View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0881_low_1 (Length: 624)
Name: NF0881_low_1
Description: NF0881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0881_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 14 - 608
Target Start/End: Original strand, 51123431 - 51124032
Alignment:
| Q |
14 |
catcatcaagtacgaagaaatactaatacgttcatttagtttttgtcaaaatgctgcatattatatagttcaataataaatattttttcacaataataat |
113 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
51123431 |
catcaccaagtacgaagaaatactaatacgttcatttagtttttgtcaaaatgctgcatattatatagttcaataa---atattttttcacaataataat |
51123527 |
T |
|
| Q |
114 |
ccaagtgttattaagcaaacatggcctt----------gctttgtttggatcactgatcacatttactgtgtttttacctagcaattgaaatcaaccaaa |
203 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51123528 |
ccaagtgttattaagcaaacatggccttgcagttccttgctttgtttggatcactgatcacatttactgtgtttttacctagcaattgaaatcaaccaaa |
51123627 |
T |
|
| Q |
204 |
gcaatgcactgcatatttgctatatatgcctcatgtttaactactactgagcgcatacacaaagggttgaggttttgatggaatgttgatgcaacttatg |
303 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51123628 |
gcaatgcactgcatatttgctatacatacctcatgtttaactactactgagcgcatacacaaagggttgaggttttgatggaatgttgatgcaacttatg |
51123727 |
T |
|
| Q |
304 |
gaatagctgttaggctatgtatatatgattgttgaggtttctaaatatgcttttatagtcaaagaagaattgtttggttctgttctatatatgttaagaa |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51123728 |
gaatagctgttaggctatgtatatatgattgttgaggtttctaaatatgcttttatagtcaaagaagaattgtttggttctgttctatatatgttaagaa |
51123827 |
T |
|
| Q |
404 |
attttcggtggttatatataccacttggactatagaataagcaattgccttgaatagttgtttgctttatcaaggaatgagtagtcaacatgtatttgta |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51123828 |
attttcggtggttatatataccacttggactatagaataagcaattgccttgaatagttgtttgctttatcaaggaatgagtagtcaacatgtatttgta |
51123927 |
T |
|
| Q |
504 |
ttagagcctaacgccattaccaatatctccaagtgcgtatttttatactttggggactaaattaacggattttaatacgtaagatctaactcaattgatg |
603 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
51123928 |
ttagagcctaatgccattaccaatatctccaagtgcgtatttttatactttagggattaaattgacggattttaatacataagatctaactcaattgatg |
51124027 |
T |
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| Q |
604 |
atgtc |
608 |
Q |
| |
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||||| |
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| T |
51124028 |
atgtc |
51124032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 9e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 365 - 524
Target Start/End: Complemental strand, 32150139 - 32149981
Alignment:
| Q |
365 |
aagaagaattgtttggttctgttctatatatgttaagaaattttcggtggttatatataccacttggactatagaataagcaattgccttgaatagttgt |
464 |
Q |
| |
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||||||||||||||||| |||||||||| ||||| |||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
32150139 |
aagaagaattgtttggtcttgttctatat--gttaaattttttttggtggttatata--ccacttgggctatagaataagcaattgccttgaatagttgt |
32150044 |
T |
|
| Q |
465 |
ttgctttatcaaggaatgagtagtcaa---catgtatttgtattagagcctaacgccattacc |
524 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
32150043 |
ttgctttatcaaggaatgagtagtcaatagcatgtatttgtattagagcctaatgccattacc |
32149981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 322
Target Start/End: Complemental strand, 32150190 - 32150143
Alignment:
| Q |
275 |
gttttgatggaatgttgatgcaacttatggaatagctgttaggctatg |
322 |
Q |
| |
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|||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
32150190 |
gttttgatggaatgttgatgcaacttatggaagagatgttaggctatg |
32150143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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