View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0880_low_33 (Length: 246)

Name: NF0880_low_33
Description: NF0880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0880_low_33
NF0880_low_33
[»] chr8 (10 HSPs)
chr8 (171-222)||(11144073-11144124)
chr8 (1-61)||(1604071-1604131)
chr8 (71-128)||(11143973-11144030)
chr8 (1-61)||(11143885-11143945)
chr8 (1-61)||(44551912-44551972)
chr8 (71-128)||(1603987-1604044)
chr8 (83-125)||(44552012-44552054)
chr8 (2-61)||(1661459-1661518)
chr8 (2-49)||(11144247-11144294)
chr8 (186-222)||(44552115-44552151)
[»] chr1 (16 HSPs)
chr1 (171-222)||(30402930-30402981)
chr1 (171-222)||(29394085-29394136)
chr1 (171-222)||(30409487-30409538)
chr1 (71-128)||(29394179-29394236)
chr1 (71-128)||(35163218-35163275)
chr1 (1-61)||(30403109-30403169)
chr1 (1-61)||(30409666-30409726)
chr1 (1-61)||(35163130-35163190)
chr1 (171-214)||(35163318-35163361)
chr1 (87-128)||(30403024-30403065)
chr1 (87-128)||(30409581-30409622)
chr1 (83-128)||(29393818-29393863)
chr1 (1-61)||(29394264-29394324)
chr1 (2-49)||(30402760-30402807)
chr1 (2-49)||(30409317-30409364)
chr1 (2-60)||(35163492-35163550)
[»] chr3 (4 HSPs)
chr3 (171-220)||(55040161-55040210)
chr3 (1-61)||(55040338-55040398)
chr3 (71-125)||(55040256-55040310)
chr3 (2-61)||(55039977-55040036)
[»] chr6 (2 HSPs)
chr6 (1-61)||(32445889-32445949)
chr6 (19-61)||(14986903-14986945)
[»] chr5 (6 HSPs)
chr5 (1-61)||(9260837-9260897)
chr5 (71-125)||(9260755-9260809)
chr5 (169-222)||(9260293-9260346)
chr5 (83-128)||(9260389-9260434)
chr5 (2-61)||(9260474-9260533)
chr5 (186-222)||(9260652-9260688)
[»] chr7 (4 HSPs)
chr7 (83-128)||(13947876-13947921)
chr7 (2-61)||(13948127-13948186)
chr7 (83-128)||(13948226-13948271)
chr7 (186-222)||(13948329-13948365)


