View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0881_low_13 (Length: 369)
Name: NF0881_low_13
Description: NF0881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0881_low_13 |
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| [»] scaffold0092 (1 HSPs) |
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Alignment Details
Target: scaffold0092 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 88 - 311
Target Start/End: Complemental strand, 22616 - 22394
Alignment:
| Q |
88 |
catcatcatagtgatggtaaataaaatccctatataaaatgtaaatagtttgacctagaccaatcacatagtttcatagcaagaaatcctnnnnnnnnnn |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
22616 |
catcatcatagtgatggtaaataaaatccctatataaaatgtaaatagttggacctagaccaatcacatagtttcatagcaagaaatcctaaaaaaaaaa |
22517 |
T |
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| Q |
188 |
ggtaaataaacatcctctatttatcacctggttttcatggacctccttgttggatcaggaggttcccaaactttccatgaggatatagcttcctcttgta |
287 |
Q |
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||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22516 |
agtaaa-aaacatcctctatttttcacctggttttcatggacctccttgttcgatcaggaggttcccaaactttccatgaggatatagcttcctcttgta |
22418 |
T |
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| Q |
288 |
catgactttgaatttttgtctctg |
311 |
Q |
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|||||||||||||||||||||||| |
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| T |
22417 |
catgactttgaatttttgtctctg |
22394 |
T |
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