View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0881_low_16 (Length: 350)

Name: NF0881_low_16
Description: NF0881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0881_low_16
NF0881_low_16
[»] chr7 (20 HSPs)
chr7 (32-273)||(22879538-22879779)
chr7 (146-325)||(22888147-22888326)
chr7 (142-330)||(22829875-22830063)
chr7 (142-330)||(22808464-22808652)
chr7 (146-330)||(22804180-22804364)
chr7 (146-325)||(22838901-22839080)
chr7 (142-285)||(22813916-22814059)
chr7 (146-285)||(22874817-22874956)
chr7 (142-285)||(22892842-22892985)
chr7 (32-144)||(22814102-22814214)
chr7 (32-144)||(22839127-22839239)
chr7 (32-144)||(22804411-22804523)
chr7 (32-144)||(22888373-22888485)
chr7 (32-144)||(22893028-22893140)
chr7 (32-144)||(22875003-22875115)
chr7 (146-285)||(22897158-22897297)
chr7 (32-144)||(22808695-22808807)
chr7 (32-138)||(22830112-22830218)
chr7 (32-130)||(22912754-22912852)
chr7 (32-143)||(22897345-22897456)
[»] chr1 (2 HSPs)
chr1 (142-330)||(21151682-21151870)
chr1 (32-144)||(21151527-21151639)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 32 - 273
Target Start/End: Complemental strand, 22879779 - 22879538
Alignment:
32 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 131  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22879779 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaaaaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 22879680  T
132 ctgaattcaatgcagatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctga 231  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
22879679 ctgaattcaatgcagatcctcacaaaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggcgactaaattttctga 22879580  T
232 tatattttcttttggtgcatttcttcttgaggttgtttgtgg 273  Q
    ||| ||||||||||||||||||||||||||||||| ||||||    
22879579 tatgttttcttttggtgcatttcttcttgaggttgcttgtgg 22879538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 146 - 325
Target Start/End: Complemental strand, 22888326 - 22888147
Alignment:
146 gatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttcttttg 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||| | ||||||||||    
22888326 gatcctcacacaactcatttggctggaactattggttatcttgctcctgaacatattagaagaggtaaggctactaaattttctgatgtgttttcttttg 22888227  T
246 gtgcatttcttcttgaggttgtttgtggtaggaggcctataggtcgtgtgggagacaacgagagtctaattctagttgat 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
22888226 gtgcatttcttcttgaggttgtttgtggtaggaggcctataggtcgtgtaggagacaatgagagtctaattctagttgat 22888147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 142 - 330
Target Start/End: Complemental strand, 22830063 - 22829875
Alignment:
142 tgcagatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttct 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||| | ||||||    
22830063 tgcagatcctcacacaactcatttggctggaactattggttatcttgctcctgaacatattagaacaggtaaggctacaaaattttctgatgtgttttct 22829964  T
242 tttggtgcatttcttcttgaggttgtttgtggtaggaggcctataggtcgtgtgggagacaacgagagtctaattctagttgatgatgt 330  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||||||||| ||||    
22829963 tttggtgcatttcttcttgaggttgtttgtggtaggaggcctctaggccgtgtaggagacaatgagagtctaattctagttgattatgt 22829875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 142 - 330
Target Start/End: Complemental strand, 22808652 - 22808464
Alignment:
142 tgcagatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttct 241  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||||| | ||||||    
22808652 tgcagatcctcacacaactcatttggttggaactattggttatcttgcccctgagcatattagaacaggtaaggctactaaattttctgatgtgttttct 22808553  T
242 tttggtgcatttcttcttgaggttgtttgtggtaggaggcctataggtcgtgtgggagacaacgagagtctaattctagttgatgatgt 330  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||| ||||    
22808552 tttggtgcatttcttcttgaggttgtttgtggtcggaggcctataggtcgtgtgggagaaaatgagagtctaattctagttgattatgt 22808464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 146 - 330
Target Start/End: Complemental strand, 22804364 - 22804180
Alignment:
146 gatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttcttttg 245  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||| | ||||||||||    
22804364 gatcctcacactactcatttggttggaacttttggttatcttgctcctgatcatattagaacaggtaaggctactaaattttctgatgtgttttcttttg 22804265  T
