View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0880_low_31 (Length: 251)
Name: NF0880_low_31
Description: NF0880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0880_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 21580364 - 21580133
Alignment:
| Q |
1 |
taagttttatccaaacagggctaaaacgacactcaaaaactttctaactcacatctgagggaaaaatttgatttgaacggaagaatcgtattattggaat |
100 |
Q |
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| T |
21580364 |
taagttttatccaaacagggctaaaacgacactcaaaaactttctaactcacatcttagggaaaaatttgatttgaacggaagaatcgtattattggaat |
21580265 |
T |
|
| Q |
101 |
ggaaaattgaaagaaaatggagaaaagaattctccactttaccaaggatctttcctctgactcacaatctatcaaatgaacataatgatttaataatatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21580264 |
ggaaaattgaaagaaaatggagaaaagaattctccactttaccaaggatctttcctctgactcacaatctatcaaatgaacataatgatttaataatatc |
21580165 |
T |
|
| Q |
201 |
tcctcatttctccatttatacatgatgatgtc |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
21580164 |
tcctcatttctccatttatacatgatgatgtc |
21580133 |
T |
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