View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0880_low_30 (Length: 252)

Name: NF0880_low_30
Description: NF0880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0880_low_30
NF0880_low_30
[»] chr5 (20 HSPs)
chr5 (131-252)||(37214701-37214822)
chr5 (131-189)||(32837081-32837139)
chr5 (131-187)||(22937999-22938055)
chr5 (131-187)||(43490793-43490849)
chr5 (131-187)||(7270241-7270297)
chr5 (24-71)||(37214882-37214929)
chr5 (131-168)||(2836699-2836736)
chr5 (131-180)||(18031717-18031766)
chr5 (24-71)||(31862988-31863035)
chr5 (24-71)||(42061602-42061649)
chr5 (131-163)||(4100381-4100413)
chr5 (24-71)||(21336558-21336605)
chr5 (24-71)||(43490909-43490956)
chr5 (131-165)||(14016980-14017014)
chr5 (131-165)||(17747639-17747673)
chr5 (131-165)||(28788345-28788379)
chr5 (131-165)||(30065584-30065618)
chr5 (131-165)||(39191353-39191387)
chr5 (24-69)||(28442018-28442063)
chr5 (132-187)||(21827985-21828041)
[»] chr4 (20 HSPs)
chr4 (188-252)||(45165571-45165635)
chr4 (131-187)||(5680469-5680525)
chr4 (131-179)||(14571034-14571082)
chr4 (24-71)||(18910720-18910767)
chr4 (131-165)||(40794214-40794248)
chr4 (133-187)||(49269735-49269789)
chr4 (131-165)||(53010402-53010436)
chr4 (133-189)||(12782104-12782160)
chr4 (131-187)||(24045001-24045057)
chr4 (131-187)||(52007375-52007431)
chr4 (24-71)||(5721808-5721855)
chr4 (24-71)||(15431280-15431327)
chr4 (24-71)||(15437894-15437941)
chr4 (131-190)||(44809848-44809907)
chr4 (131-165)||(3718358-3718392)
chr4 (131-165)||(21419001-21419035)
chr4 (131-165)||(29324001-29324035)
chr4 (131-165)||(34320788-34320822)
chr4 (24-69)||(19861124-19861169)
chr4 (131-187)||(27013229-27013286)
[»] scaffold0015 (1 HSPs)
scaffold0015 (131-189)||(197240-197298)
[»] chr3 (22 HSPs)
chr3 (131-187)||(16185600-16185656)
chr3 (187-249)||(8534122-8534184)
chr3 (131-188)||(31548550-31548607)
chr3 (131-187)||(35411676-35411733)
chr3 (131-180)||(19302308-19302357)
chr3 (131-188)||(53814970-53815027)
chr3 (131-187)||(34984702-34984758)
chr3 (131-187)||(54460367-54460423)
chr3 (24-71)||(6922006-6922053)
chr3 (131-182)||(9380016-9380067)
chr3 (131-165)||(10880798-10880832)
chr3 (131-165)||(16243188-16243222)
chr3 (131-165)||(43808900-43808934)
chr3 (30-71)||(538131-538172)
chr3 (24-68)||(52198424-52198468)
chr3 (24-71)||(16185493-16185540)
chr3 (24-71)||(18645578-18645625)
chr3 (131-174)||(19305491-19305534)
chr3 (131-165)||(54736794-54736828)
chr3 (30-71)||(10884134-10884175)
chr3 (131-187)||(29344716-29344773)
chr3 (131-187)||(41976321-41976377)
[»] scaffold0005 (2 HSPs)
scaffold0005 (131-179)||(246294-246342)
scaffold0005 (30-69)||(291081-291120)
[»] chr8 (14 HSPs)
chr8 (131-187)||(5540939-5540995)
chr8 (131-190)||(14420861-14420920)
chr8 (131-187)||(5981164-5981220)
chr8 (24-71)||(25595521-25595568)
chr8 (131-187)||(45156862-45156918)
chr8 (24-71)||(10663127-10663174)
chr8 (131-165)||(12582240-12582274)
chr8 (30-71)||(18722152-18722193)
chr8 (131-190)||(18826778-18826837)
chr8 (24-71)||(25228128-25228175)
chr8 (24-71)||(25592336-25592383)
chr8 (24-71)||(45156755-45156802)
chr8 (24-68)||(5540832-5540876)
chr8 (131-187)||(25228016-25228070)
[»] chr7 (12 HSPs)
chr7 (131-187)||(8276012-8276068)
chr7 (131-187)||(9865586-9865642)
chr7 (131-187)||(45288082-45288138)
chr7 (131-187)||(45291418-45291474)
chr7 (24-71)||(26556626-26556673)
chr7 (131-189)||(20081584-20081642)
chr7 (131-187)||(9273978-9274034)
chr7 (24-71)||(8276128-8276175)
chr7 (135-165)||(4596872-4596902)
chr7 (131-165)||(4694745-4694779)
chr7 (131-165)||(17729995-17730029)
chr7 (24-69)||(10431504-10431549)
[»] chr6 (8 HSPs)
chr6 (131-187)||(9953036-9953092)
chr6 (24-69)||(23379650-23379695)
chr6 (24-69)||(23388989-23389034)
chr6 (131-187)||(28666120-28666176)
chr6 (131-165)||(10289208-10289242)
chr6 (32-71)||(5739034-5739073)
chr6 (30-68)||(9953155-9953193)
chr6 (32-69)||(34501532-34501569)
[»] chr1 (9 HSPs)
chr1 (188-252)||(2406609-2406673)
chr1 (131-187)||(29644252-29644308)
chr1 (131-187)||(2404722-2404778)
chr1 (24-68)||(49499405-49499449)
chr1 (32-71)||(1951190-1951229)
chr1 (24-71)||(2793415-2793462)
chr1 (24-71)||(29644145-29644192)
chr1 (24-71)||(34733100-34733147)
chr1 (132-187)||(41059178-41059234)
[»] scaffold0080 (2 HSPs)
scaffold0080 (131-180)||(26260-26310)
scaffold0080 (24-71)||(26361-26408)
[»] scaffold1993 (1 HSPs)
scaffold1993 (131-187)||(1045-1101)
[»] chr2 (15 HSPs)
chr2 (131-187)||(25139984-25140040)
chr2 (131-165)||(5665852-5665886)
chr2 (131-165)||(13972757-13972791)
chr2 (131-165)||(43722926-43722960)
chr2 (24-69)||(36809272-36809317)
chr2 (131-187)||(3874482-3874538)
chr2 (131-187)||(10599951-10600007)
chr2 (24-71)||(25139877-25139924)
chr2 (24-71)||(25869951-25869998)
chr2 (24-71)||(26358788-26358835)
chr2 (131-165)||(13136784-13136818)
chr2 (33-71)||(30275537-30275575)
chr2 (131-165)||(31430582-31430616)
chr2 (131-165)||(38014658-38014692)
chr2 (131-164)||(5104974-5105007)
[»] scaffold0757 (1 HSPs)
