 260  Q
    |||||| ||| | ||| |||||||| ||||||| |||||||||||||  ||| ||||||||  ||||||| | |||||||||| ||||||||||| | ||    
T  15957788 ggtgtttagggggtttccggattatttaatccggaaacatcatgtaatacgccctatttttcgaagtttccgaattacaaaatccggaaaaatccattac 15957689  T
Q  261 tcnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    ||       || || ||||||| ||||||| |||||| |||||| ||||||||||| ||||||| |||||||    
T  15957688 tcatttttcaccctttaacaaaagaaaacaccatttcggattataaaatccgaaaa-ctcaaaggcattttt 15957618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 38372328 - 38372247
Alignment:
Q  182 attatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    ||||||||||||| |||||||||||||| ||| ||| ||||||||||||| |||||||||||| | ||||||||||| ||||    
T  38372328 attatgtaatccggaaacatcatgtaacccgccctatttttttaagtttccggattacaaaatccagaaaaatccgttactc 38372247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 24203759 - 24203827
Alignment:
Q  155 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt 223  Q
    |||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| |||||||||    
T  24203759 aaaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctatttttt 24203827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 28083477 - 28083561
Alignment:
Q  179 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    |||||||||||||||| ||| ||||||||| |||| ||||||||| || |||| |||||||||||| |||||||| |||| ||||    
T  28083477 cggattatgtaatccggaaatatcatgtaatgcgccctattttttgaattttccggattacaaaatccggaaaaacccgttactc 28083561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 273 - 322
Target Start/End: Complemental strand, 34440670 - 34440621
Alignment:
Q  273 ctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaa 322  Q
    ||||||||||||||||||||||||||||||||||||| || ||| |||||    
T  34440670 ctataacaaaggaaaacatcatttcagattatgaaattcggaaacctcaa 34440621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 26095115 - 26095035
Alignment:
Q  177 ttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccg 256  Q
    |||||||||||||||||||||| |  |||||||||||||||||||||   |||| |||||||||||||  | |||||||||    
T  26095115 ttcggattatgtaatccgaaaaaaatatgtaacgcgctctattttttgtggtttttggattacaaaatcagaaaaaatccg 26095035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 1350459 - 1350518
Alignment:
Q  273 ctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    |||||||||||||||||| || ||| ||||||||||||||||||| |||| | |||||||    
T  1350459 ctataacaaaggaaaacaccagttcggattatgaaatccgaaaatttcaagggcattttt 1350518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 29862657 - 29862590
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt 223  Q
    |||||||||||| ||| | ||| |||||||||||||||| ||||||||  |||||||| |||||||||    
T  29862657 aaaaatggtgtttagggggtttccggattatgtaatccggaaacatcacctaacgcgccctatttttt 29862590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 28445415 - 28445465
Alignment:
Q  91 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccg 141  Q
    ||||||||||||| ||| || ||||||||| ||||||||||||||||||||    
T  28445415 ttacaaacatgttcagaattcgtgctggtgatgtccggattacgtaatccg 28445465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 332
Target Start/End: Original strand, 28445609 - 28445667
Alignment:
Q  274 tataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    |||||||||||||||||| | ||| |||| | ||||||||||||||||| |||||||||    
T  28445609 tataacaaaggaaaacattagttcggattttaaaatccgaaaatctcaaggacattttt 28445667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 37183856 - 37183946
Alignment:
Q  154 gaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaat 243  Q
    ||||||| |||||| ||  | ||| |||||||||||||| ||||| ||||||||||| || ||||||||| |||||||  |||||||||||    
T  37183856 gaaaaaagggtgtttagagggtttccggattatgtaatctgaaaatatcatgtaacgtgccctattttttgaagtttcaagattacaaaat 37183946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 203 - 304
Target Start/End: Original strand, 31929229 - 31929331
Alignment:
Q  203 atgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactcnnnnnnnactctataacaaaggaaaacatcatttcagat 301  Q
    |||||| |||| ||||||||| || ||||||||||||||||| ||||||||||||| ||||       || || ||||||| |||||||||||| | |||    
T  31929229 atgtaatgcgccctattttttgaaatttctggattacaaaatccggaaaaatccgttactcatttttcaccctttaacaaaagaaaacatcattccggat 31929328  T
Q  302 tat 304  Q
    |||    
T  31929329 tat 31929331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 32842069 - 32842149
Alignment:
Q  177 ttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccg 256  Q
    ||||||||||||||||   ||| || || || ||||| ||||||||| ||||||| |||||||||||| ||||||||||||    
T  32842069 ttcggattatgtaatcttgaaaaattatctagcgcgccctattttttgaagtttccggattacaaaatccggaaaaatccg 32842149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 254
Target Start/End: Complemental strand, 8032316 - 8032217
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | | |||||||||||||||||| ||| ||||||||| | || ||||||||| || ||||  ||||||||||| || |||||||    
T  8032316 aaaaagggtgtttaggaggtgttcggattatgtaatccggaaaaatcatgtaatgtgccctattttttgaaatttccagattacaaaatccgaaaaaatc 8032217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 16429183 - 16429133
Alignment:
Q  91 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccg 141  Q
    ||||||||||||||||| |||||| ||||| |||  |||||||||||||||    
T  16429183 ttacaaacatgtttagaattggtgttggtgctgtttggattacgtaatccg 16429133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 8739198 - 8739255
Alignment:
Q  91 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca 148  Q
    ||||||||||||| ||| ||||||||||||  ||  ||||||||||||||| ||||||    
T  8739198 ttacaaacatgttcagaattggtgctggtgcagtttggattacgtaatccgaattgca 8739255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 31221438 - 31221499
Alignment:
Q  179 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattaca 239  Q
    |||||||||||||||  ||||||||||||||||||  |||||||| ||||||  ||||||||    
T  31221438 cggattatgtaatccagaaacatcatgtaacgcgccatattttttgaagttttcggattaca 31221499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 38641045 - 38640988
Alignment:
Q  91 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca 148  Q
    ||||||||||||| ||| |||||| ||||| |||||| |||| ||||||| |||||||    
T  38641045 ttacaaacatgttcagaattggtgttggtgctgtccgaattatgtaatccagattgca 38640988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 147; Significance: 3e-77; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 366 - 532
Target Start/End: Complemental strand, 33366480 - 33366314
Alignment:
Q  366 atagggtgggaaaagtaatactcccgaaagaatgaaggtactataacaacaaaaatggaagatagagagattttgaattttgcttaataacgaaatttac 465  Q
    ||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33366480 ataggatggaaaaagtaatactcctgaaagaatgaaggtactataacaacaaaaatggaagatagagagattttgaattttgcttaataacgaaatttac 33366381  T
Q  466 tacatttattgatatattacgaaattactgtttaacccaagtctctttctcactctatttcatctca 532  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  33366380 tacatttattgatatattacgaagttactgtttaacccaagtctctttctcactctatttcttctca 33366314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 30 - 243
Target Start/End: Complemental strand, 33367134 - 33366923
Alignment:
Q  30 aacacaagcacaaagagaactagtaacaatacatgaaggcaaatgtgatatgaaactattattacaaacatgtttagatttggtgctggtgttgtccgga 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||| ||| |||||||||||| | ||||||    
T  33367134 aacacaagcacaaagagaactagtaacaatacatgaaggcaaatgtgatatgaaact---attacaaacatgttcagaattggtgctggtgctatccgga 33367038  T
Q  130 ttacgtaatccggattgcaccatag-aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtt 228  Q
    ||||||||||||| ||||||||| | |||||| |||||| ||| | |||||||||||||||||||| ||| |||||||||||||   ||||||| |||||    
T  33367037 ttacgtaatccggtttgcaccatggaaaaaaaaggtgttaagggggttttcggattatgtaatccggaaatatcatgtaacgcgtcttatttttgaagtt 33366938  T
Q  229 tctggattacaaaat 243  Q
    |  ||||||||||||    
T  33366937 ttcggattacaaaat 33366923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 158 - 332
Target Start/End: Original strand, 36949018 - 36949194
Alignment:
Q  158 aaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccg 256  Q
    |||||||||| ||| | ||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||   ||||||||||| ||||||||||||    
T  36949018 aaatggtgtttagggggtttccggattatgtaatccgaaaacatcatgtaacgcgccctattttttgaagtttgcagattacaaaatccggaaaaatccg 36949117  T
Q  257 taact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    ||||| |       || |||||||||||||||||| |||| | |||||||||||| | ||| ||||||  |||||||    
T  36949118 taactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatctggaaacctcaaatgcattttt 36949194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 17474870 - 17474977
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    |||||| ||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| ||||||||||    
T  17474870 aaaaattgtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttaaagtttccggattacaaaatccggaaaaatc 17474969  T
Q  255 cgtaactc 262  Q
    ||| ||||    
T  17474970 cgttactc 17474977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 45153862 - 45153969
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| |||||||  ||||||||||||| |||||| |    
T  45153862 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccagattacaaaattcagaaaaacc 45153961  T
Q  255 cgtaactc 262  Q
    ||| ||||    
T  45153962 cgttactc 45153969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 95 - 241
Target Start/End: Complemental strand, 25715510 - 25715362
Alignment:
Q  95 aaacatgtttagatttggtgctggtgttgtccggattacgtaatccggatt------gcaccatagaaaaaatggtgttcaggcgattttcggattatgt 188  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||      |||||||  |||||||||||||       | ||||||||||||    
T  25715510 aaacatgtttagaattggtgttggtgttgtccggattacgtaatccggattgcatcagcaccatgaaaaaaatggtgtt-----tgtgttcggattatgt 25715416  T
Q  189 aatccgaaaacatcatgtaacgcgctctattttttaag-tttctggattacaaa 241  Q
    |||||||||| |||| ||||||||| |||| |||| || ||| |||||||||||    
T  25715415 aatccgaaaaaatcaggtaacgcgccctatcttttgagatttttggattacaaa 25715362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 39447220 - 39447138
Alignment:
Q  181 gattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    |||||||||||||||||||||||||||| |||| ||||||||| ||||||  |||||||||||| ||||||||||||| ||||    
T  39447220 gattatgtaatccgaaaacatcatgtaatgcgccctattttttgaagttttcggattacaaaatccggaaaaatccgttactc 39447138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 156 - 257
Target Start/End: Original strand, 15995184 - 15995287
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt--aagtttctggattacaaaattcggaaaaat 253  Q
    ||||| |||||| ||| | |||||||||||||||||||| |||||||||| ||||||| |||||||||  |||||||  ||||||||||| ||||||||     
T  15995184 aaaaagggtgtttagggggttttcggattatgtaatccggaaacatcatgcaacgcgccctatttttttgaagtttcccgattacaaaatccggaaaaac 15995283  T
Q  254 ccgt 257  Q
    ||||    
T  15995284 ccgt 15995287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 25217884 - 25217968
Alignment:
Q  179 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    |||||||||||||||| |||||||||||||||| | ||||||||| ||||||| |||||||||||| || |||||||||| ||||    
T  25217884 cggattatgtaatccggaaacatcatgtaacgcaccctattttttgaagtttccggattacaaaatccgaaaaaatccgttactc 25217968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 156 - 243
Target Start/End: Complemental strand, 36875068 - 36874980
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaat 243  Q
    |||||||||||||||  | ||| |||||||||||||||| |||||||||||||||||  ||||||||| ||||||| ||||||||||||    