246 gtgcatttcttcttgaggttgtttgtggtaggaggcctataggtcgtgtgggagacaacgagagtctaattctagttgatgatgt 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| ||||||||||| ||||    
22804264 gtgcatttcttcttgaggttgtttgtggtaggaggcctataggtcgtgtaggagagaatgagagtctagttctagttgatcatgt 22804180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 146 - 325
Target Start/End: Complemental strand, 22839080 - 22838901
Alignment:
146 gatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttcttttg 245  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||| | ||||||||||    
22839080 gatcctcacactactcatttggttggaacttttggttatcttgctcctgatcatattagaacaggtaaggctactaaattttctgatgtgttttcttttg 22838981  T
246 gtgcatttcttcttgaggttgtttgtggtaggaggcctataggtcgtgtgggagacaacgagagtctaattctagttgat 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  | |||||||||||||||||||||    
22838980 gtgcatttcttcttgaggttgtttgtggtaggaggcctataggtcgtgtaggagaatatgagagtctaattctagttgat 22838901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 142 - 285
Target Start/End: Complemental strand, 22814059 - 22813916
Alignment:
142 tgcagatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttct 241  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
22814059 tgcagatcctcacacaactcatttggctggaacaattggttatcttgctcctgaacatattagaacaggtaaggccactaaattttctgatatgttttct 22813960  T
242 tttggtgcatttcttcttgaggttgtttgtggtaggaggcctat 285  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||    
22813959 tttggtgcatttcttcttgaggttgcttgtggtagaaggcctat 22813916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 146 - 285
Target Start/End: Complemental strand, 22874956 - 22874817
Alignment:
146 gatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttcttttg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||| ||||||||||||||| | ||||||||||    
22874956 gatcctcacacaactcatttggctggaactattggttatcttgctccggaacatattagaactggtaaggctactaaattttctgatgtgttttcttttg 22874857  T
246 gtgcatttcttcttgaggttgtttgtggtaggaggcctat 285  Q
    ||||||||||||||||||||| ||||||||| ||||||||    
22874856 gtgcatttcttcttgaggttgcttgtggtagaaggcctat 22874817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 142 - 285
Target Start/End: Complemental strand, 22892985 - 22892842
Alignment:
142 tgcagatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttct 241  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||| | ||||||    
22892985 tgcagatcatcacacgactcatttggctggaactattggttatcttgctccggaacatattagaacaggtaaggctactaaattttctgatgtgttttct 22892886  T
242 tttggtgcatttcttcttgaggttgtttgtggtaggaggcctat 285  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||    
22892885 tttggtgcatttcttcttgaggttgcttgtggtagaaggcctat 22892842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 22814214 - 22814102
Alignment:
32 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
22814214 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttattagatt 22814115  T
132 ctgaattcaatgc 144  Q
    ||||||| |||||    
22814114 ctgaatttaatgc 22814102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 22839239 - 22839127
Alignment:
32 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 131  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22839239 atcatcaaaggtgttgcttcaggtttggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 22839140  T
132 ctgaattcaatgc 144  Q
    ||||||| |||||    
22839139 ctgaatttaatgc 22839127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 22804523 - 22804411
Alignment:
32 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 131  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22804523 atcatcaaaggtgttgcttcagctgtggtttatcttcacgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 22804424  T
132 ctgaattcaatgc 144  Q
    ||||||| |||||    
22804423 ctgaatttaatgc 22804411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 22888485 - 22888373
Alignment:
32 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
22888485 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttattcatagagacataaaggctagtaatgtgttgttagatt 22888386  T
132 ctgaattcaatgc 144  Q
    ||| ||| |||||    
22888385 ctggatttaatgc 22888373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 22893140 - 22893028
Alignment:
32 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 131  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
22893140 atcatcaaaggtgttgcttcaggcgtggtttatcttcatgaagaatgggagaaagttgtaattcatagagacataaaagctagtaatgtgttgttagatt 22893041  T
132 ctgaattcaatgc 144  Q
    ||||||| |||||    
22893040 ctgaatttaatgc 22893028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 22875115 - 22875003
Alignment:
32 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 131  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||    
22875115 atcatcaaaggtgttgcttcaggtttggtttatctacatgaagaatgggaaaaagttgtgattcatagagacataaaagctagtaatgtgttgttagatt 22875016  T
132 ctgaattcaatgc 144  Q
    ||||||| |||||    
22875015 ctgaatttaatgc 22875003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 146 - 285
Target Start/End: Complemental strand, 22897297 - 22897158
Alignment:
146 gatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttcttttg 245  Q
    |||||||||||||||||||||| ||||||| | || ||||| || | |||||||| ||||||||||||||| ||||||||||||||| | ||||||||||    
22897297 gatcctcacacaactcatttggttggaactgtagggtatctagcacctgaacatactagaacaggtaaggctactaaattttctgatgtgttttcttttg 22897198  T
246 gtgcatttcttcttgaggttgtttgtggtaggaggcctat 285  Q
    ||||||||||||| ||||||| ||||||||| ||||||||    
22897197 gtgcatttcttctcgaggttgcttgtggtagaaggcctat 22897158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 22808807 - 22808695
Alignment:
32 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 131  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| || ||| |||||||||| ||||||||||||||||||||||    
22808807 atcatcaaaggtgttgcgtcaggtgtggtttatctacacgaagaatgggagaaagttgtaattcatcgagacataaaggctagtaatgtgttgttagatt 22808708  T
132 ctgaattcaatgc 144  Q
    ||||||| |||||    
22808707 ctgaatttaatgc 22808695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 22830218 - 22830112
Alignment:
32 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 131  Q
    |||||||||||| |||| ||||||||||||||||| || |||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||    
22830218 atcatcaaaggtattgcgtcaggtgtggtttatctacacgaagaatgggagaaagttgtgattcatagagacataaaggctagtaatgtgttgttagatt 22830119  T
132 ctgaatt 138  Q
    |||||||    
22830118 ctgaatt 22830112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 22912852 - 22912754
Alignment:
32 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagat 130  Q
    ||||| |||||||||||||| ||| || ||||| | ||||||||||||||  |||||||||| ||||||||||| |||||||||||||| || ||||||    
22912852 atcattaaaggtgttgcttctggtttgttttatttacatgaagaatgggaacaagttgttattcatagagacattaaagctagtaatgttttattagat 22912754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 22897456 - 22897345
Alignment:
32 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 131  Q
    |||||||||||||||||||  ||| || ||||||| || |||||||||||| | ||||| || |||||||||||||| ||||| |||||||| ||||||     
22897456 atcatcaaaggtgttgctttgggtttgttttatctacacgaagaatgggagcaggttgtgattcatagagacataaaggctagcaatgtgttattagatg 22897357  T
132 ctgaattcaatg 143  Q
     |||||| ||||    
22897356 gtgaattgaatg 22897345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 142 - 330
Target Start/End: Original strand, 21151682 - 21151870
Alignment:
142 tgcagatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttct 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||| ||||||| | ||||||    
21151682 tgcagatcctcacacaactcatttggctggaactattggttatcttgctccggaacatattagaacaggtaaggctactaaatcttctgatgtgttttct 21151781  T
242 tttggtgcatttcttcttgaggttgtttgtggtaggaggcctataggtcgtgtgggagacaacgagagtctaattctagttgatgatgt 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||    
21151782 tttggtgcatttcttcttgaggttgtttgtggtaggaggcctataggtcatgtcggagacaacgagagtctaattctagttgattatgt 21151870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 21151527 - 21151639
Alignment:
32 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 131  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
21151527 atcatcaaaggtgttgcttcaagtgtggtttatctacatgaagaatgggagaaagttgtaattcatagagacataaaagctagtaatgtgttgttagatt 21151626  T
132 ctgaattcaatgc 144  Q
    ||||||| |||||    
21151627 ctgaatttaatgc 21151639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 691 times since January 2019
Visitors: 6719