scaffold0757 (131-188)||(4562-4619)
[»] scaffold0520 (1 HSPs)
scaffold0520 (131-187)||(4824-4880)
[»] scaffold0270 (3 HSPs)
scaffold0270 (131-163)||(4364-4396)
scaffold0270 (131-163)||(11494-11526)
scaffold0270 (131-163)||(1004-1036)
[»] scaffold0381 (1 HSPs)
scaffold0381 (131-187)||(6497-6554)


Alignment Details
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 131 - 252
Target Start/End: Complemental strand, 37214822 - 37214701
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatcaatacaactccttgataatctcaaatccgataactttcgtttgg 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37214822 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatcaatacaactccttgataatctcaaatctgataactttcgtttgg 37214723  T
Q  231 agagtagtaagtagactatgac 252  Q
    ||||||||||||||||||||||    
T  37214722 agagtagtaagtagactatgac 37214701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 32837139 - 32837081
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatcaat 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  32837139 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacatactgtcatcaat 32837081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 22937999 - 22938055
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  22937999 tgaactcaaaaatatcataaaaagactctaaaaacgtggaatgacagactgtcatca 22938055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 43490849 - 43490793
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  43490849 tgaactcaaaaatatcataaaaagactctaaaaatgtgaaatgacagactgtcatca 43490793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 7270297 - 7270241
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||| ||||    
T  7270297 tgaactcaaaaatatcataaaaagactctaaaaatagcgaatgacagactgtcatca 7270241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 37214929 - 37214882
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  37214929 tcatcctgtgctccaaatcgtgacatgttttcaacaattgtgatacga 37214882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 2836736 - 2836699
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtg 168  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2836736 tgaactcaaaaatatcataaaaagactctaaaaatgtg 2836699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 18031766 - 18031717
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagact 180  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||| ||||    
T  18031766 tgaactcgaaaatatcataaaaagactctaaaaatatggaatgacggact 18031717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 31863035 - 31862988
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||||    
T  31863035 tcatcatgtgctctaaatcgtgacacgttttcaacaatcgtgacacga 31862988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 42061649 - 42061602
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    |||||||||||| |||||||||||| |||||||||||| |||||||||    
T  42061649 tcatcatgtgcttcaaatcgtgacacgttttcaacaatcgtgacacga 42061602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 4100381 - 4100413
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaa 163  Q
    |||||||||||||||||||||||||||||||||    
T  4100381 tgaactcaaaaatatcataaaaagactctaaaa 4100413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 21336558 - 21336605
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||| ||||||| |||||||||||||||||||||||  |||||||||    
T  21336558 tcatcctgtgctctaaatcgtgacatgttttcaacaaccgtgacacga 21336605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 43490956 - 43490909
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||| |||||||| |||||||||| |||||||||||| |||||||||    
T  43490956 tcatcctgtgctcctaatcgtgacacgttttcaacaatcgtgacacga 43490909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Original strand, 14016980 - 14017014
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    ||||||||||| |||||||||||||||||||||||    
T  14016980 tgaactcaaaattatcataaaaagactctaaaaat 14017014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 17747673 - 17747639
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    ||||||||||| |||||||||||||||||||||||    
T  17747673 tgaactcaaaattatcataaaaagactctaaaaat 17747639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Original strand, 28788345 - 28788379
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    |||||| ||||||||||||||||||||||||||||    
T  28788345 tgaactaaaaaatatcataaaaagactctaaaaat 28788379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 30065618 - 30065584
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    |||| ||||||||||||||||||||||||||||||    
T  30065618 tgaattcaaaaatatcataaaaagactctaaaaat 30065584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 39191387 - 39191353
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    ||||||||||| |||||||||||||||||||||||    
T  39191387 tgaactcaaaagtatcataaaaagactctaaaaat 39191353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 28442018 - 28442063
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacac 69  Q