T  36875068 aaaaatggtgttcagagggtttccggattatgtaatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaat 36874980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 91 - 262
Target Start/End: Original strand, 9847425 - 9847603
Alignment:
Q  91 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca------ccatagaaaaaatggtgttcaggcgattttcggatt 184  Q
    ||||||| ||||||||| |||||| ||||| ||||| ||||||||||||| |||||||      ||||  |||||| ||||||  |  | | ||||||||    
T  9847425 ttacaaatatgtttagaattggtgttggtgctgtccagattacgtaatccagattgcatcagcaccatgaaaaaaaaggtgtttggatggtgttcggatt 9847524  T
Q  185 atgtaatccgaaaacatcatgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactc 262  Q
    ||||||| |||||| |||||||||||||| | ||||||| || |||  ||||||||||||  ||||||||| |||||||    
T  9847525 atgtaatacgaaaaaatcatgtaacgcgcccaattttttgagattttcggattacaaaatctggaaaaatcagtaactc 9847603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 4268332 - 4268406
Alignment:
Q  179 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaa 252  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||| || |||||    
T  4268332 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttttggattacaaaatccgaaaaaa 4268406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 180 - 332
Target Start/End: Complemental strand, 34517159 - 34517006
Alignment:
Q  180 ggattatgtaatccgaaaacatcatgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactc-nnnnnnnactctata 277  Q
    ||||||||||||||||||| |||||||||||||| ||||||||| || ||| | ||||||||||| || |||||| ||||||||        ||  ||||    
T  34517159 ggattatgtaatccgaaaa-atcatgtaacgcgccctattttttgagatttttcgattacaaaatccgaaaaaattcgtaactcattttttcaccgtata 34517061  T
Q  278 acaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    ||||||||||||| || ||| || |||||||||||||||  |||||| |||||||    
T  34517060 acaaaggaaaacaccagttcggaatatgaaatccgaaaacttcaaaggcattttt 34517006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 33452537 - 33452621
Alignment:
Q  179 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    |||||||||| ||||| |||||||||||||||||| ||||||||| ||||||| | |||||||||| | ||||||||||| ||||    
T  33452537 cggattatgtgatccggaaacatcatgtaacgcgccctattttttgaagtttccgaattacaaaatccagaaaaatccgttactc 33452621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 44465798 - 44465906
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaac-atcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 253  Q
    ||||| |||||| ||| | ||| |||| ||||||||||  |||| |||||||||||||| ||||||||| ||||||| |||||||||||| |||||||||    
T  44465798 aaaaagggtgtttagggggtttccggagtatgtaatccataaactatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaat 44465897  T
Q  254 ccgtaactc 262  Q
    |||| ||||    
T  44465898 ccgttactc 44465906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 32187940 - 32188047
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||||||||||  || | ||| |||||||||||||||| |||||||||||||| ||| ||||||||| |||||||  ||||||||||| | |||||| |    
T  32187940 aaaaatggtgtttcgggggtttccggattatgtaatccggaaacatcatgtaactcgccctattttttgaagtttccagattacaaaatccagaaaaacc 32188039  T
Q  255 cgtaactc 262  Q
    ||| ||||    
T  32188040 cgttactc 32188047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 262
Target Start/End: Original strand, 41510524 - 41510606
Alignment:
Q  181 gattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    |||||||||||||  |||||||||||||||||| ||||||||| ||||||| ||||||| ||||  |||||||||||| ||||    
T  41510524 gattatgtaatccagaaacatcatgtaacgcgccctattttttgaagtttccggattacgaaatctggaaaaatccgttactc 41510606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 42894460 - 42894378
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggatta 237  Q
    |||||||||||| ||| | ||| |||||||||||||||| |||||||||||||||||  ||| ||||||||||||| ||||||    
T  42894460 aaaaatggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgtcctatttttttaagtttccggatta 42894378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 9847217 - 9847274
Alignment:
Q  91 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca 148  Q
    ||||||||||||| ||| |||||| ||||||||||| |||||||||||||||||||||    
T  9847217 ttacaaacatgttcagaattggtgttggtgttgtccagattacgtaatccggattgca 9847274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 262
Target Start/End: Complemental strand, 5507480 - 5507392
Alignment:
Q  177 ttcggattatgtaatccgaaaaca--tcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    |||||||||| ||||||||||| |  ||||||||||||   |||||||| |||||| |||||||||||||||| ||||||| |||||||    
T  5507480 ttcggattatataatccgaaaaaaaatcatgtaacgcgtcttattttttgaagtttttggattacaaaattcgaaaaaatctgtaactc 5507392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 41854970 - 41855058
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaat 243  Q
    ||||| |||||| ||| | ||| ||||| |||||||||| |||||||||||||| | | ||||||||| ||||||| ||||||||||||    
T  41854970 aaaaagggtgtttagggggtttccggatcatgtaatccggaaacatcatgtaacacaccctattttttgaagtttccggattacaaaat 41855058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 4e-73; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 30 - 243
Target Start/End: Original strand, 30829419 - 30829629
Alignment:
Q  30 aacacaagcacaaagagaactagtaacaatacatgaaggcaaatgtgatatgaaactattattacaaacatgtttagatttggtgctggtgttgtccgga 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||   |||||||||| ||| | |||||||||| ||||||||    
T  30829419 aacacaagcacaaagagaactagtaacaatacatgaaggcaaatgtgatatgaaactgtta---caaacatgttcagaatcggtgctggtgctgtccgga 30829515  T
Q  130 ttacgtaatccggattgcaccatagaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaagttt 229  Q
    |||||||||  |||||||||||| ||||||| |||||| ||| | ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  30829516 ttacgtaatttggattgcaccatggaaaaaagggtgtttagggggttttcggattatgtaatccgaaaacatcatgtaacgcgccctatttttgaagttt 30829615  T
Q  230 ctggattacaaaat 243  Q
    | ||||||||||||    
T  30829616 ccggattacaaaat 30829629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 30 - 243
Target Start/End: Original strand, 24471267 - 24471478
Alignment:
Q  30 aacacaagcacaaagagaactagtaacaatacatgaaggcaaatgtgatatgaaactattattacaaacatgtttagatttggtgctggtgttgtccgga 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | ||||||||||||| ||| ||| |||||||| |||||| |    
T  24471267 aacacaagcacaaagagaactagtaacaatacatgaaggcaaatgtgatatgaaac---tgttacaaacatgttcagaattgatgctggtgctgtccgaa 24471363  T
Q  130 ttacgtaatccggattgcaccatagaaaaaatggtgttca-ggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtt 228  Q
    |||||||||||||||| |||||| ||||||| |||||| | || | |||||||||||||||||||| |||||||||||||||||| |||||||| |||||    
T  24471364 ttacgtaatccggattacaccatggaaaaaagggtgtttaggggggttttcggattatgtaatccggaaacatcatgtaacgcgccctatttttgaagtt 24471463  T
Q  229 tctggattacaaaat 243  Q
    |||||||||||||||    
T  24471464 tctggattacaaaat 24471478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 91 - 262
Target Start/End: Original strand, 43319201 - 43319379
Alignment:
Q  91 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca------ccatagaaaaaatggtgttcaggcgattttcggatt 184  Q
    ||||||||||||| ||| |||||| ||||| |||||||||||||||||||||||||||      ||||  ||||||  ||||| ||| | ||||||||||    
T  43319201 ttacaaacatgttcagaattggtgatggtgctgtccggattacgtaatccggattgcatcagcaccatgaaaaaaagagtgtttagggggttttcggatt 43319300  T
Q  185 atgtaatccgaaaacatcatgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactc 262  Q
    |||||||||||||| ||||||||||||||  |||||||| || |||| |||||||||||| ||||||||||||||||||    
T  43319301 atgtaatccgaaaaaatcatgtaacgcgccatatttttttagatttccggattacaaaatccggaaaaatccgtaactc 43319379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 155 - 332
Target Start/End: Original strand, 18583619 - 18583798
Alignment:
Q  155 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaat 253  Q
    |||||| |||||| ||| | ||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||  ||||||||||| ||||||| |    
T  18583619 aaaaaaaggtgtttagggggtttccggattatgtaatccgaaaacatcatgtaacgcgccctatttttttaagtttccagattacaaaatccggaaaagt 18583718  T
Q  254 ccgtaac-tcnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    ||||||| ||       || |||||||||||||||||| |||| | |||||||||||||||||| ||||| | |||||||    
T  18583719 ccgtaacttcatttttcaccctataacaaaggaaaacaccattccggattatgaaatccgaaaacctcaagggcattttt 18583798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 179 - 331
Target Start/End: Complemental strand, 49786329 - 49786175
Alignment:
Q  179 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctat 276  Q
    |||||||||||||||| |||||||||||||||||  ||||||||| ||||||  ||||| |||||| ||||||||||| ||||| |       || ||||    
T  49786329 cggattatgtaatccggaaacatcatgtaacgcgtcctattttttaaagttttcggattgcaaaatccggaaaaatccataactccatttttcaccctat 49786230  T
Q  277 aacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacatttt 331  Q
    || |||||||||||  ||| |||||||||||||||| ||| ||||||||||||||    
T  49786229 aataaaggaaaacacaattccagattatgaaatccggaaacctcaaagacatttt 49786175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 44573189 - 44573271
Alignment:
Q  173 gattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||| || |||||||    
T  44573189 gatttccggattatgtaatccgaaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccgaaaaaatc 44573271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 182 - 332
Target Start/End: Complemental strand, 23442795 - 23442643
Alignment:
Q  182 attatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctataac 279  Q
    ||||| ||||||| |||||||||||||||||| ||||||||| |||||||  ||||| ||||| ||||||||||||||||| |       ||  ||||||    
T  23442795 attatataatccggaaacatcatgtaacgcgccctattttttgaagtttccagattataaaatccggaaaaatccgtaactccatttttcaccttataac 23442696  T
Q  280 aaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    |||||||||||||||| | ||| |||||||||| ||| ||||| | |||||||    
T  23442695 aaaggaaaacatcattccggataatgaaatccggaaacctcaagggcattttt 23442643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 155 - 262
Target Start/End: Original strand, 33611485 - 33611593
Alignment:
Q  155 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 253  Q
    |||||| |||||| ||| | ||| | |||||||||||||| |||||||||||||||||| ||||||||| |||||||   |||||||||| || ||||||    
T  33611485 aaaaaagggtgtttagggggtttccagattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccaaattacaaaatccgaaaaaat 33611584  T
Q  254 ccgtaactc 262  Q
    |||||||||    
T  33611585 ccgtaactc 33611593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 155 - 262
Target Start/End: Original strand, 40908009 - 40908117
Alignment:
Q  155 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 253  Q
    |||||| |||||| ||| | ||||||||||||||||||||||||||||||||| | ||| | ||||||| ||||||| ||||| ||||||||  ||||||    
T  40908009 aaaaaagggtgtttagggggttttcggattatgtaatccgaaaacatcatgtagcacgcccaattttttgaagtttccggattgcaaaattctaaaaaat 40908108  T
Q  254 ccgtaactc 262  Q
    |||| ||||    
T  40908109 ccgttactc 40908117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 32817687 - 32817794
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | |||||||||||||||||| | ||||||||||||| |||| ||||||||| ||||||| ||||||||||||  ||||||| |    
T  32817687 aaaaagggtgtttagggggttttcggattatgtaatctggaaacatcatgtaatgcgccctattttttgaagtttccggattacaaaatctggaaaaacc 32817786  T
Q  255 cgtaactc 262  Q
    ||| ||||    
T  32817787 cgttactc 32817794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 175 - 257
Target Start/End: Complemental strand, 42546031 - 42545948
Alignment:
Q  175 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgt 257  Q
    ||||||||| |||| ||||| |||||||||||||||||  ||||||||| ||||||| |||||||||||| |||||||||||||    
