View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0880_low_38 (Length: 209)
Name: NF0880_low_38
Description: NF0880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0880_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 35936908 - 35936993
Alignment:
| Q |
114 |
cagtggagtcgaatgttcggttttggatgttgttttctctgattcttaaatgtttgaatttgaagtgtggttgattttgatgatgt |
199 |
Q |
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| T |
35936908 |
cagtggagtcgagtgttcggttttggatgttgttttctctgattcttaaatgtttgaatttgaagtgtggttgattttgatgatgt |
35936993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 35936795 - 35936856
Alignment:
| Q |
1 |
gatttctaaatgtttgatggatactgttttctcatttctaaatgtttgaattcgaagtgtgg |
62 |
Q |
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| T |
35936795 |
gatttctaaatgtttgatggatactgttttctcatttctaaatgtttgaattcgaagtgtgg |
35936856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 35936833 - 35936872
Alignment:
| Q |
160 |
taaatgtttgaatttgaagtgtggttgattttgatgatgt |
199 |
Q |
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| T |
35936833 |
taaatgtttgaattcgaagtgtggttgattttgatgatgt |
35936872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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