    ||||| ||||||| ||||||||||| |||||||||||| |||||||    
T  28442018 tcatcctgtgctctaaatcgtgacacgttttcaacaatcgtgacac 28442063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 21827985 - 21828041
Alignment:
Q  132 gaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    ||||||||||||||||| |||||||||||||||||   ||||||| |||||| ||||    
T  21827985 gaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 21828041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 45165635 - 45165571
Alignment:
Q  188 atacaactccttgataatctcaaatccgataactttcgtttggagagtagtaagtagactatgac 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45165635 atacaactccttgataatctcaaatccgataactttcgtttggagagtagtaagtagactatgac 45165571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 5680525 - 5680469
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  5680525 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagtctgtcatca 5680469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 14571082 - 14571034
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagac 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14571082 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagac 14571034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 18910767 - 18910720
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||||    
T  18910767 tcatcatgtgctctaaatcgtgacacgttttcaacaatcgtgacacga 18910720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 40794248 - 40794214
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    |||||||||||||||||||||||||||||||||||    
T  40794248 tgaactcaaaaatatcataaaaagactctaaaaat 40794214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 49269789 - 49269735
Alignment:
Q  133 aactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    ||||||||||||||||||||| |||||||||||||  |||||| |||||| ||||    
T  49269789 aactcaaaaatatcataaaaaaactctaaaaatgtaaaatgactgactgtcatca 49269735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 165
Target Start/End: Original strand, 53010402 - 53010436
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    |||||||||||||||||||||||||||||||||||    
T  53010402 tgaactcaaaaatatcataaaaagactctaaaaat 53010436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 12782160 - 12782104
Alignment:
Q  133 aactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatcaat 189  Q
    |||||||||||||||||||| ||||||||||||   ||||||| |||||| ||||||    
T  12782160 aactcaaaaatatcataaaatgactctaaaaatagcgaatgactgactgtcatcaat 12782104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 24045001 - 24045057
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    ||||||||||||||||| |||||||||||||||||   ||||||| |||||| ||||    
T  24045001 tgaactcaaaaatatcaaaaaaagactctaaaaataacgaatgactgactgtcatca 24045057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 52007375 - 52007431
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    ||||||||| |||||||||||||||||||||||||   ||||||| |||||| ||||    
T  52007375 tgaactcaacaatatcataaaaagactctaaaaatagcgaatgactgactgtcatca 52007431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 5721808 - 5721855
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||| |||||| |||||||||||| |||||||||||| |||||||||    
T  5721808 tcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgacacga 5721855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 15431327 - 15431280
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||| ||||||||||||||||||| |||||| ||||| |||||||||    
T  15431327 tcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacga 15431280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 15437941 - 15437894
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||| ||||||||||||||||||| |||||| ||||| |||||||||    
T  15437941 tcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacga 15437894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 44809848 - 44809907
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatcaata 190  Q
    ||||||||||| |||||||||||||||||||||||    |||||| |||||| |||||||    
T  44809848 tgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatcaata 44809907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 3718392 - 3718358
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    ||||||||||||||||||||||| |||||||||||    
T  3718392 tgaactcaaaaatatcataaaaatactctaaaaat 3718358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 21419035 - 21419001
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    |||||||||||||||||||||||||| ||||||||    
T  21419035 tgaactcaaaaatatcataaaaagacactaaaaat 21419001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 29324035 - 29324001
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    ||||||||||| |||||||||||||||||||||||    
T  29324035 tgaactcaaaattatcataaaaagactctaaaaat 29324001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Original strand, 34320788 - 34320822