T  42546031 ttttcggatcatgttatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaatccggaaaaatccgt 42545948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 45567952 - 45568059
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | ||||||||| ||||||||| |||| |||||||| ||||| ||||||||| ||||||| | ||||||||||||||||||| |    
T  45567952 aaaaagggtgtttagggggttttcggatcatgtaatccaaaaatatcatgtagcgcgccctattttttgaagtttccgaattacaaaattcggaaaaacc 45568051  T
Q  255 cgtaactc 262  Q
    ||| ||||    
T  45568052 cgttactc 45568059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 312
Target Start/End: Original strand, 6223834 - 6223972
Alignment:
Q  177 ttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt--aagtttctggattacaaaattcggaaaaatccgtaactc-nnnnnnnactc 273  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||||||  ||||||  |||||  |||||||| |||||||||||||||        || |    
T  6223834 ttcggattatgtaatccaaaaaaatcatgtaatgcgctctatttttttgaagttttcggattgaaaaattcgaaaaaatccgtaactcattttttcaccc 6223933  T
Q  274 tataacaaaggaaaacatcatttcagattatgaaatccg 312  Q
    |||||||||||||||||  | ||| ||||||||||||||    
T  6223934 tataacaaaggaaaacacgagttcggattatgaaatccg 6223972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 156 - 312
Target Start/End: Original strand, 34162797 - 34162956
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcgg-aaaaat 253  Q
    ||||| |||||| ||| | ||| |||||||||||||||| ||||||||| |||| ||| ||||||||| ||||||| |||||||||||| ||| |||||     
T  34162797 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatctaacacgccctattttttgaagtttccggattacaaaatccggaaaaaac 34162896  T
Q  254 ccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 312  Q
    ||| |||| |       || |||||||||||||||||| |||| | ||||||||||||||    
T  34162897 ccgcaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatccg 34162956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 179 - 315
Target Start/End: Original strand, 41584769 - 41584907
Alignment:
Q  179 cggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaatccgtaac-tcnnnnnnnactctat 276  Q
    |||||||||||||||||||||||||||||||  || ||| ||||| || |||| |||||||||||| | |||||| ||||||| ||       || ||||    
T  41584769 cggattatgtaatccgaaaacatcatgtaacatgccctagtttttgaaatttccggattacaaaatccagaaaaacccgtaacttcatttttcaccctat 41584868  T
Q  277 aacaaaggaaaacatcatttcagattatgaaatccgaaa 315  Q
    |||||| ||||||| |||| | |||||||||||||||||    
T  41584869 aacaaaagaaaacaccattcctgattatgaaatccgaaa 41584907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 43318990 - 43319047
Alignment:
Q  91 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca 148  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||    
T  43318990 ttacaaacatgttcagaattggtgctggtgttgtccagattacgtaatccggattgca 43319047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 40650751 - 40650858
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    |||||||||||| | | | ||| |||||||||||||||  |||||||||||||| ||| ||||||||| ||||||| |||||||||| | || |||||||    
T  40650751 aaaaatggtgtttaaggggtttccggattatgtaatccagaaacatcatgtaacacgccctattttttgaagtttccggattacaaattccgaaaaaatc 40650850  T
Q  255 cgtaactc 262  Q
    ||| ||||    
T  40650851 cgttactc 40650858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 49677542 - 49677475
Alignment:
Q  180 ggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcg 246  Q
    ||||||||||||||| |||||||||||||||||| ||||||||| |||||||  ||||||||||||||    
T  49677542 ggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccagattacaaaattcg 49677475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 316
Target Start/End: Complemental strand, 17000461 - 17000300
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatt-ttttaagtttctggattacaaaattcggaaaaatc 254  Q
    |||||||||||| ||| | ||| |||||||||||||||  ||||||||| ||||| || ||||| ||| | ||||| | |||||||||| |||||||| |    
T  17000461 aaaaatggtgtttagggggtttccggattatgtaatccagaaacatcatctaacgtgccctattatttgatgtttccgaattacaaaatccggaaaaa-c 17000363  T
Q  255 cgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaa 316  Q
    ||||||| |       || |||||||||||||||||| ||||   ||||||||||||||||||    
T  17000362 cgtaactccatttttcaccctataacaaaggaaaacaccattctggattatgaaatccgaaaa 17000300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 9445897 - 9445945
Alignment:
Q  92 tacaaacatgtttagatttggtgctggtgttgtccggattacgtaatcc 140  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  9445897 tacaaagatgtttagaattggtgctggtgttgtccggattacgtaatcc 9445945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 175 - 332
Target Start/End: Complemental strand, 38950333 - 38950186
Alignment:
Q  175 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaattcggaaaaatccgtaactcnnnnnnnactct 274  Q
    |||||||||||||||||| ||||| |||||||||||||| |||||||         |||||||||||||  |||||||||||||||||       ||| |    
T  38950333 ttttcggattatgtaatctgaaaaaatcatgtaacgcgccctatttt---------tggattacaaaatctggaaaaatccgtaactcatttttcact-t 38950244  T
Q  275 ataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
     ||||||||||||| | |||| |  ||||| ||||||| ||| |||||||||||||||    
T  38950243 ttaacaaaggaaaataccattccgaattataaaatccggaaacctcaaagacattttt 38950186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 190 - 332
Target Start/End: Complemental strand, 27794903 - 27794760
Alignment:
Q  190 atccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaattcggaaaaatccgtaactcnnnnnnn-actctataacaaaggaaaa 288  Q
    ||||||||| ||||||||| |||| |||||||| |  |||  ||||||||||||  | |||||||| ||||||        || ||||||||||||||||    
T  27794903 atccgaaaaaatcatgtaaagcgccctatttttgagattttcggattacaaaatctgaaaaaatccataactcattttttcaccctataacaaaggaaaa 27794804  T
Q  289 catcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    || || ||| ||||||||||||||||||| |||| | |||||||    
T  27794803 caccagttcggattatgaaatccgaaaatttcaagggcattttt 27794760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 28866732 - 28866806
Alignment:
Q  181 gattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaattcggaaaaatcc 255  Q
    |||||||||||||| ||| |||||||| ||||| ||||||||||   ||| |||||||||||| |||||||||||    
T  28866732 gattatgtaatccggaaaaatcatgtagcgcgccctattttttatagttccggattacaaaatccggaaaaatcc 28866806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 800603 - 800652
Alignment:
Q  92 tacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccg 141  Q
    ||||||||||||| || |||||| ||||||||||||||||||||||||||    
T  800603 tacaaacatgttttgaattggtgttggtgttgtccggattacgtaatccg 800652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 15069941 - 15070025
Alignment:
Q  179 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    |||||||| ||||||| |||||||||||||| ||  ||||||||| ||||||| |||||||||||| || ||| |||||| ||||    
T  15069941 cggattatataatccggaaacatcatgtaacacgtcctattttttgaagtttccggattacaaaatccgaaaatatccgttactc 15070025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 32542455 - 32542391
Alignment:
Q  180 ggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaat 243  Q
    ||||||||||||||| |||||||||||||||| | ||||||||| ||| ||| ||||||||||||    
T  32542455 ggattatgtaatccgtaaacatcatgtaacgcaccctattttttgaagattccggattacaaaat 32542391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 24471499 - 24471558
Alignment:
Q  273 ctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    |||||||||||||||||| |||| | |||||||||||||| ||| ||||| |||||||||    
T  24471499 ctataacaaaggaaaacaccattccggattatgaaatccggaaacctcaaggacattttt 24471558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 162 - 262
Target Start/End: Original strand, 45046933 - 45047033
Alignment:
Q  162 ggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaac 260  Q
    |||||| ||| | ||| ||||||||||||| || ||||||||||||| | || || |||||| ||||||  |||||||||||| ||||||||||||| ||    
T  45046933 ggtgtttagggggtttccggattatgtaattcggaaacatcatgtaatg-gccctcttttttgaagttttcggattacaaaatccggaaaaatccgttac 45047031  T
Q  261 tc 262  Q
    ||    
T  45047032 tc 45047033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 52744931 - 52745000
Alignment:
Q  194 gaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    ||||| |||||||| ||||| ||||||||| ||||||   ||||||||||||||||||||||||| ||||    
T  52744931 gaaaatatcatgtagcgcgccctattttttgaagttttcagattacaaaattcggaaaaatccgttactc 52745000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 252
Target Start/End: Complemental strand, 7011293 - 7011195
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt--aagtttctggattacaaaattcggaaaaa 252  Q
    ||||||| |||| ||| | |||||||||||  | || || |||||||||||||||||| || ||||||  ||||||| |||||||||||| | ||||||    
T  7011293 aaaaatgatgtttagggggttttcggattacatgattcggaaacatcatgtaacgcgccctttttttttgaagtttccggattacaaaatccagaaaaa 7011195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 390
Target Start/End: Original strand, 30829739 - 30829769
Alignment:
Q  360 aagcttatagggtgggaaaagtaatactccc 390  Q
    |||||||||||||||||||||||||||||||    
T  30829739 aagcttatagggtgggaaaagtaatactccc 30829769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 155 - 322
Target Start/End: Complemental strand, 32035197 - 32035028
Alignment:
Q  155 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 253  Q
    |||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| |||||||||    
T  32035197 aaaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaat 32035098  T
Q  254 ccgtaactcnnnnnnnactc-tataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaa 322  Q
    |||||||||         || ||||||||| |||||||||||| |||||||||||||||||||| |||||    
T  32035097 ccgtaactccatttttcatcatataacaaaagaaaacatcattccagattatgaaatccgaaaacctcaa 32035028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 156 - 332
Target Start/End: Complemental strand, 5699641 - 5699464
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||||| ||||| |    
T  5699641 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttcaagtttccggattacaaaattcgaaaaaacc 5699542  T
Q  255 cgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    ||||||| |       || |||||||||||||||||| |||| | |||||||||||||| ||| |||||||||||||||    
T  5699541 cgtaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatccggaaa-ctcaaagacattttt 5699464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 181 - 332
Target Start/End: Original strand, 33413448 - 33413600
Alignment:
Q  181 gattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctataac 279  Q
    |||||||||||| | |||||||||||||||||| |||||||| ||||||| |||||||||||||| ||||||| ||||||| |       || |||||||    
T  33413448 gattatgtaatctggaaacatcatgtaacgcgccctatttttgaagtttccggattacaaaattcagaaaaattcgtaactccatttttcaccctataac 33413547  T
Q  280 aaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    ||||||||||| |||| | |||||||||||||| |||  |||||| |||||||    
T  33413548 aaaggaaaacaccattccggattatgaaatccggaaacatcaaaggcattttt 33413600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 156 - 262
Target Start/End: Complemental strand, 17264493 - 17264386
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| |||||||  ||||||||||| ||||||||||    
T  17264493 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccagattacaaaatccggaaaaatc 17264394  T
Q  255 cgtaactc 262  Q
    ||| ||||    
T  17264393 cgttactc 17264386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 156 - 332
Target Start/End: Original strand, 24604438 - 24604617
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    |||||||||||| | | | | |||||||||||||||||||| | |||||||||  ||| ||||||||| |||||| ||||||||||||||||||||||||    
T  24604438 aaaaatggtgtttaaggggtgttcggattatgtaatccgaagaaatcatgtaagacgccctattttttgaagtttttggattacaaaattcggaaaaatc 24604537  T