Alignment Details
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 11144073 - 11144124
Alignment:
171 taatcaaggggaagacgtatgcgtttggtttgtgttttataggatcctgatg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
11144073 taatcaaggggaagacgtatgcgtttggtttgtgttttataggatcctgatg 11144124  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 1604131 - 1604071
Alignment:
1 ctgttttttgtggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctgc 61  Q
    |||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||    
1604131 ctgttttttgtggtgtgttctcgaggggcagcaggatgtgtagtgcctctttgttggctgc 1604071  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 11143973 - 11144030
Alignment:
71 ggtttctgtttctgtcactaggaaccgttgtgatgttggtgttttaggggatgcacct 128  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||    
11143973 ggtttttggttctgtcactaggaaccgttgtgatgttggtgttttaggggctgcacct 11144030  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 11143885 - 11143945
Alignment:
1 ctgttttttgtggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctgc 61  Q
    |||||||||||||| |||||| || ||||||||||||||||||||| ||||||||||||||    
11143885 ctgttttttgtggtgtgttcttgaggggcagcaggctgtgtagtgcatctttgttggctgc 11143945  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 44551912 - 44551972
Alignment:
1 ctgttttttgtggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctgc 61  Q
    |||||||||||||| |  |||||| ||||||||||||||||||||||||| ||||||||||    
44551912 ctgttttttgtggtgttctctcgaggggcagcaggctgtgtagtgcctctgtgttggctgc 44551972  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 1604044 - 1603987
Alignment:
71 ggtttctgtttctgtcactaggaaccgttgtgatgttggtgttttaggggatgcacct 128  Q
    ||||| || ||||||||||||||| |||| |||||||||||||||||||| |||||||    
1604044 ggtttttggttctgtcactaggaatcgttatgatgttggtgttttaggggctgcacct 1603987  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 44552012 - 44552054
Alignment:
83 tgtcactaggaaccgttgtgatgttggtgttttaggggatgca 125  Q
    ||||||| |||||||||||||||||||||||||||||| ||||    
44552012 tgtcactcggaaccgttgtgatgttggtgttttaggggctgca 44552054  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 1661518 - 1661459
Alignment:
2 tgttttttgtggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctgc 61  Q
    |||||||| |||| || |||||| || ||||||||||||| |||||||| ||||||||||    
1661518 tgttttttatggtgtgctctcgagggacagcaggctgtgtggtgcctctgtgttggctgc 1661459  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 11144247 - 11144294
Alignment:
2 tgttttttgtggtctgttctcgaagggcagcaggctgtgtagtgcctc 49  Q
    ||||||||||||| || ||||||||| ||||||||||||| |||||||    
11144247 tgttttttgtggtgtgctctcgaaggacagcaggctgtgtggtgcctc 11144294  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 44552115 - 44552151
Alignment:
186 cgtatgcgtttggtttgtgttttataggatcctgatg 222  Q
    |||||||||||| ||||||||||||||| ||||||||    
44552115 cgtatgcgtttgatttgtgttttatagggtcctgatg 44552151  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 30402981 - 30402930
Alignment:
171 taatcaaggggaagacgtatgcgtttggtttgtgttttataggatcctgatg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
30402981 taatcaaggggaagacgtatgcgtttggtttgtgttttataggatcctgatg 30402930  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 29394136 - 29394085
Alignment:
171 taatcaaggggaagacgtatgcgtttggtttgtgttttataggatcctgatg 222  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
29394136 taatcaaggggaagacgtatgtgtttggtttgtgttttataggatcctgatg 29394085  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 30409538 - 30409487
Alignment:
171 taatcaaggggaagacgtatgcgtttggtttgtgttttataggatcctgatg 222  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
30409538 taatcaaggggaagacgtatgcgtttgatttgtgttttataggatcctgatg 30409487  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 29394236 - 29394179
Alignment:
71 ggtttctgtttctgtcactaggaaccgttgtgatgttggtgttttaggggatgcacct 128  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||    
29394236 ggtttttggttctgtcactaggaaccgttgtgatgttggtgttttaggggctgcacct 29394179  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 35163218 - 35163275
Alignment:
71 ggtttctgtttctgtcactaggaaccgttgtgatgttggtgttttaggggatgcacct 128  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||    
35163218 ggtttttggttctgtcactaggaaccgttgtgatgttggtgttttaggggctgcacct 35163275  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 30403169 - 30403109
Alignment:
1 ctgttttttgtggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctgc 61  Q
    |||||||||||||| |||||| || ||||||||||||||||||||| ||||||||||||||    
30403169 ctgttttttgtggtgtgttcttgaggggcagcaggctgtgtagtgcatctttgttggctgc 30403109  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 30409726 - 30409666
Alignment:
1 ctgttttttgtggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctgc 61  Q
    |||||||||||||| |||||| || ||||||||||||||||||||| ||||||||||||||    
30409726 ctgttttttgtggtgtgttcttgaggggcagcaggctgtgtagtgcatctttgttggctgc 30409666  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 35163130 - 35163190
Alignment:
1 ctgttttttgtggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctgc 61  Q
    |||||||||||||| |||||| || ||||||||||||||||||||| ||||||||||||||    
35163130 ctgttttttgtggtgtgttcttgaggggcagcaggctgtgtagtgcatctttgttggctgc 35163190  T

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Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 35163318 - 35163361
Alignment:
171 taatcaaggggaagacgtatgcgtttggtttgtgttttatagga 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
35163318 taatcaaggggaagacgtatgcgtttggtttgtgttttatagga 35163361  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 30403065 - 30403024
Alignment:
87 actaggaaccgttgtgatgttggtgttttaggggatgcacct 128  Q
    |||||||||||||||||||||||||||||||||| |||||||    
30403065 actaggaaccgttgtgatgttggtgttttaggggctgcacct 30403024  T