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    ||||||||||| |||||||||||||||||||||||    
T  34320788 tgaactcaaaattatcataaaaagactctaaaaat 34320822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 19861124 - 19861169
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacac 69  Q
    ||||| ||||||||||||||||| | |||||||||||| |||||||    
T  19861124 tcatcctgtgctccaaatcgtgatacgttttcaacaatcgtgacac 19861169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 27013286 - 27013229
Alignment:
Q  131 tgaactcaaaaatatcata-aaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    ||||||||||||||||||| ||||||||||||||||   ||||||| |||||| ||||    
T  27013286 tgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 27013229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 197298 - 197240
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatcaat 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  197298 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcaat 197240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 16185600 - 16185656
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16185600 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 16185656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 8534184 - 8534122
Alignment:
Q  187 aatacaactccttgataatctcaaatccgataactttcgtttggagagtagtaagtagactat 249  Q
    ||||||| ||||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||    
T  8534184 aatacaaatccttgataatctcaaatccgataagtttcgtttgaagaatagtaagtaaactat 8534122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 31548607 - 31548550
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatcaa 188  Q
    |||||||||||||||||||||||||||||||||||||| ||||||  ||||| |||||    
T  31548607 tgaactcaaaaatatcataaaaagactctaaaaatgtgaaatgacgaactgtcatcaa 31548550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 35411733 - 35411676
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatg-tggaatgacagactgttatca 187  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||    
T  35411733 tgaactcaaaaatatcataaaaagactctaaaaatgttgaaatgacagactgtcatca 35411676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 19302308 - 19302357
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagact 180  Q
    ||||||||||||||||||||||||||||||||||| || |||||| ||||    
T  19302308 tgaactcaaaaatatcataaaaagactctaaaaatatgaaatgacggact 19302357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 53815027 - 53814970
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatcaa 188  Q
    |||||||||||||||||||||||||||||||||||   ||||||| |||||| |||||    
T  53815027 tgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatcaa 53814970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 34984702 - 34984758
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    |||||||||||||||||||||||||||||||||||   ||||||| |||||| ||||    
T  34984702 tgaactcaaaaatatcataaaaagactctaaaaataacgaatgactgactgtcatca 34984758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 54460423 - 54460367
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    |||||||||||||||||||||||||||||||||||   ||||||| |||||| ||||    
T  54460423 tgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 54460367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 6922053 - 6922006
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||||||||||||||||||||||| |||||| ||||| |||||||||    
T  6922053 tcatcatgtgctccaaatcgtgacacgttttcgacaatcgtgacacga 6922006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 9380067 - 9380016
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgt 182  Q
    |||||||||||||||||||||||||||||||||||   ||||||| ||||||    
T  9380067 tgaactcaaaaatatcataaaaagactctaaaaatagcgaatgactgactgt 9380016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 10880832 - 10880798
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    |||||||||||||||||||||||||||||||||||    
T  10880832 tgaactcaaaaatatcataaaaagactctaaaaat 10880798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 16243222 - 16243188
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    |||||||||||||||||||||||||||||||||||    
T  16243222 tgaactcaaaaatatcataaaaagactctaaaaat 16243188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 43808934 - 43808900
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    |||||||||||||||||||||||||||||||||||    
T  43808934 tgaactcaaaaatatcataaaaagactctaaaaat 43808900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 538172 - 538131
Alignment:
Q  30 tgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  538172 tgtgctccaaatcgtgacacgttttcaacaatcgtgacacga 538131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 52198468 - 52198424
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgaca 68  Q
    ||||||||||||| ||||||||||| |||||||||||| ||||||    
T  52198468 tcatcatgtgctctaaatcgtgacacgttttcaacaatcgtgaca 52198424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 16185493 - 16185540
