View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0880_high_9 (Length: 251)
Name: NF0880_high_9
Description: NF0880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0880_high_9 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0095 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 23 - 251
Target Start/End: Original strand, 39461359 - 39461587
Alignment:
| Q |
23 |
atcatcaatttggcttttctttcactcgtaacttccgaacaaagcccatgtttctaatgtgttacaactctttgaaacttgtgaatatatgtttgaaggt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39461359 |
atcatcaatttggcttttctttcactcgtaacttccgaacaaagcctatgtttctaatgtgttacaactctttgaaacttgtgaatatatgtttgaaggt |
39461458 |
T |
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| Q |
123 |
gaatttgatatttgtttgatttatgatgttggttgcggaagagagtgaatttctgtgttactctaaataggtgctcctaagcagaaatggacatcagaag |
222 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39461459 |
gaatttgatatttgtttgatttatgatgttggttgcagaagagagtgaatttctgtgttactctaaataggtgctcctaagcagaaatggacatcagaag |
39461558 |
T |
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| Q |
223 |
aggaagcggcacttaaagctggagctctc |
251 |
Q |
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| T |
39461559 |
aggaagcggcacttaaagctggagctctc |
39461587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 97 - 246
Target Start/End: Original strand, 38813072 - 38813221
Alignment:
| Q |
97 |
aaacttgtgaatatatgtttgaaggtgaatttgatatttgtttgatttatgatgttggttgcggaagagagtgaatttctgtgttactctaaataggtgc |
196 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||| ||||||| || ||| ||||| || ||||| |
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| T |
38813072 |
aaacttgtgattatatgtttggaggtgaatttgatatttgtataatttatgatgttggttgcagaagagattgaatttttgggttgctctagatgggtgc |
38813171 |
T |
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| Q |
197 |
tcctaagcagaaatggacatcagaagaggaagcggcacttaaagctggag |
246 |
Q |
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| T |
38813172 |
tactcggcagaaatggtcatcggaagaggaagtggcactcaaagctggag |
38813221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 91 - 246
Target Start/End: Original strand, 39453907 - 39454062
Alignment:
| Q |
91 |
tctttgaaacttgtgaatatatgtttgaaggtgaatttgatatttgtttgatttatgatgttggttgcggaagagagtgaatttctgtgttactctaaat |
190 |
Q |
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|||||||||| ||||| |||| |||| || |||||||||||||||| | ||||| || | || || | ||| ||||||||||||| | |||||||| || |
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| T |
39453907 |
tctttgaaacatgtgattataattttggagttgaatttgatatttgtataatttacgaggatgatttcagaacagagtgaatttctttattactctagat |
39454006 |
T |
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| Q |
191 |
aggtgctcctaagcagaaatggacatcagaagaggaagcggcacttaaagctggag |
246 |
Q |
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| T |
39454007 |
gggtgctcctaagcagaaatggacatcagaagaggaagcagctcttaaagctggag |
39454062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 36 - 246
Target Start/End: Complemental strand, 39409870 - 39409658
Alignment:
| Q |
36 |
cttttctttcactcgtaacttccgaacaaagcccat--gtttctaatgtgttacaactctttgaaacttgtgaatatatgtttgaaggtgaatttgatat |
133 |
Q |
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||||| |||||||| |||||| |||||||||| || |||||| |||| ||| | ||| | |||||||||| |||||||||| || |||||||||||| |
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| T |
39409870 |
cttttatttcactccaaacttcggaacaaagcctattagtttctcatgtcttatgaatctctaaaacttgtgattatatgtttggagatgaatttgatat |
39409771 |
T |
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| Q |
134 |
ttgtttgatttatgatgttggttgcggaagagagtgaatttctgtgttactctaaataggtgctcctaagcagaaatggacatcagaagaggaagcggca |
233 |
Q |
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|||| | |||||||||||||||||| | || ||||||||| |||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39409770 |
ttgtataatttatgatgttggttgcagccgaaagtgaatttttgtgttactctagatgggtgctcctaagcagaattggacatcagaagaggaagcggcg |
39409671 |
T |
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| Q |
234 |
cttaaagctggag |
246 |
Q |
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| T |
39409670 |
agtaaagctggag |
39409658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 91 - 246
Target Start/End: Complemental strand, 15833 - 15678
Alignment:
| Q |
91 |
tctttgaaacttgtgaatatatgtttgaaggtgaatttgatatttgtttgatttatgatgttggttgcggaagagagtgaatttctgtgttactctaaat |
190 |
Q |
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|||||||||| ||||| |||| |||| || |||||||||||||||| | ||||| || | || || | ||| ||||||||||||| | |||||||| || |
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| T |
15833 |
tctttgaaacatgtgattataattttggagttgaatttgatatttgtataatttacgaggatgatttcagaacagagtgaatttctttattactctagat |
15734 |
T |
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| Q |
191 |
aggtgctcctaagcagaaatggacatcagaagaggaagcggcacttaaagctggag |
246 |
Q |
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| T |
15733 |
gggtgctcctaagcagaaatggacatcagaagaggaagcagctcttaaagctggag |
15678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 246
Target Start/End: Original strand, 12079176 - 12079281
Alignment:
| Q |
141 |
atttatgatgttggttgcggaagagagtgaatttctgtgttactctaaataggtgctcctaagcagaaatggacatcagaagaggaagcggcacttaaag |
240 |
Q |
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|||||||||||||||||| | |||| ||| ||| |||||| ||| |||| |||| ||||||||| |||||| || |||||||||| | |||||||||| |
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| T |
12079176 |
atttatgatgttggttgcagcagagtttgattttttgtgttgctcgaaatgggtgttcctaagcaaaaatggtcagaagaagaggaatccgcacttaaag |
12079275 |
T |
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| Q |
241 |
ctggag |
246 |
Q |
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|||||| |
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| T |
12079276 |
ctggag |
12079281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 12086230 - 12086312
Alignment:
| Q |
164 |
agagtgaatttctgtgttactctaaataggtgctcctaagcagaaatggacatcagaagaggaagcggcacttaaagctggag |
246 |
Q |
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||||||||||| |||||| ||||| || ||||||| |||||||||||| ||| ||||||||||||| ||||||||||||| |
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| T |
12086230 |
agagtgaatttttgtgttgctctagatgggtgctcttaagcagaaatgtccatttgaagaggaagcgggtcttaaagctggag |
12086312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 22844379 - 22844433
Alignment:
| Q |
192 |
ggtgctcctaagcagaaatggacatcagaagaggaagcggcacttaaagctggag |
246 |
Q |
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|||||| ||| |||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
22844379 |
ggtgcttctaggcagaaatggtcatcagaagaggaagcggcactcaaagctggag |
22844433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 40020174 - 40020120
Alignment:
| Q |
192 |
ggtgctcctaagcagaaatggacatcagaagaggaagcggcacttaaagctggag |
246 |
Q |
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||||||||||||||||||||||| ||||||| ||||| ||||| |||||||||| |
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| T |
40020174 |
ggtgctcctaagcagaaatggactgcagaagaagaagcagcactgaaagctggag |
40020120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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