View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0880_low_12 (Length: 316)
Name: NF0880_low_12
Description: NF0880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0880_low_12 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 84 - 316
Target Start/End: Original strand, 24715752 - 24715984
Alignment:
| Q |
84 |
ggacatcatcatactagtaccctcacactaaggagaatcatacacattctcctcacttgtatatactacataccaaccaataaaccaattcaattaagtc |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24715752 |
ggacatcatcatactagtaccctcacactaaggagaatcatacacattctcctcacttgtatatactatataccaaccaataaaccaattcaattaagtc |
24715851 |
T |
|
| Q |
184 |
aaattattttccaatccaaaattgatgaagaattcaactcatgatgatcacctagtaaaacacactagaatttatttatataaaagttaatttcaacatc |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24715852 |
aaattattttccaatccaaaattgatgaagaattcaactcatgatgatcacctagtaaaacacactagaatttatttatataaaaattaatttcaacatc |
24715951 |
T |
|
| Q |
284 |
aaattatcgtaaaacatgattagttttaaacaa |
316 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
24715952 |
aaattatcataaaacatgattagttttaaacaa |
24715984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1387 times since January 2019
Visitors: 6712