View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0880_low_23 (Length: 284)

Name: NF0880_low_23
Description: NF0880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0880_low_23
NF0880_low_23
[»] chr1 (2 HSPs)
chr1 (46-284)||(43338612-43338850)
chr1 (46-284)||(43334177-43334415)
[»] scaffold1395 (1 HSPs)
scaffold1395 (66-284)||(1-219)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 46 - 284
Target Start/End: Original strand, 43338612 - 43338850
Alignment:
Q  46 atcatcacatttgaattgttcaactctgccaatgcatctagctctttcccaaatttatcaagactactcactggaaataccttgtcacaccagttcagct 145  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43338612 atcatcacatttgaattgttcaactttgccaatgcatctagctctttcccaaatttatcaagactactcactggaaataccttgtcacaccagttcagct 43338711  T
Q  146 tcttggcaaagtagattgaaccagatggcataacagccttatagtaagttgaaaactcggttttcagagtgacgtttgacgtttcggcaacagcttccgt 245  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |    
T  43338712 tcttggcgaagtagattgaaccagatggcatgacagccttatagtaagttgaaaacttggttttcagagtaacgtttgacgtttcggcaacagcttccat 43338811  T
Q  246 ggccttcgacaaatcaatgtttgatctgtggattccatt 284  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  43338812 ggccttagacaaatcaatgtttgatctgtggattccatt 43338850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 46 - 284
Target Start/End: Original strand, 43334177 - 43334415
Alignment:
Q  46 atcatcacatttgaattgttcaactctgccaatgcatctagctctttcccaaatttatcaagactactcactggaaataccttgtcacaccagttcagct 145  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43334177 atcatcacatttgaattgtccaactttgccaatgcatctagctctttcccaaatttatcaagactactcactggaaataccttgtcacaccagttcagct 43334276  T
Q  146 tcttggcaaagtagattgaaccagatggcataacagccttatagtaagttgaaaactcggttttcagagtgacgtttgacgtttcggcaacagcttccgt 245  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |    
T  43334277 tcttggcgaagtagattgaaccagatggcatgacagccttatagtaagttgaaaacttggttttcagagtaacgtttgacgtttcggcaacagcttccat 43334376  T
Q  246 ggccttcgacaaatcaatgtttgatctgtggattccatt 284  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  43334377 ggccttagacaaatcaatgtttgatctgtggattccatt 43334415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1395 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: scaffold1395
Description:

Target: scaffold1395; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 66 - 284
Target Start/End: Original strand, 1 - 219
Alignment:
Q  66 caactctgccaatgcatctagctctttcccaaatttatcaagactactcactggaaataccttgtcacaccagttcagcttcttggcaaagtagattgaa 165  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1 caactttgccaatgcatctagctctttcccaaatttatcaagactactcactggaaataccttgtcacaccagttcagcttcttggcgaagtagattgaa 100  T
Q  166 ccagatggcataacagccttatagtaagttgaaaactcggttttcagagtgacgtttgacgtttcggcaacagcttccgtggccttcgacaaatcaatgt 265  Q
    ||||||||||||||||||||||||||||||||||||| | |||| ||||| ||||||||||||| ||||||| ||||| || |||| || ||||||||||    
T  101 ccagatggcataacagccttatagtaagttgaaaacttgattttaagagtaacgtttgacgtttaggcaacaacttccatgaccttagaaaaatcaatgt 200  T
Q  266 ttgatctgtggattccatt 284  Q
    |||||||||||||||||||    
T  201 ttgatctgtggattccatt 219  T

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