View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0880_low_19 (Length: 292)

Name: NF0880_low_19
Description: NF0880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0880_low_19
NF0880_low_19
[»] chr3 (4 HSPs)
chr3 (67-265)||(48236192-48236390)
chr3 (3-59)||(48236418-48236474)
chr3 (111-169)||(25252041-25252099)
chr3 (110-170)||(43381176-43381236)
[»] chr6 (1 HSPs)
chr6 (94-170)||(2732920-2732996)
[»] chr7 (1 HSPs)
chr7 (106-170)||(1110409-1110473)
[»] scaffold0491 (1 HSPs)
scaffold0491 (107-151)||(4388-4432)
[»] chr8 (3 HSPs)
chr8 (107-151)||(18737689-18737733)
chr8 (109-171)||(42843363-42843425)
chr8 (107-151)||(18747547-18747591)
[»] chr5 (1 HSPs)
chr5 (87-167)||(43283418-43283498)
[»] chr4 (1 HSPs)
chr4 (96-171)||(415131-415206)
[»] chr1 (4 HSPs)
chr1 (110-171)||(6025970-6026031)
chr1 (138-171)||(33651683-33651716)
chr1 (110-171)||(44417797-44417858)
chr1 (138-170)||(15592684-15592716)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 67 - 265
Target Start/End: Complemental strand, 48236390 - 48236192
Alignment:
Q  67 aatataacggttatagtggtgctatggcactataacatagcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaa 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48236390 aatataacggttatagtggtgctatggcactataacatagcgaaatttgaacaaatcactgttatttcgggatatgctatttagtgtaaaatgttgtcaa 48236291  T
Q  167 atagtagcagcacgctataacattgttatgcagcggagtttgaacaaattgctattgacaacgtttgtttacctttttccacttcttaaactttgactg 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48236290 atagtagcagcacgctataacattgttatgcagcggagtttgaacaaattgctattgacaacgtttgtttacctttttccacttcttaaactttgactg 48236192  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 48236474 - 48236418
Alignment:
Q  3 atcaacattttttctttgtaccctaaatattaaccatttaataatgcaaattttccc 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48236474 atcaacattttttctttgtaccctaaatattaaccatttaataatgcaaattttccc 48236418  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 25252041 - 25252099
Alignment:
Q  111 atttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaata 169  Q
    |||||||||||||||| || ||||| |||| ||||||||||  ||||||||||| ||||    
T  25252041 atttgaacaaatcgctcttgtttcgtgatacgctatttagtacaaaatgttgtctaata 25252099  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 43381176 - 43381236
Alignment:
Q  110 aatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatag 170  Q
    |||||||| |||||||| ||||| || ||||||| ||||| |  |||||||||||||||||    
T  43381176 aatttgaataaatcgctattattccgcgatatgcaatttaatacaaaatgttgtcaaatag 43381236  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 2732920 - 2732996
Alignment:
Q  94 cactataacatagcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatag 170  Q
    ||||||| | ||| ||||||||||||||||||| || ||| | |||||||||||||||  |||||||||||||||||    
T  2732920 cactatagcgtagtgaaatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaatag 2732996  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 1110473 - 1110409
Alignment:
Q  106 gcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatag 170  Q
    ||||||||||||||||| ||| || |||||||||||||||||||||   || |||||||||||||    
T  1110473 gcgaaatttgaacaaattgctattgtttcgggatatgctatttagttctaagtgttgtcaaatag 1110409  T

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Target: scaffold0491 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 4388 - 4432
Alignment:
Q  107 cgaaatttgaacaaatcgctgttatttcgggatatgctatttagt 151  Q
    |||||||||||||||| ||| || |||||||||||||||||||||    
T  4388 cgaaatttgaacaaattgctattgtttcgggatatgctatttagt 4432  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 18737689 - 18737733
Alignment:
Q  107 cgaaatttgaacaaatcgctgttatttcgggatatgctatttagt 151  Q
    |||||||||||||||| ||| || |||||||||||||||||||||    
T  18737689 cgaaatttgaacaaattgctattgtttcgggatatgctatttagt 18737733  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 42843363 - 42843425
Alignment:
Q  109 aaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatagt 171  Q
    |||||||||||||| ||| || || ||||||| |||||| ||| |||| ||||||||||||||    
T  42843363 aaatttgaacaaattgctattgttccgggataagctattaagtataaattgttgtcaaatagt 42843425  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 18747547 - 18747591
Alignment:
Q  107 cgaaatttgaacaaatcgctgttatttcgggatatgctatttagt 151  Q
    |||||||||||||||| ||| |  |||||||||||||||||||||    
T  18747547 cgaaatttgaacaaattgctatagtttcgggatatgctatttagt 18747591  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 43283498 - 43283418
Alignment:
Q  87 gctatggcactataacatagcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaa 167  Q
    ||||| |||||||| ||||||| |||||||||||||||||||| || ||  ||| ||||||| |   ||||||||||||||    
T  43283498 gctatagcactatagcatagcgtaatttgaacaaatcgctgttgttccgcaatacgctatttgggacaaaatgttgtcaaa 43283418  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 415131 - 415206
Alignment:
Q  96 ctataacatagcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatagt 171  Q
    ||||| ||||||  ||||||||||| ||||| || ||||| ||| |||||||||||  |||||||||| |||||||    
T  415131 ctatagcatagcagaatttgaacaagtcgctattgtttcgtgatttgctatttagtacaaaatgttgtgaaatagt 415206  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 6026031 - 6025970
Alignment:
Q  110 aatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatagt 171  Q
    ||||||||||||| | | || || || |||||||||||||||  ||||||||||||||||||    
T  6026031 aatttgaacaaatagttattgttccgcgatatgctatttagtacaaaatgttgtcaaatagt 6025970  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 33651683 - 33651716
Alignment:
Q  138 atatgctatttagtgtaaaatgttgtcaaatagt 171  Q
    |||||||||||||| |||||||||||||||||||    
T  33651683 atatgctatttagtataaaatgttgtcaaatagt 33651716  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 44417797 - 44417858
Alignment:
Q  110 aatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatagt 171  Q
    |||||||||||| || | || ||| |||||||| ||||||||| ||| ||||||||||||||    
T  44417797 aatttgaacaaaccgttattgttttgggatatgttatttagtgcaaagtgttgtcaaatagt 44417858  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 15592716 - 15592684
Alignment:
Q  138 atatgctatttagtgtaaaatgttgtcaaatag 170  Q
    ||||||||||| |||||||||||||||||||||    
T  15592716 atatgctatttggtgtaaaatgttgtcaaatag 15592684  T

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