View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0881_high_1 (Length: 491)
Name: NF0881_high_1
Description: NF0881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0881_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 11 - 422
Target Start/End: Original strand, 984782 - 985195
Alignment:
| Q |
11 |
cataggtaaattaaacttgag--cttgatagagaaaaaactcattagagttcatgttgattatttggtataaaatgtgagttgtgtaaataattttcatg |
108 |
Q |
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| T |
984782 |
cataggtaaattaaacttgagagcttgatagagaaaaaactcattagagttcatgttgattatttggtataagatgtgagttgtgtacataattttcatg |
984881 |
T |
|
| Q |
109 |
tttatagaactcaatttttacatacaaattgagaaactaacttctaactactttcctnnnnnnnttaatttctaaccactaacttactcaatatttctgg |
208 |
Q |
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| T |
984882 |
tttatagaactcaatttttacatacaaattgagaaactaacttctaactactttcctaaaaaaattaatttctaaccactaacttactcaatatttctgg |
984981 |
T |
|
| Q |
209 |
taacaacaacaatttataaccttagcaaccatagttatttgcatttgtaactactaaagagagtgaaacaactatggaaattagagacaacaaaaaccaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
984982 |
taacaacaacaatttataaccttagcaaccatagttatttgcatttgtaactactaaagagagtgaaacaactatggaaattagagacaacaaaaaccaa |
985081 |
T |
|
| Q |
309 |
tttggtcgccatatttggcatctctatttctttgcgctaattaannnnnnnctagtagcatgcgaactaggatgtagggtgtgtttgatctgttaaacag |
408 |
Q |
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| T |
985082 |
tttggtcgccatatttggcatctctatttctttgcgctaattaatttttttctagtagcatgcgaactaggatgtagggtgtgtttgatttattaaacag |
985181 |
T |
|
| Q |
409 |
taagtattagatag |
422 |
Q |
| |
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| T |
985182 |
taagtattagatag |
985195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 416
Target Start/End: Complemental strand, 32468099 - 32468067
Alignment:
| Q |
384 |
agggtgtgtttgatctgttaaacagtaagtatt |
416 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
32468099 |
agggtgtgtttgatctgttaaacagtaagtatt |
32468067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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