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||| ||||||| ||| |||||||||||||||||||| |||||||||    
T  16185493 tcatcctgtgctctaaaacgtgacatgttttcaacaatcgtgacacga 16185540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 18645578 - 18645625
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||| |||||| |||||||||||| |||||||||||| |||||||||    
T  18645578 tcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgacacga 18645625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 174
Target Start/End: Original strand, 19305491 - 19305534
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatga 174  Q
    ||||||||||||||| ||||||||||||||||||| || |||||    
T  19305491 tgaactcaaaaatattataaaaagactctaaaaatatgaaatga 19305534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Original strand, 54736794 - 54736828
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    ||||||||||| |||||||||||||||||||||||    
T  54736794 tgaactcaaaagtatcataaaaagactctaaaaat 54736828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 10884175 - 10884134
Alignment:
Q  30 tgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    |||||| |||||||||||| |||||||||||| |||||||||    
T  10884175 tgtgcttcaaatcgtgacaggttttcaacaatcgtgacacga 10884134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 29344716 - 29344773
Alignment:
Q  131 tgaactcaaaaatatcataa-aaagactctaaaaatgtggaatgacagactgttatca 187  Q
    |||||||||||||||||||| |||||||||||||||   ||||||| |||||| ||||    
T  29344716 tgaactcaaaaatatcataagaaagactctaaaaatagtgaatgactgactgtcatca 29344773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 41976377 - 41976321
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    ||||||||||||||| ||||||| |||||||||||   ||||||| |||||| ||||    
T  41976377 tgaactcaaaaatattataaaaacactctaaaaatagcgaatgactgactgtcatca 41976321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 246294 - 246342
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagac 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  246294 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagac 246342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 291120 - 291081
Alignment:
Q  30 tgtgctccaaatcgtgacatgttttcaacaattgtgacac 69  Q
    ||||||||||||||||||| |||||||||||| |||||||    
T  291120 tgtgctccaaatcgtgacacgttttcaacaatcgtgacac 291081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 5540939 - 5540995
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  5540939 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacaaactgtcatca 5540995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 14420920 - 14420861
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatcaata 190  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  14420920 tgaactaaaaaatatcataaaaagactctaaaaatgtggaatgagagactgtcatcaata 14420861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 5981164 - 5981220
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||    
T  5981164 tgaactcaaaaatatcataaaaagactctaaaaatgtgaaatgacggactgtcatca 5981220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 25595521 - 25595568
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||    
T  25595521 tcatcatgtgctccaaatcgtgacacgttttcaacaatcgtgacacga 25595568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 45156862 - 45156918
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    ||||||||||||||||||||||||||||||||||| | |||||| | ||||| ||||    
T  45156862 tgaactcaaaaatatcataaaaagactctaaaaatatagaatgataaactgtcatca 45156918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 10663174 - 10663127
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    |||| |||||||||||||| |||||||||||||||||| |||||||||    
T  10663174 tcattatgtgctccaaatcatgacatgttttcaacaatcgtgacacga 10663127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 12582274 - 12582240
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    |||||||||||||||||||||||||||||||||||    
T  12582274 tgaactcaaaaatatcataaaaagactctaaaaat 12582240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 18722152 - 18722193
Alignment:
Q  30 tgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  18722152 tgtgctccaaatcgtgacacgttttcaacaatcgtgacacga 18722193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 18826778 - 18826837
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatcaata 190  Q
    ||||||||||| |||||||||||||||||||||||    |||||| |||||| |||||||    
T  18826778 tgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatcaata 18826837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 25228175 - 25228128
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||||||||||||||||||||||| ||||||| |||| | |||||||    
T  25228175 tcatcatgtgctccaaatcgtgacacgttttcagcaatcgagacacga 25228128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 25592336 - 25592383
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    |||||||||||||||||||| ||||  ||||||||||| |||||||||    
