View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0880_low_18 (Length: 292)
Name: NF0880_low_18
Description: NF0880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0880_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 67 - 235
Target Start/End: Complemental strand, 44160188 - 44160012
Alignment:
| Q |
67 |
catcatcctcttccccatgcaccaccatctgcccccc-tcctccaccaccaacctcctccactacctaaagtttgaaaatcgctcccatcacccttatct |
165 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44160188 |
catcatcctcttccccatgcaccaccgtctgccccccctccaccaccaccaacctcctccactacctaaagtttgaaaatcgctcccatcacccttatct |
44160089 |
T |
|
| Q |
166 |
ggatttcttcatcaataaaacctccctta-------taacaagaattctggccaaatccagcctcctcctccctatg |
235 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44160088 |
ggatttcttcatcaataaaacctctcttaggagttctaacaagaattctggccaaatccagcctccgcctccctatg |
44160012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 476 times since January 2019
Visitors: 6717