View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0880_low_10 (Length: 337)
Name: NF0880_low_10
Description: NF0880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0880_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 176 - 322
Target Start/End: Original strand, 32066811 - 32066957
Alignment:
| Q |
176 |
atatgtagattttaccgagaactctccgccctcctccggttttcaccccatgaatcttccaccaccctccctctaaacccatttatagtggcctaaaggc |
275 |
Q |
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| T |
32066811 |
atatgtagattttaccgagaactctcctccctcctccggttttcaccccacgaatcttccaccaccctccctctaaacccatttatagtggccaaaaggt |
32066910 |
T |
|
| Q |
276 |
tatcaatttgctccccctcccacacaaacggtaatcttctccaaaga |
322 |
Q |
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| T |
32066911 |
tttcaatttgctccccctcccacacaaacggtaatcttctccaaaga |
32066957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 37987303 - 37987348
Alignment:
| Q |
117 |
catcatcacccccaccacacaaaccaacaccacggtttaccagaca |
162 |
Q |
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||||||| ||||||||||||||||||||||||||||| | |||||| |
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| T |
37987303 |
catcatctcccccaccacacaaaccaacaccacggttcagcagaca |
37987348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 697999 - 697953
Alignment:
| Q |
116 |
acatcatcacccccaccacacaaaccaacaccacggtttaccagaca |
162 |
Q |
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| T |
697999 |
acatcatcacccccaccacactaaccaacaccacggtttagcagaca |
697953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 10243825 - 10243788
Alignment:
| Q |
116 |
acatcatcacccccaccacacaaaccaacaccacggtt |
153 |
Q |
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| T |
10243825 |
acatcatcacccccaccacacaaaccaacaccacggtt |
10243788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 46693262 - 46693294
Alignment:
| Q |
116 |
acatcatcacccccaccacacaaaccaacacca |
148 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
46693262 |
acatcatcacccccaccacacaaaccaacacca |
46693294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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