View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0880_low_24 (Length: 282)
Name: NF0880_low_24
Description: NF0880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0880_low_24 |
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| [»] scaffold0386 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 50 - 236
Target Start/End: Complemental strand, 38426104 - 38425918
Alignment:
| Q |
50 |
ggacatcatccataaaactttttgctgctttattttctttcatttccacaatcctagattacaatatcataacttcaaagtccatgaaattaagaagaaa |
149 |
Q |
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| T |
38426104 |
ggacatcatacataaaactttttgcggctttattttctttcatttccacaatcctagattacaatatcataacttcaaagtccatgaaattaagaagaaa |
38426005 |
T |
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| Q |
150 |
aaatacgaatatttgaaacatgaaaaataaaagacaacttgtggaatattctagcattagatatattatatagtttatttgctagcc |
236 |
Q |
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| T |
38426004 |
aaatacgaatatttgaaacatgaaaaataaaagacaacttgtggaatattctagcattagatatattatatagtttatttgctagcc |
38425918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 68 - 155
Target Start/End: Complemental strand, 38400262 - 38400175
Alignment:
| Q |
68 |
tttttgctgctttattttctttcatttccacaatcctagattacaatatcataacttcaaagtccatgaaattaagaagaaaaaatac |
155 |
Q |
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| T |
38400262 |
tttttgctgctttattttatttcatttcaacaatcttagattacaatatcataactttaaagtccatgaaattaagaagaaaaaatac |
38400175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 68 - 155
Target Start/End: Complemental strand, 38402805 - 38402718
Alignment:
| Q |
68 |
tttttgctgctttattttctttcatttccacaatcctagattacaatatcataacttcaaagtccatgaaattaagaagaaaaaatac |
155 |
Q |
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| T |
38402805 |
tttttgctgctttattttatttcatttcaacaatcttagattacaatatcataactttaaagtccatgaaattaagaagaaaaaatac |
38402718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 68 - 155
Target Start/End: Complemental strand, 38404765 - 38404678
Alignment:
| Q |
68 |
tttttgctgctttattttctttcatttccacaatcctagattacaatatcataacttcaaagtccatgaaattaagaagaaaaaatac |
155 |
Q |
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| T |
38404765 |
tttttgctgctttattttatttcatttcaacaatcttagattacaatatcataactttaaagtccatgaaattaagaagaaaaaatac |
38404678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 38400137 - 38400084
Alignment:
| Q |
182 |
gacaacttgtggaatattctagcattagatatattatatagtttatttgctagcc |
236 |
Q |
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| T |
38400137 |
gacaactcgtggaatattctagca-taggtatattatataattaatttgctagcc |
38400084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 38402679 - 38402626
Alignment:
| Q |
182 |
gacaacttgtggaatattctagcattagatatattatatagtttatttgctagcc |
236 |
Q |
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| T |
38402679 |
gacaactcgtggaatattctagca-taggtatattatataattaatttgctagcc |
38402626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 141
Target Start/End: Original strand, 5719519 - 5719573
Alignment:
| Q |
87 |
tttcatttccacaatcctagattacaatatcataacttcaaagtccatgaaatta |
141 |
Q |
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| T |
5719519 |
tttcatttccatcatcatagattacaaaatcataactttaaagtccatggaatta |
5719573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 4232 - 4288
Alignment:
| Q |
87 |
tttcatttccacaatcctagattacaatatcataacttcaaagtccatgaaattaag |
143 |
Q |
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| T |
4232 |
tttcatttccatcatcttagagtacaacatcataacttcaaggtccataaaattaag |
4288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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