Q  255 cgtaactc--nnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    | ||||||         || |||| ||||||||||||| || ||| || |||||||||||||||  |||| |||||||||    
T  24604538 cttaactcatttttttcaccctatgacaaaggaaaacaccagttcggaatatgaaatccgaaaacttcaaggacattttt 24604617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 175 - 262
Target Start/End: Complemental strand, 7412892 - 7412804
Alignment:
Q  175 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    |||||||||||||||||||| |||||||||||||| ||| ||||||||| ||||||| |||||||||||| |||||||| |||| ||||    
T  7412892 ttttcggattatgtaatccggaaacatcatgtaacacgccctattttttgaagtttccggattacaaaatccggaaaaacccgttactc 7412804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 156 - 312
Target Start/End: Complemental strand, 23406879 - 23406721
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    |||||||||||| ||| | ||| |||||||||||||||  ||||||||  |||||||| ||||||||| ||||||| ||||||| |||||||||||||      
T  23406879 aaaaatggtgtttagggggtttccggattatgtaatccagaaacatcaactaacgcgccctattttttgaagtttccggattacgaaattcggaaaaact 23406780  T
Q  255 cgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 312  Q
    ||||||| |       || |||||||||||||||||| |||| | ||||| ||||||||    
T  23406779 cgtaactccatttttcaccctataacaaaggaaaacaccattccggattacgaaatccg 23406721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 156 - 255
Target Start/End: Original strand, 14587636 - 14587736
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    |||||||||||| ||| | |||  ||||||||||||| | |||||||||||||||||| ||||||||| ||||||  |||||||||||| ||||||||||    
T  14587636 aaaaatggtgtttagggggtttatggattatgtaatcaggaaacatcatgtaacgcgccctattttttaaagttttcggattacaaaatccggaaaaatc 14587735  T
Q  255 c 255  Q
    |    
T  14587736 c 14587736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 3717359 - 3717455
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctct-attttttaagtttctggattacaaaattcggaaaa 251  Q
    |||||| ||||| ||| | ||| | |||||| ||||||| |||||||||||||||||| || |||||| ||||||| ||||||||||||||||||||    
T  3717359 aaaaattgtgtttaggaggtttccagattatataatccggaaacatcatgtaacgcgccctaatttttgaagtttccggattacaaaattcggaaaa 3717455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 17501015 - 17500967
Alignment:
Q  91 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatc 139  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17501015 ttacaaacatgttcagatttggtgctggtgttgtccggattacgtaatc 17500967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 164 - 262
Target Start/End: Original strand, 4508386 - 4508485
Alignment:
Q  164 tgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctct-attttttaagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    |||| ||| ||||| |||||||| ||||||| |||||||||||||| ||| || |||||| || ||||||||||| ||||| ||||||||||||| ||||    
T  4508386 tgtttaggggatttccggattatataatccggaaacatcatgtaacacgccctaatttttgaaatttctggattataaaatccggaaaaatccgttactc 4508485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 2813300 - 2813409
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaa--attcggaaaaa 252  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||| | |  |||||||| ||||||| ||||||||||  || ||||||||    
T  2813300 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacacaccttattttttgaagtttccggattacaaaatatccggaaaaa 2813399  T
Q  253 tccgtaactc 262  Q
    || |||||||    
T  2813400 tctgtaactc 2813409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 9905180 - 9905100
Alignment:
Q  177 ttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccg 256  Q
    |||||||||||||||||| ||| |||| ||| ||||| ||||||||| || |||| | |||||||||| ||||||||||||    
T  9905180 ttcggattatgtaatccggaaaaatcacgtagcgcgccctattttttgaaatttccgaattacaaaatccggaaaaatccg 9905100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 5638919 - 5638879
Alignment:
Q  182 attatgtaatccgaaaacatcatgtaacgcgctctattttt 222  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  5638919 attatgtaatccggaaacatcatgtaacgcgccctattttt 5638879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 181 - 262
Target Start/End: Original strand, 1945630 - 1945712
Alignment:
Q  181 gattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    |||||| ||||||| |||  | ||||||||| | ||| ||||| ||||||  |||||||||||| ||||||||||||||||||    
T  1945630 gattatataatccggaaaatttatgtaacgcaccctagtttttgaagttttcggattacaaaatccggaaaaatccgtaactc 1945712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 17501225 - 17501175
Alignment:
Q  91 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccg 141  Q
    ||||||||||||| ||| ||||| ||| || ||||||||||||||||||||    
T  17501225 ttacaaacatgttcagaattggtcctgatgctgtccggattacgtaatccg 17501175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 175 - 332
Target Start/End: Original strand, 3304853 - 3305013
Alignment:
Q  175 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt--aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnac 271  Q
    |||| ||||||||||||||| ||| |||||||||| | | |||||||||  |||||||||||||||||||| ||||||||||||||||| |       ||    
T  3304853 tttttggattatgtaatccggaaatatcatgtaacacaccctatttttttgaagtttctggattacaaaatccggaaaaatccgtaactccatttttcac 3304952  T
Q  272 tctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
     |||||||||||||||||| |||| || ||||||||||||| |||||||||||||||||||    
T  3304953 cctataacaaaggaaaacaccattccaaattatgaaatccggaaatctcaaagacattttt 3305013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 155 - 261
Target Start/End: Complemental strand, 8154983 - 8154876
Alignment:
Q  155 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 253  Q
    |||||| |||||| ||| | |||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| |||||||||    
T  8154983 aaaaaagggtgtttagggggttttcggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaat 8154884  T
Q  254 ccgtaact 261  Q
    ||||||||    
T  8154883 ccgtaact 8154876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 156 - 262
Target Start/End: Complemental strand, 43737207 - 43737100
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | ||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||| ||||||||||    
T  43737207 aaaaagggtgtttagggggtttccggattatgtaatccgaaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaatc 43737108  T
Q  255 cgtaactc 262  Q
    ||| ||||    
T  43737107 cgttactc 43737100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 155 - 332
Target Start/End: Complemental strand, 47202578 - 47202399
Alignment:
Q  155 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 253  Q
    |||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||  ||||||||||||  ||||||||    
T  47202578 aaaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatctggaaaaat 47202479  T
Q  254 ccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    |||||||| |       || |||||||||| ||||||| |||| | |||||||||||||| ||| ||||| | |||||||    
T  47202478 ccgtaactccatttttcaccctataacaaaagaaaacaccattccggattatgaaatccggaaacctcaagggcattttt 47202399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 156 - 312
Target Start/End: Original strand, 42925717 - 42925875
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | ||| |||||||||||||||||||||||||||||| |||| ||||||||| ||||||| ||||||||||||  ||||||| |    
T  42925717 aaaaaaggtgtttagggggtttccggattatgtaatccgaaaacatcatgtaatgcgccctattttttgaagtttccggattacaaaatcaggaaaaacc 42925816  T
Q  255 cgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 312  Q
    ||||||| |       || |||||||||||||||||| |||| | ||||||||||||||    
T  42925817 cgtaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatccg 42925875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 24042264 - 24042371
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    |||||||||||| ||| | ||| |||||||||||||||| ||||||||||||||||||  |||||||| ||||||| |||||||||||| |||||||| |    
T  24042264 aaaaatggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccttattttttgaagtttccggattacaaaatccggaaaaacc 24042363  T
Q  255 cgtaactc 262  Q
    ||||||||    
T  24042364 cgtaactc 24042371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 19225674 - 19225771
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaa 252  Q
    |||||||||||| ||| ||||| |||||||||||||||| |||||||||||||||| | ||||||||| |||||| ||||||||||||| ||||||||    
T  19225674 aaaaatggtgtttaggggatttccggattatgtaatccggaaacatcatgtaacgcaccctattttttgaagtttttggattacaaaatccggaaaaa 19225771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 156 - 316
Target Start/End: Original strand, 28230544 - 28230705
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||| ||||||||| ||||||||| ||||||| |||||||||||| ||||||||||    
T  28230544 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcaagtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaatc 28230643  T
Q  255 cgtaactcnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaa 316  Q
    ||| ||||       || || ||||||| ||||||| ||||   |||||| |||||||||||    
T  28230644 cgttactcattttttaccctttaacaaaagaaaacaccattctggattataaaatccgaaaa 28230705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 156 - 262
Target Start/End: Complemental strand, 3936191 - 3936084
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | |||| ||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| |||||||| |    
T  3936191 aaaaagggtgtttagggggtttttggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacc 3936092  T
Q  255 cgtaactc 262  Q
    ||| ||||    
T  3936091 cgttactc 3936084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 156 - 257
Target Start/End: Original strand, 37518371 - 37518473
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    |||||||||||| ||| | ||| |||||||||||||||| |||| ||||||||| ||| ||||||||| |||||||||||||| ||||| ||||||||||    
T  37518371 aaaaatggtgtttagggggtttccggattatgtaatccggaaacttcatgtaacacgccctattttttgaagtttctggattataaaatccggaaaaatc 37518470  T
Q  255 cgt 257  Q
    |||    
T  37518471 cgt 37518473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 36408431 - 36408347
Alignment:
Q  179 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    |||||||||||||||| |||||||||||| |||||  |||||||| |||||||||||||||||||| ||||||||||||| ||||    
T  36408431 cggattatgtaatccggaaacatcatgtatcgcgccttattttttgaagtttctggattacaaaatccggaaaaatccgttactc 36408347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 218 - 334
Target Start/End: Complemental strand, 28346167 - 28346051
Alignment:
Q  218 ttttttaagtttctggattacaaaattcggaaaaatccgtaactcnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaat 317  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||        |||| |||||||||||||||||||| ||||||||||||| |  |||     
T  28346167 tttttgaagtttctggattacaaaattcggaaacatccgtaactcatttttttctctttaacaaaggaaaacatcattccagattatgaaattcagaaac 28346068  T
Q  318 ctcaaagacatttttag 334  Q
     |||||| |||||||||    
T  28346067 ttcaaaggcatttttag 28346051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 261
Target Start/End: Original strand, 33574129 - 33574216
Alignment:
Q  175 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaact 261  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| |||||||||||| |  |||||||| |||||    
T  33574129 ttttcggattatgtaatccgaaaacatcatgtaacgcaccctattttttaaagtttccggattacaaaatccaaaaaaatccataact 33574216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 155 - 262
Target Start/End: Complemental strand, 36629289 - 36629181
Alignment:
Q  155 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaat 253  Q
    ||||||||||||| ||  | ||| | |||||||||||||| |||||||||||||||||| ||| ||||||||||| |  ||||||||||| |||||||||    
