View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0881_low_14 (Length: 368)
Name: NF0881_low_14
Description: NF0881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0881_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 131 - 340
Target Start/End: Complemental strand, 32735942 - 32735733
Alignment:
| Q |
131 |
atttctattgtaaaagaaaaacatgacaacaatccttaaaccatgagagatacattttggccataattaaacaagtacaagtttgttatacatccatctc |
230 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32735942 |
atttttattgtaaaagaaaaacatgacaacaatccttaaaccatgagagatacattttggccataattaaacaagtacaagtttgttatacatccatctc |
32735843 |
T |
|
| Q |
231 |
tttttatttcaattgggattaacattgttcagtttgactaattacatgctcattatgcgatataggcaaggatcatgtctagatagtttggcctttggaa |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32735842 |
tttttatttcaattgggattaacattgttcagtttgactaattacatgctccttatgcgatataggcaaggatcatgtctagatagtttggcctttggaa |
32735743 |
T |
|
| Q |
331 |
ccttacacct |
340 |
Q |
| |
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|||||||||| |
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| T |
32735742 |
ccttacacct |
32735733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 32736018 - 32735934
Alignment:
| Q |
15 |
tatcatatcatatattccaccagcattcatcagccagatttattcccatattaccccttttcccaaacctacccccatttttatt |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
32736018 |
tatcatatcatatattccaccagcattcatcagccagatttattcccatattacccattttcccaaacctaaccccatttttatt |
32735934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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