T  25592336 tcatcatgtgctccaaatcgggacacattttcaacaatcgtgacacga 25592383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 45156755 - 45156802
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||| |||||||||||||||||||  ||||||||||| |||||||||    
T  45156755 tcatcctgtgctccaaatcgtgacacattttcaacaatcgtgacacga 45156802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 5540832 - 5540876
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgaca 68  Q
    ||||| |||||| |||||||||||| |||||||||||| ||||||    
T  5540832 tcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgaca 5540876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 25228070 - 25228016
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    |||||||||||||||||| |||||||||||||| |||| |||| |||||||| ||||    
T  25228070 tgaactcaaaaatatcat-aaaagactctaaaattgtgcaatg-cagactgtcatca 25228016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 8276068 - 8276012
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  8276068 tgaactcaaaaatatcataaaaagactctaaaaatatggaatgacagactgtcatca 8276012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 9865586 - 9865642
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    |||||||||||||||||||||||||||||||||||   ||||||| |||||| ||||    
T  9865586 tgaactcaaaaatatcataaaaagactctaaaaatagcgaatgactgactgtcatca 9865642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 45288082 - 45288138
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    |||||||||||||||||||||||||||||||||||   ||||||| |||||| ||||    
T  45288082 tgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 45288138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 45291418 - 45291474
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    |||||||||||||||||||||||||||||||||||   ||||||| |||||| ||||    
T  45291418 tgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 45291474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 26556673 - 26556626
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||||    
T  26556673 tcatcatgtgctctaaatcgtgacacgttttcaacaatcgtgacacga 26556626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 20081584 - 20081642
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatcaat 189  Q
    ||||||||||||||||||||||| |||||||||||   ||||||| |||||| ||||||    
T  20081584 tgaactcaaaaatatcataaaaacactctaaaaatagtgaatgactgactgtcatcaat 20081642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 9273978 - 9274034
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    ||||||| ||||||||||||||||||| | |||||||| |||||| |||||| ||||    
T  9273978 tgaactccaaaatatcataaaaagactttgaaaatgtgaaatgacggactgtcatca 9274034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 8276175 - 8276128
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||||||||||||||||||||| | ||||||||||||  ||||||||    
T  8276175 tcatcatgtgctccaaatcgtgatacgttttcaacaatcatgacacga 8276128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 165
Target Start/End: Original strand, 4596872 - 4596902
Alignment:
Q  135 ctcaaaaatatcataaaaagactctaaaaat 165  Q
    |||||||||||||||||||||||||||||||    
T  4596872 ctcaaaaatatcataaaaagactctaaaaat 4596902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 4694779 - 4694745
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    ||||||||||||||||||| |||||||||||||||    
T  4694779 tgaactcaaaaatatcatagaaagactctaaaaat 4694745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 17730029 - 17729995
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    |||||||||||||||||||||| ||||||||||||    
T  17730029 tgaactcaaaaatatcataaaaggactctaaaaat 17729995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 10431549 - 10431504
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacac 69  Q
    ||||| ||||||| ||||||||||| |||||||||||| |||||||    
T  10431549 tcatcctgtgctctaaatcgtgacacgttttcaacaatcgtgacac 10431504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 9953092 - 9953036
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  9953092 tgaactcaaaaatatcataaaaagactctaaaaatgtgaaatgacagactgtcatca 9953036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 23379650 - 23379695
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacac 69  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||    
T  23379650 tcatcatgtgctccaaatcgtgacacgttttcaacaatcgtgacac 23379695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 23388989 - 23389034
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacac 69  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||    
T  23388989 tcatcatgtgctccaaatcgtgacacgttttcaacaatcgtgacac 23389034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 28666120 - 28666176
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    |||||||||||||||||||||||||||||||||||   ||||||| |||||| ||||    
T  28666120 tgaactcaaaaatatcataaaaagactctaaaaataacgaatgactgactgtcatca 28666176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 10289242 - 10289208
