View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0880_low_15 (Length: 303)
Name: NF0880_low_15
Description: NF0880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0880_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 2906105 - 2906392
Alignment:
| Q |
1 |
ttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctcaacaaaatcatcattatggtggtgttcttcctcgctgccgcca |
100 |
Q |
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| T |
2906105 |
ttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctcaacaaaatcatcattatggtggtgttcttcctcgctgccgcca |
2906204 |
T |
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| Q |
101 |
ccaaattcatctcccacctccacaactgtgccgaattgaacgcgacgctctccaccgccaccaccaataggggaatgagaaggggattttgtaccacgag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
2906205 |
ccaaattcatctcccacctccacaactgtgccgaattgaacacgacgctctccaccgccgccaccaacaggggaatgagaaggggattttgtaccacgag |
2906304 |
T |
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| Q |
201 |
ggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttggatgatgtccatc |
288 |
Q |
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| T |
2906305 |
ggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttgtatgatgttcatc |
2906392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 2854077 - 2854364
Alignment:
| Q |
1 |
ttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctcaacaaaatcatcattatggtggtgttcttcctcgctgccgcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854077 |
ttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctcaacaaaatcatcattatggtggtgttcttcctcgctgccgcca |
2854176 |
T |
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| Q |
101 |
ccaaattcatctcccacctccacaactgtgccgaattgaacgcgacgctctccaccgccaccaccaataggggaatgagaaggggattttgtaccacgag |
200 |
Q |
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| T |
2854177 |
ccaaattcatctcccatctccacaactgtgccaaattgaacccgacactcctcaccgccaccaccaacaggggaatgagaaggggattttgtaccacgag |
2854276 |
T |
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| Q |
201 |
ggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttggatgatgtccatc |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
2854277 |
ggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttgtatgatgttcatc |
2854364 |
T |
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