T  36629289 aaaaaatggtgtttagagggtttccagattatgtaatccggaaacatcatgtaacgcgccctatttttttaagttaccagattacaaaatccggaaaaat 36629190  T
Q  254 ccgtaactc 262  Q
    |||| ||||    
T  36629189 ccgttactc 36629181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 322
Target Start/End: Complemental strand, 31643101 - 31642956
Alignment:
Q  179 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctat 276  Q
    |||||||||||||||| |||||||||||||| | | ||||||||| |||||||   ||||||| || | ||||||||||||||| |       || ||||    
T  31643101 cggattatgtaatccggaaacatcatgtaacacaccctattttttgaagtttccaaattacaagatccagaaaaatccgtaactccatttttcaccctat 31643002  T
Q  277 aacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaa 322  Q
    |||||| ||||||| |||| |||||||||||||||| ||| |||||    
T  31643001 aacaaacgaaaacaccattccagattatgaaatccggaaacctcaa 31642956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 156 - 262
Target Start/End: Complemental strand, 6467780 - 6467671
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaag-tttctgga--ttacaaaattcggaaaaa 252  Q
    ||||| |||||| ||| | | |||||||||||||||||||| | |||||||||| | | ||||||||| || ||||||||  ||||| ||||||||||||    
T  6467780 aaaaagggtgtttagggggtgttcggattatgtaatccgaacaaatcatgtaacacaccctattttttgagatttctggattttacataattcggaaaaa 6467681  T
Q  253 tccgtaactc 262  Q
    ||||||||||    
T  6467680 tccgtaactc 6467671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 36468613 - 36468719
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | ||| |||||||||||||| |||| ||||||||||| ||| ||||||||| |||||||   |||||||||| ||||||||||    
T  36468613 aaaaagggtgtttagggggtttccggattatgtaatctgaaa-catcatgtaacacgccctattttttgaagtttccatattacaaaatccggaaaaatc 36468711  T
Q  255 cgtaactc 262  Q
    ||| ||||    
T  36468712 cgttactc 36468719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 33151292 - 33151201
Alignment:
Q  155 aaaaaatg-gtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta--ttttttaagtttctggattacaaaat 243  Q
    |||||||| ||||| ||| ||||| |||||||||||||||||| ||||||| ||| |||| |||  ||||||||||||| | ||||||||||    
T  33151292 aaaaaatgagtgtttaggggatttccggattatgtaatccgaagacatcatataatgcgccctattttttttaagtttccgaattacaaaat 33151201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 8214703 - 8214762
Alignment:
Q  273 ctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    |||||| ||||||||||| |  |||||||| | |||||||||||||||||||||||||||    
T  8214703 ctataataaaggaaaacaccggttcagattttaaaatccgaaaatctcaaagacattttt 8214762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 31985594 - 31985661
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt 223  Q
    |||||||||||| | | | | |||| ||||||||||||||||| |||||||||||||| |||||||||    
T  31985594 aaaaatggtgtttaaggggtgttcgaattatgtaatccgaaaaaatcatgtaacgcgccctatttttt 31985661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 5730987 - 5731036
Alignment:
Q  92 tacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccg 141  Q
    |||||||||||||||| ||| |||||||| ||||| ||||||||||||||    
T  5730987 tacaaacatgtttagaattgttgctggtggtgtcctgattacgtaatccg 5731036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 26555138 - 26555184
Alignment:
Q  177 ttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt 223  Q
    ||||||||| ||||||| |||| |||||||||||||| |||||||||    
T  26555138 ttcggattaggtaatccaaaaaaatcatgtaacgcgccctatttttt 26555184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 42877149 - 42877218
Alignment:
Q  184 tatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaa 252  Q
    ||||||||||| |||||| ||||||||||| ||| |||||| | ||||  ||||||||||| ||||||||    
T  42877149 tatgtaatccggaaacattatgtaacgcgccctattttttttattttcccgattacaaaatccggaaaaa 42877218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 5731199 - 5731247
Alignment:
Q  95 aaacatgtttagatttggtgctggtgttgtccggattacgtaatccgga 143  Q
    ||||||||| ||| |||||| ||||| ||||| ||||||||||||||||    
T  5731199 aaacatgttcagaattggtgttggtgctgtcccgattacgtaatccgga 5731247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 155 - 333
Target Start/End: Complemental strand, 47302103 - 47301923
Alignment:
Q  155 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaat 253  Q
    |||||| |||||| ||| | |||||||||||||||||||| ||||||||||||||||||  || ||||||||||||| |||||||||||| |||||||||    
T  47302103 aaaaaagggtgtttaggaggttttcggattatgtaatccggaaacatcatgtaacgcgccttatttttttaagtttccggattacaaaatccggaaaaat 47302004  T
Q  254 ccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttta 333  Q
    || ||||| |       || |||||||||||||||||| |||| |  |||||||||||||||||  |||| ||||||||||    
T  47302003 ccataactccatttttcaccctataacaaaggaaaacaccattccgaattatgaaatccgaaaacttcaaggacattttta 47301923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 34821419 - 34821514
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaa 250  Q
    |||||||||||| ||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  34821419 aaaaatggtgtttagggggtttccggattatgtaatccgaaaacatcatgtaacgcgctctattttttgaagtttccggattacaaaattcggaaa 34821514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 109 - 332
Target Start/End: Complemental strand, 48304127 - 48303896
Alignment:
Q  109 ttggtgctggtgttgtccggattacgtaatccggattgca------ccatagaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatc 202  Q
    |||||| ||||| |||| ||||||||||||||||||||||      ||||  ||||||||||||| ||| | |||||||||||||||||| ||||| |||    
T  48304127 ttggtgatggtgctgtctggattacgtaatccggattgcatcaccaccatgaaaaaaatggtgttgagggggttttcggattatgtaatctgaaaaaatc 48304028  T
Q  203 atgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactc-nnnnnnnactctataacaaaggaaaacatcatttcaga 300  Q
    ||||||| | | ||||||||| || |||| |||||||||||| ||||||||||||||||||        || || ||||||||||||||| |||| | ||    
T  48304027 atgtaacacaccctattttttgagatttccggattacaaaatccggaaaaatccgtaactcattttttcaccctttaacaaaggaaaacaccattccgga 48303928  T
Q  301 ttatgaaatccgaaaatctcaaagacattttt 332  Q
    |||||||||| | ||| ||||| | |||||||    
T  48303927 ttatgaaatctggaaacctcaagggcattttt 48303896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 156 - 332
Target Start/End: Complemental strand, 51258485 - 51258308
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    |||||||||||| ||| | | |||||||||||||||||||||| || ||||||||||| ||||||||| || ||| ||||||||||||| ||||||||||    
T  51258485 aaaaatggtgtttagggggtgttcggattatgtaatccgaaaaaattatgtaacgcgccctattttttgaaatttatggattacaaaatccggaaaaatc 51258386  T
Q  255 cgtaactcnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    ||||||||       || || |||||||||||||||  ||| | |||||||||||||  |||  |||| |||||||||    
T  51258385 cgtaactcatttttcaccctttaacaaaggaaaacacaattccggattatgaaatccagaaacttcaaggacattttt 51258308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 156 - 312
Target Start/End: Original strand, 3902882 - 3903040
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | ||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||  |||||||||||| |||||||| |    
T  3902882 aaaaagggtgtttagggggtttccggattatgtaatccaaaaacatcatgtaacgcgctctattttttgaagttttcggattacaaaatccggaaaaacc 3902981  T
Q  255 cgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 312  Q
     |||||| |       || |||||||||||||||||| |||| | ||||||||||||||    
T  3902982 agtaactccacttttcaccctataacaaaggaaaacaccattccggattatgaaatccg 3903040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 156 - 257
Target Start/End: Complemental strand, 39149892 - 39149791
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaattcggaaaaatcc 255  Q
    |||||||||||| ||| | ||| |||||||||||||||| |||||  ||||||||||| ||||||||| ||||||||||||||||||| |||||||||||    
T  39149892 aaaaatggtgtttagggggtttccggattatgtaatccggaaacactatgtaacgcgccctattttttgagtttctggattacaaaatccggaaaaatcc 39149793  T
Q  256 gt 257  Q
    ||    
T  39149792 gt 39149791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 35142158 - 35142055
Alignment:
Q  155 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctct-attttttaagtttctggattacaaaattcggaaaaat 253  Q
    ||||||||||||| ||| | ||| |||||||||||||||| |||||||||||||||||| || |||||| ||||||| |||||||||||  |||||||||    
T  35142158 aaaaaatggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctaatttttgaagtttccggattacaaaacccggaaaaat 35142059  T
Q  254 ccgt 257  Q
    ||||    
T  35142058 ccgt 35142055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 91 - 262
Target Start/End: Complemental strand, 45244539 - 45244365
Alignment:
Q  91 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca------ccatagaaaaaatggtgttcaggcgattttcggatt 184  Q
    ||||||||||||| ||| |||||||| ||| ||||||||||||||||||| |||||||      ||||  |||||| ||||||  |    ||||| ||||    
T  45244539 ttacaaacatgttcagaattggtgctcgtgctgtccggattacgtaatccagattgcatcagcaccatgaaaaaaagggtgtttgg----ttttcagatt 45244444  T
Q  185 atgtaatccgaaaacatcatgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactc 262  Q
    |||||||||||||| |||||||||||||| ||||||||| || |||  | |||||||||| ||||||||||| ||||||    
T  45244443 atgtaatccgaaaaaatcatgtaacgcgccctattttttgagattttcgaattacaaaatccggaaaaatccataactc 45244365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 175 - 262
Target Start/End: Complemental strand, 3937452 - 3937364
Alignment:
Q  175 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    |||||| ||||||||||||  |||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||  ||||||||    
T  3937452 ttttcgaattatgtaatccagaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaattcggaaaaactcgtaactc 3937364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 47740008 - 47740107
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||  |||||||||    
T  47740008 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatctggaaaaatc 47740107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 156 - 257
Target Start/End: Original strand, 38977824 - 38977926
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | ||||||||||||||||||| |||||| |||||||||||| ||||||||| ||||||| ||||||||||||   ||||||||    
T  38977824 aaaaaaggtgtttagggggttttcggattatgtaatcccaaaacaccatgtaacgcgccctattttttgaagtttccggattacaaaatctagaaaaatc 38977923  T
Q  255 cgt 257  Q
    |||    
T  38977924 cgt 38977926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 179 - 312
Target Start/End: Original strand, 2358721 - 2358857
Alignment:
Q  179 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt--aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactcta 275  Q
    |||||||||||| ||| |||||||||||||| ||| |||||||||  ||||||| |||||||||||| | | ||||||||||||| |       || |||    
T  2358721 cggattatgtaagccggaaacatcatgtaacacgccctatttttttgaagtttccggattacaaaatccaggaaaatccgtaactccatttttcacccta 2358820  T
Q  276 taacaaaggaaaacatcatttcagattatgaaatccg 312  Q
    ||||||||||||||| |||| | ||||||||||||||    
T  2358821 taacaaaggaaaacaccattccggattatgaaatccg 2358857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 501240 - 501314
Alignment:
Q  179 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaa 252  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||| ||||||||    
T  501240 cggattatgcaatccggaaacatcatgtaacgcgccctattttttgaagtttttggattacaaaatccggaaaaa 501314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 155 - 331
Target Start/End: Complemental strand, 28873087 - 28872910
Alignment:
Q  155 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 253  Q
    |||||| |||||| ||| | || | ||||||||||||||| |||||| ||||||||||  ||||||||| || |||  |||||| ||||| | ||||||     
T  28873087 aaaaaagggtgtttagggggttgttggattatgtaatccggaaacataatgtaacgcgtcctattttttgaaattttcggattataaaatccagaaaaac 28872988  T
Q  254 ccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacatttt 331  Q