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    |||||||||||||||||||||||||||||||||||    
T  10289242 tgaactcaaaaatatcataaaaagactctaaaaat 10289208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 5739034 - 5739073
Alignment:
Q  32 tgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||||||||||||||||||||| |||||| |||||||||    
T  5739034 tgctccaaatcgtgacatgtttttaacaatcgtgacacga 5739073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 9953193 - 9953155
Alignment:
Q  30 tgtgctccaaatcgtgacatgttttcaacaattgtgaca 68  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  9953193 tgtgctccaaatcgtgacacgttttcaacaatcgtgaca 9953155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 34501569 - 34501532
Alignment:
Q  32 tgctccaaatcgtgacatgttttcaacaattgtgacac 69  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  34501569 tgctccaaatcgtgacacgttttcaacaatcgtgacac 34501532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 2406609 - 2406673
Alignment:
Q  188 atacaactccttgataatctcaaatccgataactttcgtttggagagtagtaagtagactatgac 252  Q
    |||||| ||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||    
T  2406609 atacaaatccttgataatcttaaatccgataactttcgtttgaagagtagcaagtagactatgac 2406673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 29644252 - 29644308
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  29644252 tgaactcaaaaatatcataaaaagactctataaatgtggaatgacagactgtcatca 29644308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 2404778 - 2404722
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    ||||||||||||||| |||||||||||||||||||   ||||||| |||||| ||||    
T  2404778 tgaactcaaaaatattataaaaagactctaaaaatagcgaatgactgactgtcatca 2404722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 49499405 - 49499449
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgaca 68  Q
    ||||||| ||||||||||||||||| |||||||||||| ||||||    
T  49499405 tcatcatatgctccaaatcgtgacacgttttcaacaatcgtgaca 49499449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 1951190 - 1951229
Alignment:
Q  32 tgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  1951190 tgctccaaatcgtgacacgttttcaacaatcgtgacacga 1951229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 2793462 - 2793415
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||| |||||| |||||||||||| |||||||||||| |||||||||    
T  2793462 tcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgacacga 2793415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 29644145 - 29644192
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||| ||||||||||||||||| | |||||||||||| |||||||||    
T  29644145 tcatcctgtgctccaaatcgtgatacgttttcaacaatcgtgacacga 29644192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 34733100 - 34733147
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||| ||||||||||||| |||||||||||||||||| ||| |||||    
T  34733100 tcatcctgtgctccaaatcctgacatgttttcaacaatcgtgtcacga 34733147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 41059178 - 41059234
Alignment:
Q  132 gaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    ||||||||||||||||| |||||||||||||||||   ||||||| |||||| ||||    
T  41059178 gaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 41059234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 26310 - 26260
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactcta-aaaatgtggaatgacagact 180  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26310 tgaactcaaaaatatcataaaaagactctaaaaaatgtggaatgacagact 26260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 26408 - 26361
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||| |||||| |||||||||||| |||||||||||| |||||||||    
T  26408 tcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgacacga 26361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1993 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1993
Description:

Target: scaffold1993; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 1101 - 1045
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| |||||| ||||    
T  1101 tgaactccaaaatatcataaaaagactctaaaaatgtgaaatgactgactgtcatca 1045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 25139984 - 25140040
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||| |||||| ||||    
T  25139984 tgaactcaaaaatatcataaaaaaactctaaaattgtggaatgactgactgtcatca 25140040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 5665886 - 5665852
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    |||||||||||||||||||||||||||||||||||    
T  5665886 tgaactcaaaaatatcataaaaagactctaaaaat 5665852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 165
Target Start/End: Original strand, 13972757 - 13972791
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    |||||||||||||||||||||||||||||||||||    
T  13972757 tgaactcaaaaatatcataaaaagactctaaaaat 13972791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 43722960 - 43722926
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    |||||||||||||||||||||||||||||||||||    
