View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0880_low_27 (Length: 275)
Name: NF0880_low_27
Description: NF0880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0880_low_27 |
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| [»] scaffold0231 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 45 - 242
Target Start/End: Complemental strand, 22317810 - 22317613
Alignment:
| Q |
45 |
catcatcatcctcacttgtagagtcataattactgctagaatctgtgaaagaaattttttaactatcaacggactatatgaatatatgaaacatgaaaat |
144 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22317810 |
catcatcatcctcacttgtagagtcatagttactgctagaatctgtgaaagaaattttttaactatcaacgaactatatgaatatatgaaacatgaaaat |
22317711 |
T |
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| Q |
145 |
aacctttatcaactaatgcattgaattacctgaattatcccatggattataatcggaatcattttcatcttcactttcatagacattattgctctctg |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22317710 |
aacctttatcaactaatgcattgaattacctgaattatcccatggattataatcggaatcattttcatcttcactttcatagacattattgctctctg |
22317613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 29736853 - 29736907
Alignment:
| Q |
169 |
attacctgaattatcccatggattataatcggaatcattttcatcttcactttca |
223 |
Q |
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|||||||||| | ||| || |||||||||| |||||| ||||||||||||||||| |
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| T |
29736853 |
attacctgaaatttcctatagattataatcagaatcagtttcatcttcactttca |
29736907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0231 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0231
Description:
Target: scaffold0231; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 4792 - 4709
Alignment:
| Q |
159 |
aatgcattgaattacctgaattatcccatggattataatcggaatcattttcatcttcactttcatagacattattgctctctg |
242 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||| ||||| ||||| | ||||||||| || ||||||||||||||| |
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| T |
4792 |
aatgcatttaattacctgaattttcccatggattataatcataatcagtttcaacctcactttcaaagtcattattgctctctg |
4709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 25823235 - 25823289
Alignment:
| Q |
169 |
attacctgaattatcccatggattataatcggaatcattttcatcttcactttca |
223 |
Q |
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|||||||||| | |||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
25823235 |
attacctgaaatttcccatagattataatcggaatcagtttcatcttcactttca |
25823289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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