     ||||||| |       || ||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||    
T  28872987 tcgtaacttcatttttcaccctataacaaagaaaaacatcattccagattatgaaatccgaaaa-ctcaaggacatttt 28872910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 33438578 - 33438503
Alignment:
Q  182 attatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgt 257  Q
    ||||||||||||| || ||||||||||||||| ||||||||| |||||| ||||||||||||||| |||||||||||    
T  33438578 attatgtaatccggaa-catcatgtaacgcgccctattttttgaagtttttggattacaaaattcagaaaaatccgt 33438503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 332
Target Start/End: Original strand, 49096327 - 49096480
Alignment:
Q  180 ggattatgtaatccgaaaacatcatgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactcnnnnnnnactctataa 278  Q
    |||||||||||| |||||| ||||||||||  ||  |||||||| || |||| |||||||||||| |||||||||||||||||        || || |||    
T  49096327 ggattatgtaattcgaaaaaatcatgtaacatgccatattttttgagatttccggattacaaaatccggaaaaatccgtaacttatttttcaccctttaa 49096426  T
Q  279 caaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
     |||| ||||||||||| ||||||||||||| || |||  |||| |||||||||    
T  49096427 taaagaaaaacatcattccagattatgaaattcggaaacttcaaggacattttt 49096480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 51540713 - 51540797
Alignment:
Q  179 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    ||||||||||||| || |||||||||||||||||| ||||||||| ||||||| ||||| |||||| | ||||||||||| ||||    
T  51540713 cggattatgtaattcggaaacatcatgtaacgcgccctattttttgaagtttccggattccaaaatccagaaaaatccgttactc 51540797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 156 - 262
Target Start/End: Complemental strand, 50716335 - 50716228
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | ||| |||||||||||||| | |||||||||||||| ||| ||||||||| ||||||  |||||||||||| || ||||| |    
T  50716335 aaaaagggtgtttagggggtttccggattatgtaatctggaaacatcatgtaacacgccctattttttgaagttttcggattacaaaatccgaaaaaacc 50716236  T
Q  255 cgtaactc 262  Q
    ||||||||    
T  50716235 cgtaactc 50716228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 50796512 - 50796619
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | ||| |||||||||||||| | |||||||||||||| ||| ||||||||| ||||||  |||||||||||| || ||||| |    
T  50796512 aaaaagggtgtttagggggtttccggattatgtaatctggaaacatcatgtaacacgccctattttttgaagttttcggattacaaaatccgaaaaaacc 50796611  T
Q  255 cgtaactc 262  Q
    ||||||||    
T  50796612 cgtaactc 50796619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 3352168 - 3352249
Alignment:
Q  182 attatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    ||||||||||||| |||||||||||||||| | ||| |||||||||||||  |||||||||||| |||||||| ||| ||||    
T  3352168 attatgtaatccggaaacatcatgtaacgcaccctatttttttaagtttcctgattacaaaatttggaaaaattcgttactc 3352249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 316
Target Start/End: Original strand, 30721881 - 30722048
Alignment:
Q  156 aaaaatggtgttcaggcgatt-ttcggattatgtaatccgaaaacatcatgtaac---gcgctctatttttt-aagtttctggattacaaaattcggaaa 250  Q
    |||||||||||| ||| || | |||||||||||||||||||||| |||||||||    |||| ||||||||| ||||||  ||||||||||||    |||    
T  30721881 aaaaatggtgtttaggggagtgttcggattatgtaatccgaaaaaatcatgtaatattgcgccctattttttgaagttttcggattacaaaatctaaaaa 30721980  T
Q  251 aatccgtaactcnnnnnnn--actctataacaaaggaaaacatcatttcagattatgaaatccgaaaa 316  Q
     |||| ||||||         ||||||||||||||||||||| || ||||||||||||||||||||||    
T  30721981 catccataactcatttttttcactctataacaaaggaaaacaccagttcagattatgaaatccgaaaa 30722048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 223
Target Start/End: Complemental strand, 32025139 - 32024999
Alignment:
Q  89 tattacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgc------accatagaaaaaatggtgttcaggcgattttcgga 182  Q
    ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||| | |||      |||||  ||||||||||||| ||| | | ||| ||    
T  32025139 tattacaaacatgttcagaattggtgctggtgttgtccgaattacgtaatccgaactgcatcaggaccatgaaaaaaatggtgtttagggggtgttcaga 32025040  T
Q  183 ttatgtaatccgaaaacatcatgtaacgcgctctatttttt 223  Q
    || | ||||||||||| ||||| ||  |||| |||||||||    
T  32025039 ttctataatccgaaaaaatcatatagtgcgccctatttttt 32024999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 52777287 - 52777226
Alignment:
Q  182 attatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaat 243  Q
    ||||||||||||| ||||||||||||| | ||||||||||| ||||||| ||||||||||||    
T  52777287 attatgtaatccggaaacatcatgtaaagtgctctatttttgaagtttccggattacaaaat 52777226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 332
Target Start/End: Complemental strand, 52777205 - 52777146
Alignment:
Q  273 ctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    |||||||||||||||||| |||| |||||||||||||||||||| ||||| | |||||||    
T  52777205 ctataacaaaggaaaacaccattccagattatgaaatccgaaaacctcaagggcattttt 52777146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 99 - 262
Target Start/End: Original strand, 44085434 - 44085605
Alignment:
Q  99 atgtttagatttggtgctggtgttgtccggattacgtaatccggatt------gcaccat-agaaaaaatggtgttcaggcgattttcggattatgtaat 191  Q
    ||||||||| |||||||| |||||||| ||||||||||||| |||||      ||||||| | ||||||||||||| ||| | | |||||||||||||||    
T  44085434 atgtttagaattggtgcttgtgttgtctggattacgtaatctggattgcatcagcaccatgaaaaaaaatggtgtttagg-gctgttcggattatgtaat 44085532  T
Q  192 ccgaaaacatcatgtaacgcgctctatttttt--aagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    | ||| | || ||||||| | | |||||||||  |  ||| | ||||||| ||||||||||||||||| ||||    
T  44085533 ctgaagaaattatgtaacacaccctatttttttgagatttttagattacataattcggaaaaatccgtcactc 44085605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 45244744 - 45244691
Alignment:
Q  95 aaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca 148  Q
    ||||||||| ||| |||||| |||| ||||||||||||||||||||||||||||    
T  45244744 aaacatgttcagaattggtgatggtattgtccggattacgtaatccggattgca 45244691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 46622860 - 46622968
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctgg-attacaaaattcggaaaaat 253  Q
    |||||||||||| ||| | ||| | |||||||||||||| ||||||||||||||| |  ||||||||| ||||||| ||  ||| ||||| |||||||||    
T  46622860 aaaaatggtgtttagggggtttccagattatgtaatccggaaacatcatgtaacgtgtcctattttttgaagtttccggttttataaaatccggaaaaat 46622959  T
Q  254 ccgtaactc 262  Q
    |||| ||||    
T  46622960 ccgttactc 46622968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 34821512 - 34821579
Alignment:
Q  196 aaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    |||||||| ||||||||| ||||||||| ||||||| |||||||||||| ||||||| ||||| ||||    
T  34821512 aaacatcaggtaacgcgccctattttttgaagtttccggattacaaaatccggaaaattccgttactc 34821579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 331
Target Start/End: Complemental strand, 32024936 - 32024878
Alignment:
Q  273 ctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacatttt 331  Q
    |||||| |||||||||||||| |||  ||| | ||||||||||||||||||||||||||    
T  32024936 ctataataaaggaaaacatcagttcgaattttaaaatccgaaaatctcaaagacatttt 32024878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 43473044 - 43473097
Alignment:
Q  155 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaa 208  Q
    ||||||||||||| ||| | ||| |||||||||||||||| |||||||||||||    
T  43473044 aaaaaatggtgtttagggggtttccggattatgtaatccggaaacatcatgtaa 43473097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 8735331 - 8735278
Alignment:
Q  95 aaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca 148  Q
    ||||||||| ||| |||||||||||| |||||| ||| ||||||| ||||||||    
T  8735331 aaacatgttcagaattggtgctggtgctgtccgaatttcgtaatctggattgca 8735278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 8735542 - 8735493
Alignment:
Q  91 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatcc 140  Q
    ||||||||||||| | | |||||| || ||||||||||||||||||||||    
T  8735542 ttacaaacatgttcataattggtgttgatgttgtccggattacgtaatcc 8735493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 9087572 - 9087519
Alignment:
Q  95 aaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca 148  Q
    ||||||||| ||| |||||||||||| |||||| ||| ||||||| ||||||||    
T  9087572 aaacatgttcagaattggtgctggtgctgtccgaatttcgtaatctggattgca 9087519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 9087783 - 9087734
Alignment:
Q  91 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatcc 140  Q
    ||||||||||||| | | |||||| || ||||||||||||||||||||||    
T  9087783 ttacaaacatgttcataattggtgttgatgttgtccggattacgtaatcc 9087734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 47123135 - 47123082
Alignment:
Q  210 gcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||| |||| ||||    
T  47123135 gcgccctattttttgaagtttccggattacaaaattcggaaaaacccgttactc 47123082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 47130501 - 47130448
Alignment:
Q  210 gcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||| |||| ||||    
T  47130501 gcgccctattttttgaagtttccggattacaaaattcggaaaaacccgttactc 47130448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 155 - 262
Target Start/End: Original strand, 31519967 - 31520075
Alignment:
Q  155 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 253  Q
    |||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||     
T  31519967 aaaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgctctattttttgaagtttctggattacaaaatccggaaaaag 31520066  T
Q  254 ccgtaactc 262  Q
    |||||||||    
T  31520067 ccgtaactc 31520075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 91 - 262
Target Start/End: Original strand, 7971002 - 7971180
Alignment:
Q  91 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca------ccatagaaaaaatggtgttcaggcgattttcggatt 184  Q
    ||||||||||||| ||| ||| |||||||| |||||||||||||||||||||||||||      |||| ||||||| |||||| | | | | || |||||    
T  7971002 ttacaaacatgttcagaattgatgctggtgctgtccggattacgtaatccggattgcatcagcaccatggaaaaaagggtgtttatggggtgtttggatt 7971101  T
Q  185 atgtaatcc-gaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    ||||||||| |||||||||| ||| ||||  |||||||| |||||||  ||||||||||| ||||||||||||||||||    
T  7971102 atgtaatccagaaaacatcacgtagcgcgtcctatttttgaagtttccagattacaaaatccggaaaaatccgtaactc 7971180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 91 - 311
Target Start/End: Complemental strand, 41530824 - 41530595
Alignment:
Q  91 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca------ccatagaaaaaatggtgttcaggcgattttcggatt 184  Q
    ||||||||||||| | | |||||| ||||| |||||||||||||||||||||||||||      ||||  |||||| ||| || ||| | | ||| ||||    
T  41530824 ttacaaacatgttcaaaattggtgatggtgatgtccggattacgtaatccggattgcaacagcaccatgaaaaaaagggtttttagggggtgttcagatt 41530725  T
Q  185 atgtaatccgaaaaca-tcatgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactc-nnnnnnnactctataacaa 281  Q
    |||||||| ||||| | ||||||||||||| ||||||||| || |||| |||||||||||||||||||||||||||||||        || || ||||||    
T  41530724 atgtaatctgaaaaaaatcatgtaacgcgccctattttttgagatttccggattacaaaattcggaaaaatccgtaactcatttttccaccctttaacaa 41530625  T
Q  282 aggaaaacatcatttcagattatgaaatcc 311  Q
    |||||||||||||| | |||||| ||||||    
T  41530624 aggaaaacatcattccggattataaaatcc 41530595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 155 - 332
Target Start/End: Complemental strand, 21004473 - 21004295
Alignment:
Q  155 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaa-gtttctggattacaaaattcggaaaaat 253  Q
    ||||||||||||| |||   |||||||||||||||||||| |||||| |||||||||||  |||||||||| ||||| |||||||||||| |||||||||    
T  21004473 aaaaaatggtgtttagggagttttcggattatgtaatccggaaacat-atgtaacgcgccttattttttaaagtttccggattacaaaatccggaaaaat 21004375  T
