View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0880_low_25 (Length: 280)
Name: NF0880_low_25
Description: NF0880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0880_low_25 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 22 - 280
Target Start/End: Original strand, 2143574 - 2143832
Alignment:
| Q |
22 |
catcatcaagtatacaataagaataataataaggtgaaagttgaatcaataatttatcaaaatcttcattcaacaaagaaaattaaacaaaacccgcagt |
121 |
Q |
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| T |
2143574 |
catcatcaagtatacaataagaataataataaggtgaaagttgaatcaataatttatcaaaatcttcattcaacaaagaaaattaaacaaaacccgcagt |
2143673 |
T |
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| Q |
122 |
aataacagttaacttttacacaaatctaataacaaaaacaaacaagatcttactgaagttcacaataaaggggtaataatatcatagacttcatccaaag |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2143674 |
aataacagttaacttttacacaaatctaataacaaaaacaaacaagatcttactgaagttcacaataaaggggtaataatatcatagacttcatccaaag |
2143773 |
T |
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| Q |
222 |
tagatcaaatatctaaaataacagtcactaaattacaatacaataaaataaacatatat |
280 |
Q |
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| T |
2143774 |
tagatcaaatatctaaaataacagtcactaaattacaatacaataaaataaacatatat |
2143832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 37 - 211
Target Start/End: Original strand, 2085946 - 2086129
Alignment:
| Q |
37 |
aataagaataataataaggtgaaagttgaatcaataatttatcaaaatcttc---------attcaacaaagaaaattaaacaaaacccgcagtaataac |
127 |
Q |
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| T |
2085946 |
aataagaatactaataagctgaaaattgaaacaataatttatgaaaatcttctaaatcttaattcaacaaagaatattgaacaaaacttgcagtaataac |
2086045 |
T |
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| Q |
128 |
agttaacttttacacaaatctaataacaaaaacaaacaagatcttactgaagttcacaataaaggggtaataatatcatagact |
211 |
Q |
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||||||||||||||||||| |||||||||||||||| | ||||||||||||| ||||||| |||||||| |||||||||| |
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| T |
2086046 |
agttaacttttacacaaatataataacaaaaacaaatgatatcttactgaagtctacaataatagggtaatataatcatagact |
2086129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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