T  43722960 tgaactcaaaaatatcataaaaagactctaaaaat 43722926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 36809272 - 36809317
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacac 69  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||    
T  36809272 tcatcctgtgctccaaatcgtgacacgttttcaacaatcgtgacac 36809317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 3874538 - 3874482
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    |||||||||||||||| ||||||||||||||||||   ||||||| |||||| ||||    
T  3874538 tgaactcaaaaatatcctaaaaagactctaaaaataatgaatgactgactgtcatca 3874482  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 10600007 - 10599951
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    ||||||||||||||||||||||||| |||||||||   ||||||| |||||| ||||    
T  10600007 tgaactcaaaaatatcataaaaagattctaaaaatagtgaatgactgactgtcatca 10599951  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 25139877 - 25139924
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||| ||||||||||||||||||| ||| |||||||| |||||||||    
T  25139877 tcatcttgtgctccaaatcgtgacacgttgtcaacaatcgtgacacga 25139924  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 25869998 - 25869951
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||| ||||||||||||||||||| |||||| ||||| |||||||||    
T  25869998 tcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacga 25869951  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 26358835 - 26358788
Alignment:
Q  24 tcatcatgtgctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    ||||| |||||||||||||||| || |||||||||||| |||||||||    
T  26358835 tcatcctgtgctccaaatcgtgccacgttttcaacaatcgtgacacga 26358788  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 13136818 - 13136784
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    |||||||||||||||||||||| ||||||||||||    
T  13136818 tgaactcaaaaatatcataaaatgactctaaaaat 13136784  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 30275537 - 30275575
Alignment:
Q  33 gctccaaatcgtgacatgttttcaacaattgtgacacga 71  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  30275537 gctccaaatcgtgacacgttttcaacaatcgtgacacga 30275575  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Original strand, 31430582 - 31430616
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    ||||||||||| |||||||||||||||||||||||    
T  31430582 tgaactcaaaattatcataaaaagactctaaaaat 31430616  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 38014692 - 38014658
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaat 165  Q
    ||||||||||| |||||||||||||||||||||||    
T  38014692 tgaactcaaaattatcataaaaagactctaaaaat 38014658  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 5105007 - 5104974
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaa 164  Q
    ||||||||||||||||||||||| ||||||||||    
T  5105007 tgaactcaaaaatatcataaaaaaactctaaaaa 5104974  T

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Target: scaffold0757 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 4619 - 4562
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatcaa 188  Q
    |||||||||||||||||||||||||||||||||||   ||||||| |||||| |||||    
T  4619 tgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatcaa 4562  T

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Target: scaffold0520 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 4824 - 4880
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    |||||||||||||||||||||||||||||||||||   ||||||| |||||| ||||    
T  4824 tgaactcaaaaatatcataaaaagactctaaaaataacgaatgactgactgtcatca 4880  T

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Target: scaffold0270 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 4364 - 4396
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaa 163  Q
    |||||||||||||||||||||||||||||||||    
T  4364 tgaactcaaaaatatcataaaaagactctaaaa 4396  T

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Target: scaffold0270; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 11494 - 11526
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaa 163  Q
    |||||||||||||||||||||||||||||||||    
T  11494 tgaactcaaaaatatcataaaaagactctaaaa 11526  T

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Target: scaffold0270; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 1004 - 1036
Alignment:
Q  131 tgaactcaaaaatatcataaaaagactctaaaa 163  Q
    ||||||||||||||||||||||| |||||||||    
T  1004 tgaactcaaaaatatcataaaaatactctaaaa 1036  T

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Target: scaffold0381 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 6497 - 6554
Alignment:
Q  131 tgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgttatca 187  Q
    |||||||||||||||||| |||||||||||||||||   ||||||| |||||| ||||    
T  6497 tgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 6554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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