Q  254 ccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    |||||||| |       || |||||||||||||||||| |||| | |||||||||||| | ||| ||||| | |||||||    
T  21004374 ccgtaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatctggaaacctcaagggcattttt 21004295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 156 - 262
Target Start/End: Complemental strand, 3094764 - 3094657
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    |||||||||||| ||| | ||| |||||||||||||||| ||||||||||||| |||| ||||||||| ||||||| |||||||||||| |||||||| |    
T  3094764 aaaaatggtgtttagggggtttccggattatgtaatccggaaacatcatgtaatgcgccctattttttgaagtttccggattacaaaatccggaaaaacc 3094665  T
Q  255 cgtaactc 262  Q
    ||||||||    
T  3094664 cgtaactc 3094657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 27928017 - 27928124
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    |||||||||||| ||| | ||| | |||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| ||||||||||    
T  27928017 aaaaatggtgtttagggggtttcctgattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaatc 27928116  T
Q  255 cgtaactc 262  Q
    ||| ||||    
T  27928117 cgttactc 27928124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 156 - 262
Target Start/End: Complemental strand, 44106306 - 44106199
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||  |||||||||    
T  44106306 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatctggaaaaatc 44106207  T
Q  255 cgtaactc 262  Q
    ||| ||||    
T  44106206 cgttactc 44106199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 162 - 262
Target Start/End: Original strand, 8885535 - 8885636
Alignment:
Q  162 ggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaac 260  Q
    |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| |||||||| |||| ||    
T  8885535 ggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgttac 8885634  T
Q  261 tc 262  Q
    ||    
T  8885635 tc 8885636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 262
Target Start/End: Complemental strand, 37248641 - 37248534
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaatc 254  Q
    |||||||||||| ||| | |||  ||||||||||||||| ||||||||| |||||||| ||| ||||||||||||  |||||||||||| | |||||| |    
T  37248641 aaaaatggtgtttagggggtttctggattatgtaatccggaaacatcatctaacgcgccctatttttttaagttttcggattacaaaatccagaaaaacc 37248542  T
Q  255 cgtaactc 262  Q
    ||||||||    
T  37248541 cgtaactc 37248534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 24627723 - 24627666
Alignment:
Q  91 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca 148  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||    
T  24627723 ttacaaacatattcagaattggtgctggtgttgtccggattacgtaatccggattgca 24627666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 16705068 - 16705120
Alignment:
Q  38 cacaaagagaactagtaacaatacatgaaggcaaatgtgatatgaaactattat 91  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  16705068 cacaaagagaactagtaacaa-acatgaaggcaaatgtgatatgaaactgttat 16705120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 34853382 - 34853309
Alignment:
Q  186 tgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgta 258  Q
    ||||||||| |||||||||||||||||| ||||||||| ||||||  |||||||||||| |||||||| |||||    
T  34853382 tgtaatccggaaacatcatgtaacgcgccctattttttaaagttttcggattacaaaatccggaaaaacccgta 34853309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 262
Target Start/End: Original strand, 36404222 - 36404337
Alignment:
Q  146 gcaccatagaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttct-ggattacaaaatt 244  Q
    |||||||  |||||| |||||| ||| | |||||||||||| ||||||||||| |||||||||| ||| ||||||||| || || | ||||||||||||     
T  36404222 gcaccatgaaaaaaagggtgtttaggag-ttttcggattatataatccgaaaa-atcatgtaacacgccctattttttgagattttcggattacaaaatc 36404319  T
Q  245 cggaaaaatccgtaactc 262  Q
    ||||| ||||||||||||    
T  36404320 cggaataatccgtaactc 36404337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 162 - 257
Target Start/End: Complemental strand, 28916860 - 28916764
Alignment:
Q  162 ggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgt 257  Q
    |||||| ||| | ||| ||| |||||||||||  ||||||||| |||||||| ||||||||| ||||||| |||||||||||| |||||||| ||||    
T  28916860 ggtgtttagggggtttccggtttatgtaatccagaaacatcatttaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgt 28916764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 35676635 - 35676715
Alignment:
Q  177 ttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccg 256  Q
    |||||||||||||||||| ||| ||||| || ||||| |||||||||  |||||| |||||||||||| ||||||||||||    
T  35676635 ttcggattatgtaatccggaaaaatcatatagcgcgccctattttttgtagtttccggattacaaaatccggaaaaatccg 35676715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 42280967 - 42281077
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatc---atgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaa 251  Q
    ||||| |||||| ||| | ||| |||||||||||||| | |||||||   ||||||||||||||||||||| ||||||  ||||||| |||| |||||||    
T  42280967 aaaaagggtgtttagggggtttccggattatgtaatctggaaacatcatgatgtaacgcgctctattttttgaagttttcggattacgaaatccggaaaa 42281066  T
Q  252 atccgtaactc 262  Q
    |||||| ||||    
T  42281067 atccgttactc 42281077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 40994869 - 40994808
Alignment:
Q  162 ggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt 223  Q
    |||||| ||| | ||||| |||||||||||||| |||||||||||||||||| |||||||||    
T  40994869 ggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatttttt 40994808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 223
Target Start/End: Original strand, 31234739 - 31234876
Alignment:
Q  91 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgcacca-ta----gaaaaaatggtgttcaggcgattttcggatta 185  Q
    |||| |||||||| ||| |||||||| ||| |||||||||||||||||||| | |||| || ||    |||||||||||||| ||| | | ||||||||     
T  31234739 ttacgaacatgttcagaattggtgctagtgctgtccggattacgtaatccgaactgcatcagtaccatgaaaaaatggtgtttaggggttgttcggattc 31234838  T
Q  186 tgtaatccgaaaacatcatgtaacgcgctctatttttt 223  Q
    | ||||||||||| || || || ||||| |||||||||    
T  31234839 tataatccgaaaaaattatatagcgcgccctatttttt 31234876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 180 - 262
Target Start/End: Complemental strand, 16310658 - 16310575
Alignment:
Q  180 ggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    ||||| ||||||||| ||| ||||| |||||| | ||||||||| ||||||| |||||||||||| |||||||| | |||||||    
T  16310658 ggattgtgtaatccggaaaaatcatctaacgcaccctattttttgaagtttccggattacaaaatccggaaaaacctgtaactc 16310575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 31234528 - 31234578
Alignment:
Q  91 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccg 141  Q
    ||||||| ||||| ||| |||||||||||||||| ||||||||||||||||    
T  31234528 ttacaaatatgttcagaattggtgctggtgttgttcggattacgtaatccg 31234578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 11698385 - 11698450
Alignment:
Q  179 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaat 243  Q
    |||||||||||||||| |||||||||||||| ||   |||||||| ||||||| ||||||||||||    
T  11698385 cggattatgtaatccggaaacatcatgtaacacgtcttattttttgaagtttccggattacaaaat 11698450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 315
Target Start/End: Complemental strand, 41328531 - 41328502
Alignment:
Q  286 aaacatcatttcagattatgaaatccgaaa 315  Q
    ||||||||||||||||||||||||||||||    
T  41328531 aaacatcatttcagattatgaaatccgaaa 41328502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 9573 - 9680
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||||||| | |||||||||||||||||||| |||||||||||||||||  ||||||||| ||||||| ||||||||||||||||||||| |    
T  9573 aaaaagggtgttcagggggttttcggattatgtaatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaattcggaaaaacc 9672  T
Q  255 cgtaactc 262  Q
    ||||||||    
T  9673 cgtaactc 9680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 155 - 332
Target Start/End: Complemental strand, 23523998 - 23523819
Alignment:
Q  155 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 253  Q
    |||||| |||||| ||| | |||  ||||||||||||||| |||||||||||||||||  ||||||||| ||||||| |||||||||||| || ||||||    
T  23523998 aaaaaagggtgtttagggggtttctggattatgtaatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaatccgaaaaaat 23523899  T
Q  254 ccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    |||||||| |       || || |||||||||||||||||||| |  |||||||||||| |||||||||| | |||||||    
T  23523898 ccgtaactccatttttcaccctctaacaaaggaaaacatcattccgaattatgaaatcctaaaatctcaagggcattttt 23523819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 155 - 312
Target Start/End: Complemental strand, 49397100 - 49396941
Alignment:
Q  155 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 253  Q
    |||||||| |||| | | ||||||||||||||||||||| |||||||| ||||||||   ||||||||| ||||||| |||||||||||| |||||||||    
T  49397100 aaaaaatgatgtttaagggattttcggattatgtaatccaaaaacatcttgtaacgcatcctattttttgaagtttccggattacaaaatccggaaaaat 49397001  T
Q  254 ccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 312  Q
    |||||||| |       || |||||| |||||||||||||||| | ||||||||||||||    
T  49397000 ccgtaactccatttttcaccctataataaaggaaaacatcattccggattatgaaatccg 49396941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 29822687 - 29822603
Alignment:
Q  179 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 262  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| |||||||| |||||||||    
T  29822687 cggattatgtaatccgaaaacatcatgtaacgcgctgtattttttgaagtttccggattacaaaatccggaaaaacccgtaactc 29822603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 179 - 322
Target Start/End: Complemental strand, 32441879 - 32441734
Alignment:
Q  179 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctat 276  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| | ||||||||| ||||| |       || ||||    
T  32441879 cggattatgtaatccggaaacatcatgtaacgcgcgctattttttgaagtttccggattacaaaatccagaaaaatccttaactccatttttcaccctat 32441780  T
Q  277 aacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaa 322  Q
    |||||||||||||| |||| | |||||||||||||| ||| |||||    
T  32441779 aacaaaggaaaacaccattccggattatgaaatccggaaacctcaa 32441734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 156 - 317
Target Start/End: Complemental strand, 38536261 - 38536098
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | ||| |||||||||||||| | |||||||||||||| ||| ||||||||| ||||||| | |||||||||| |||||||| |    
T  38536261 aaaaaaggtgtttagggggtttccggattatgtaatctggaaacatcatgtaacacgccctattttttgaagtttccgaattacaaaatccggaaaaacc 38536162  T
Q  255 cgtaac-tcnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaat 317  Q
    |||||| ||       || |||||||||||||||||| |||||| |||||||||||||| ||||    
T  38536161 cgtaacttcatttttcaccctataacaaaggaaaacaccatttcggattatgaaatccggaaat 38536098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 177 - 331
Target Start/End: Complemental strand, 38416635 - 38416479
Alignment:
Q  177 ttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaatccgtaactc-nnnnnnnactct 274  Q
    |||||||||||||||||||||| ||||||||||| || ||| ||||||| ||||| ||||||||||||| | ||||||||| |||||        || ||    
T  38416635 ttcggattatgtaatccgaaaaaatcatgtaacgtgccctatttttttatgtttccggattacaaaatttgaaaaaatccgcaactcattttttcaccct 38416536  T
Q  275 ataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacatttt 331  Q
    |||||||||||||||| |  ||||||||||||||| ||||||  |||| ||||||||    
T  38416535 ataacaaaggaaaacacctattcagattatgaaattcgaaaacttcaaggacatttt 38416479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 188 - 332
