View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0881_low_17 (Length: 350)
Name: NF0881_low_17
Description: NF0881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0881_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 336
Target Start/End: Complemental strand, 8437588 - 8437272
Alignment:
| Q |
6 |
agatatatccttatcttttttgtttactggcaatatatttccttgagaacaaaactaaactgttacacgtttcagcatacgccctctgccctccacacac |
105 |
Q |
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| T |
8437588 |
agatatatccttatcttttttgtttactggcaatatatttccttgagaacaaaactaaactgttacacgtttcagcatacgccctctgccctccacacac |
8437489 |
T |
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| Q |
106 |
ttcactaagttataactaatgtaaaaagttannnnnnnngcttattatagtgtgtacatgtttatattttcattttgacaagatcaaacttaactagaat |
205 |
Q |
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| T |
8437488 |
ttcactaa-----------tgtaaaaagttatttttt--gcttattatagtgtgtacatgtttatattttcattttgacaagatcaaacttaactagaat |
8437402 |
T |
|
| Q |
206 |
tgtatcaatgcaaataattaagaggaaattaaaataagctagtgaataatccaagagctgaccatgaaaaaccatatttgtttaatattacttg----tc |
301 |
Q |
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||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8437401 |
tgtatcaatgcaaataa----gaggaaattaaaagaagctagtgactaatccaagagctgaccatgaaaaaccatatttgtttaatattacttacttttc |
8437306 |
T |
|
| Q |
302 |
gtcataatcttatggtatggcatttgacaaacctc |
336 |
Q |
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|| |||||||||||||||||||||||||||||||| |
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| T |
8437305 |
gt-ataatcttatggtatggcatttgacaaacctc |
8437272 |
T |
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