View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0880_high_6 (Length: 284)
Name: NF0880_high_6
Description: NF0880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0880_high_6 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold1395 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 46 - 284
Target Start/End: Original strand, 43338612 - 43338850
Alignment:
| Q |
46 |
atcatcacatttgaattgttcaactctgccaatgcatctagctctttcccaaatttatcaagactactcactggaaataccttgtcacaccagttcagct |
145 |
Q |
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| T |
43338612 |
atcatcacatttgaattgttcaactttgccaatgcatctagctctttcccaaatttatcaagactactcactggaaataccttgtcacaccagttcagct |
43338711 |
T |
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| Q |
146 |
tcttggcaaagtagattgaaccagatggcataacagccttatagtaagttgaaaacttggttttcagagtgacgtttgacgtttcggcaacagcttccgt |
245 |
Q |
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| T |
43338712 |
tcttggcgaagtagattgaaccagatggcatgacagccttatagtaagttgaaaacttggttttcagagtaacgtttgacgtttcggcaacagcttccat |
43338811 |
T |
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| Q |
246 |
ggccttcgacaaatcaatgtttgatctgtggattccatt |
284 |
Q |
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| T |
43338812 |
ggccttagacaaatcaatgtttgatctgtggattccatt |
43338850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 46 - 284
Target Start/End: Original strand, 43334177 - 43334415
Alignment:
| Q |
46 |
atcatcacatttgaattgttcaactctgccaatgcatctagctctttcccaaatttatcaagactactcactggaaataccttgtcacaccagttcagct |
145 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43334177 |
atcatcacatttgaattgtccaactttgccaatgcatctagctctttcccaaatttatcaagactactcactggaaataccttgtcacaccagttcagct |
43334276 |
T |
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| Q |
146 |
tcttggcaaagtagattgaaccagatggcataacagccttatagtaagttgaaaacttggttttcagagtgacgtttgacgtttcggcaacagcttccgt |
245 |
Q |
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| T |
43334277 |
tcttggcgaagtagattgaaccagatggcatgacagccttatagtaagttgaaaacttggttttcagagtaacgtttgacgtttcggcaacagcttccat |
43334376 |
T |
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| Q |
246 |
ggccttcgacaaatcaatgtttgatctgtggattccatt |
284 |
Q |
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| T |
43334377 |
ggccttagacaaatcaatgtttgatctgtggattccatt |
43334415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1395 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold1395
Description:
Target: scaffold1395; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 66 - 284
Target Start/End: Original strand, 1 - 219
Alignment:
| Q |
66 |
caactctgccaatgcatctagctctttcccaaatttatcaagactactcactggaaataccttgtcacaccagttcagcttcttggcaaagtagattgaa |
165 |
Q |
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| T |
1 |
caactttgccaatgcatctagctctttcccaaatttatcaagactactcactggaaataccttgtcacaccagttcagcttcttggcgaagtagattgaa |
100 |
T |
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| Q |
166 |
ccagatggcataacagccttatagtaagttgaaaacttggttttcagagtgacgtttgacgtttcggcaacagcttccgtggccttcgacaaatcaatgt |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| ||||||| ||||| || |||| || |||||||||| |
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| T |
101 |
ccagatggcataacagccttatagtaagttgaaaacttgattttaagagtaacgtttgacgtttaggcaacaacttccatgaccttagaaaaatcaatgt |
200 |
T |
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| Q |
266 |
ttgatctgtggattccatt |
284 |
Q |
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||||||||||||||||||| |
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| T |
201 |
ttgatctgtggattccatt |
219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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