Target Start/End: Original strand, 6228919 - 6229065
Alignment:
Q  188 taatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctataacaaagga 285  Q
    ||||||| |||||||||||||||||| ||||||||| ||||||| || ||||||||| |||||||||||||| || |       || |||||||||||||    
T  6228919 taatccggaaacatcatgtaacgcgccctattttttgaagtttccgggttacaaaatccggaaaaatccgtagctccatttttcaccctataacaaagga 6229018  T
Q  286 aaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    ||||| |||| | |||||||||||||  ||| ||||| |||||||||    
T  6229019 aaacaccattccggattatgaaatcctgaaacctcaaggacattttt 6229065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 17933238 - 17933315
Alignment:
Q  181 gattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgt 257  Q
    |||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||  ||||||||||||    
T  17933238 gattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttctggattacaaaatctggaaaaatccgt 17933315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 34972956 - 34972867
Alignment:
Q  155 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaat 243  Q
    ||||||||||||| ||| | ||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||  |||||||||||    
T  34972956 aaaaaatggtgtttagggggttttcggattatgtagtccgaaaacatcatgtaacgcgccctatttttttaagtttccagattacaaaat 34972867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 154 - 262
Target Start/End: Original strand, 48319139 - 48319247
Alignment:
Q  154 gaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaa 252  Q
    ||||||| |||||| ||| | |||||||||||||||||||  |||||||||||||||||| ||||||||| ||||||| ||||||| |||| ||||||||    
T  48319139 gaaaaaaaggtgtttagggggttttcggattatgtaatccagaaacatcatgtaacgcgccctattttttgaagtttccggattac-aaatccggaaaaa 48319237  T
Q  253 tccgtaactc 262  Q
    ||||| ||||    
T  48319238 tccgtcactc 48319247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 157 - 332
Target Start/End: Original strand, 6003748 - 6003927
Alignment:
Q  157 aaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta---ttttttaagtttctggattacaaaattcggaaaaat 253  Q
    |||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||| ||||    ||||||||||||| |||||| |||||||| ||||||    
T  6003748 aaaaaggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcactcttattttttttaagtttccggattataaaattcgaaaaaat 6003847  T
Q  254 ccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    |||||||| |       || ||||||||||||||| || |||| | |||||||||||||  ||| ||||| || ||||||    
T  6003848 ccgtaactccatttttcaccctataacaaaggaaaccaccattccggattatgaaatccagaaacctcaaggatattttt 6003927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 156 - 257
Target Start/End: Original strand, 46440350 - 46440452
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||  ||| ||||||||||||| |||||| |||||||||||||| |    
T  46440350 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgtcctatttttttaagtttccggattataaaattcggaaaaacc 46440449  T
Q  255 cgt 257  Q
    |||    
T  46440450 cgt 46440452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 156 - 312
Target Start/End: Original strand, 3703326 - 3703484
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    |||||||||||| ||| | | |||| ||||||||||||||||| |||||||||| ||  ||||||||| ||||||  |||||||||||| || |||||||    
T  3703326 aaaaatggtgtttagggggtgttcgaattatgtaatccgaaaaaatcatgtaacacgtcctattttttgaagttttcggattacaaaatccgaaaaaatc 3703425  T
Q  255 cgtaactc-nnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 312  Q
    ||||||||        || ||||||||||||||||||  | ||| ||||||||||||||    
T  3703426 cgtaactcattttttcaccctataacaaaggaaaacactagttcggattatgaaatccg 3703484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 156 - 312
Target Start/End: Original strand, 25539024 - 25539182
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    |||||| ||||| ||| | ||| |||||||||||||||  ||||||||||||||  || ||||||||| ||||||| |||||||||||| |||||||| |    
T  25539024 aaaaatagtgtttagggggtttccggattatgtaatccagaaacatcatgtaacatgccctattttttgaagtttccggattacaaaatccggaaaaacc 25539123  T
Q  255 cgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 312  Q
    ||||||| |       ||  ||||||||||||||||| |||| | ||||||||||||||    
T  25539124 cgtaactccatttttcaccatataacaaaggaaaacaccattccggattatgaaatccg 25539182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 262
Target Start/End: Complemental strand, 19835611 - 19835504
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttt-taagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||| | ||||||||  ||||||| |||||||||||| |||||||| |    
T  19835611 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcaccctatttttcaaagtttccggattacaaaatccggaaaaacc 19835512  T
Q  255 cgtaactc 262  Q
    ||| ||||    
T  19835511 cgttactc 19835504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 162 - 262
Target Start/End: Complemental strand, 7931743 - 7931642
Alignment:
Q  162 ggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaac 260  Q
    |||||| ||| | ||| |||||||||||||||| |||||| ||||||||||| ||||||||| ||||||| ||||| |||||| |||||||| |||| ||    
T  7931743 ggtgtttagggggtttccggattatgtaatccggaaacataatgtaacgcgccctattttttgaagtttccggattgcaaaatccggaaaaacccgttac 7931644  T
Q  261 tc 262  Q
    ||    
T  7931643 tc 7931642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 25491471 - 25491568
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaa 252  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||  ||||||||| ||||||| |||||||||||| || |||||    
T  25491471 aaaaaaggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaatccgaaaaaa 25491568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 25752539 - 25752620
Alignment:
Q  175 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatcc 255  Q
    |||||||||||||||||| | ||||||||||||| |||| ||||||||| || |||| |||||||||||| |||||||||||    
T  25752539 ttttcggattatgtaatctggaaacatcatgtaatgcgccctattttttgaaatttccggattacaaaatccggaaaaatcc 25752620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 154 - 262
Target Start/End: Original strand, 54631537 - 54631646
Alignment:
Q  154 gaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaa 252  Q
    |||||||  ||||| ||| | ||| |||||||||||||||| ||||||||||||||||||  || ||||| ||||||| |||||||||||| ||||||||    
T  54631537 gaaaaaaatgtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccatactttttgaagtttccggattacaaaatccggaaaaa 54631636  T
Q  253 tccgtaactc 262  Q
     |||| ||||    
T  54631637 cccgttactc 54631646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 2506107 - 2506215
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctc-tatttttt-aagtttctggattacaaaattcggaaaaat 253  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| | |||||||| | ||||||| || |||||||| ||||||||    
T  2506107 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgcccttattttttgatgtttctgaatcacaaaatttggaaaaat 2506206  T
Q  254 ccgtaactc 262  Q
    |||| ||||    
T  2506207 ccgttactc 2506215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 156 - 262
Target Start/End: Complemental strand, 40703755 - 40703648
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | ||||| | |||||||||||| ||||||||||||| || | ||||||||| || |||| |||||||||||| ||||||||||    
T  40703755 aaaaagggtgtttagggggttttcaggttatgtaatccggaaacatcatgtaatgcaccctattttttgaaatttccggattacaaaatccggaaaaatc 40703656  T
Q  255 cgtaactc 262  Q
    ||| ||||    
T  40703655 cgttactc 40703648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 156 - 251
Target Start/End: Complemental strand, 8106483 - 8106387
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaa 251  Q
    |||||||||||| ||| | | ||||||||||||||| || ||| |||||||| ||||| ||||||||| ||||||  |||||||||||| |||||||    
T  8106483 aaaaatggtgtttagggggtgttcggattatgtaatacggaaaaatcatgtagcgcgccctattttttgaagttttcggattacaaaatccggaaaa 8106387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 41413270 - 41413329
Alignment:
Q  273 ctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    ||||||||||| ||||||  ||| | |||||||||||||||||||||||| |||||||||    
T  41413270 ctataacaaagaaaaacactattccggattatgaaatccgaaaatctcaaggacattttt 41413329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 50392529 - 50392592
Alignment:
Q  200 atcatgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactc 262  Q
    |||||||||||||| | ||||||| || |||| |||||||||||| ||||||||||||||||||    
T  50392529 atcatgtaacgcgccccattttttgagatttccggattacaaaatccggaaaaatccgtaactc 50392592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 332
Target Start/End: Complemental strand, 34972846 - 34972787
Alignment:
Q  273 ctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 332  Q
    |||||||||||||||||| |||| | |||||||||||||| ||| ||||| | |||||||    
T  34972846 ctataacaaaggaaaacaccattccggattatgaaatccggaaacctcaagggcattttt 34972787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 25140725 - 25140775
Alignment:
Q  91 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccg 141  Q
    ||||||||||||| ||| ||||||||| || ||| ||||||||||||||||    
T  25140725 ttacaaacatgttcagaattggtgctgatgctgttcggattacgtaatccg 25140775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 31582498 - 31582560
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctat 218  Q
    ||||| |||||| ||| | ||| |||||||||||||| ||||||||||||||| |||| ||||    
T  31582498 aaaaagggtgtttagggggtttccggattatgtaatcagaaaacatcatgtaatgcgccctat 31582560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 53894108 - 53894169
Alignment:
Q  197 aacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgt 257  Q
    ||||||||||||||||| ||||||||| |||||||  |||| |||||| |||||||| ||||    
T  53894108 aacatcatgtaacgcgccctattttttgaagtttcctgattgcaaaatccggaaaaacccgt 53894169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 41413199 - 41413231
Alignment:
Q  179 cggattatgtaatccgaaaacatcatgtaacgc 211  Q
    |||||||||||||||| ||||||||||||||||    
T  41413199 cggattatgtaatccggaaacatcatgtaacgc 41413231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 42660383 - 42660435
Alignment:
Q  89 tattacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccg 141  Q
    ||||||||||||| | ||| |||||||||||| | |||||||||| |||||||    
T  42660383 tattacaaacatgctcagaattggtgctggtgctatccggattacataatccg 42660435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 142039 - 142138
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||  |||||||||    
T  142039 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatctggaaaaatc 142138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 3494 - 3568
Alignment:
Q  179 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaa 252  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| |||||||| |||||||||||||| |||||    
T  3494 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttctagattacaaaattcgaaaaaa 3568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 262
Target Start/End: Complemental strand, 23205 - 23098
Alignment:
Q  156 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 254  Q
    ||||| |||||| ||| | ||| |||||||| ||||||| ||||||||||||| || | ||||||||| ||||||| |||||| ||||||||||||||||    
T  23205 aaaaaaggtgtttagggggtttccggattatataatccggaaacatcatgtaatgcaccctattttttgaagtttccggattataaaattcggaaaaatc 23106  T
Q  255 cgtaactc 262  Q
    ||| ||||    
T  23105 cgttactc 23098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 205816 - 205873
Alignment:
Q  91 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca 148  Q
    ||||||||||||| ||| |||||||||||| |||| ||||||||||||||||||||||    
T  205816 ttacaaacatgttcagaattggtgctggtgatgtctggattacgtaatccggattgca 205873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 602 times since January 2019
Visitors: 6705