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Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 30409622 - 30409581
Alignment:
87 actaggaaccgttgtgatgttggtgttttaggggatgcacct 128  Q
    |||||||||||||||||||||||||||||||||| |||||||    
30409622 actaggaaccgttgtgatgttggtgttttaggggctgcacct 30409581  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 29393863 - 29393818
Alignment:
83 tgtcactaggaaccgttgtgatgttggtgttttaggggatgcacct 128  Q
    ||||||| |||||||||||||||| ||||||||||||| |||||||    
29393863 tgtcactcggaaccgttgtgatgtaggtgttttaggggctgcacct 29393818  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 29394324 - 29394264
Alignment:
1 ctgttttttgtggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctgc 61  Q
    |||||||| ||||| |||||| || ||||||||| ||||||||||| |||||||| |||||    
29394324 ctgtttttcgtggtgtgttcttgaggggcagcagactgtgtagtgcatctttgttagctgc 29394264  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 30402807 - 30402760
Alignment:
2 tgttttttgtggtctgttctcgaagggcagcaggctgtgtagtgcctc 49  Q
    ||||||||||||| || ||||||||| ||||||||||||| |||||||    
30402807 tgttttttgtggtgtgctctcgaaggacagcaggctgtgtggtgcctc 30402760  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 30409364 - 30409317
Alignment:
2 tgttttttgtggtctgttctcgaagggcagcaggctgtgtagtgcctc 49  Q
    ||||||||||||| || ||||||||| ||||||||||||| |||||||    
30409364 tgttttttgtggtgtgctctcgaaggacagcaggctgtgtggtgcctc 30409317  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 35163492 - 35163550
Alignment:
2 tgttttttgtggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctg 60  Q
    ||||||||||||| || |||||| || || |||||||||| |||||||| |||||||||    
35163492 tgttttttgtggtgtgctctcgagggacaacaggctgtgtggtgcctctgtgttggctg 35163550  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 55040210 - 55040161
Alignment:
171 taatcaaggggaagacgtatgcgtttggtttgtgttttataggatcctga 220  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||    
55040210 taatcaaggggaagacgtatgtgtttggtttgtgttttataggatcctga 55040161  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 55040398 - 55040338
Alignment:
1 ctgttttttgtggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctgc 61  Q
    |||||||||||||| |||||| || ||||||||||||||||||||| ||||||||||||||    
55040398 ctgttttttgtggtgtgttcttgaggggcagcaggctgtgtagtgcatctttgttggctgc 55040338  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 55040310 - 55040256
Alignment:
71 ggtttctgtttctgtcactaggaaccgttgtgatgttggtgttttaggggatgca 125  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||    
55040310 ggtttttggttctgtcactaggaaccgttgtgatgttggtgttttaggggctgca 55040256  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 55040036 - 55039977
Alignment:
2 tgttttttgtggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctgc 61  Q
    ||||||||||||| || |||||| || ||||||||||||| |||||||| ||||||||||    
55040036 tgttttttgtggtgtgctctcgagggacagcaggctgtgtggtgcctctgtgttggctgc 55039977  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 32445889 - 32445949
Alignment:
1 ctgttttttgtggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctgc 61  Q
    |||||||||||||| || |||||| |||||||||||||||||||||||||||||| |||||    
32445889 ctgttttttgtggtgtgctctcgaggggcagcaggctgtgtagtgcctctttgttagctgc 32445949  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 14986945 - 14986903
Alignment:
19 tctcgaagggcagcaggctgtgtagtgcctctttgttggctgc 61  Q
    |||||| |||||| |||||||||||||||||| ||||||||||    
14986945 tctcgaggggcagtaggctgtgtagtgcctctgtgttggctgc 14986903  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 9260897 - 9260837
Alignment:
1 ctgttttttgtggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctgc 61  Q
    |||||||||||||| || |||||| ||||||||||||||||||||||||| ||||||||||    
9260897 ctgttttttgtggtgtgctctcgaggggcagcaggctgtgtagtgcctctgtgttggctgc 9260837  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 9260809 - 9260755
Alignment:
71 ggtttctgtttctgtcactaggaaccgttgtgatgttggtgttttaggggatgca 125  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||    
9260809 ggtttttggttctgtcactaggaaccgttgtgatgttggtgttttaggggttgca 9260755  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 9260346 - 9260293
Alignment:
169 cataatcaaggggaagacgtatgcgtttggtttgtgttttataggatcctgatg 222  Q
    |||||||| | || || |||||||||||||||||||||||||||| ||||||||    
9260346 cataatcatgaggcaggcgtatgcgtttggtttgtgttttatagggtcctgatg 9260293  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 9260434 - 9260389
Alignment:
83 tgtcactaggaaccgttgtgatgttggtgttttaggggatgcacct 128  Q
    ||||||| |||||| ||||||||||||||||||||||| |||||||    
9260434 tgtcactcggaaccattgtgatgttggtgttttaggggctgcacct 9260389  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 9260533 - 9260474
Alignment:
2 tgttttttgtggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctgc 61  Q
    |||||||||| || || |||||| || |||||||||||||||||||||  ||||||||||    
9260533 tgttttttgtagtgtgctctcgagggacagcaggctgtgtagtgcctcggtgttggctgc 9260474  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 9260688 - 9260652
Alignment:
186 cgtatgcgtttggtttgtgttttataggatcctgatg 222  Q
    |||||| ||||||||||| ||||||||||||||||||    
9260688 cgtatgtgtttggtttgtattttataggatcctgatg 9260652  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 13947876 - 13947921
Alignment:
83 tgtcactaggaaccgttgtgatgttggtgttttaggggatgcacct 128  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
13947876 tgtcactaggaaccgttgtgatgttggtgttttaggggctgcacct 13947921  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 13948127 - 13948186
Alignment:
2 tgttttttgtggtctgttctcgaagggcagcaggctgtgtagtgcctctttgttggctgc 61  Q
    ||||||||||||| ||||||||| || ||||||||||||| |||||||| ||||||||||    
13948127 tgttttttgtggtgtgttctcgagggacagcaggctgtgtggtgcctctgtgttggctgc 13948186  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 13948226 - 13948271
Alignment:
83 tgtcactaggaaccgttgtgatgttggtgttttaggggatgcacct 128  Q
    ||||||| |||||||||||||||| ||||||||||||| |||||||    
13948226 tgtcactcggaaccgttgtgatgtaggtgttttaggggctgcacct 13948271  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 13948329 - 13948365
Alignment:
186 cgtatgcgtttggtttgtgttttataggatcctgatg 222  Q
    |||||||||||||||||||||||||| | ||||||||    
13948329 cgtatgcgtttggtttgtgttttatatggtcctgatg 13948365  T

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