View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0881_low_20 (Length: 329)
Name: NF0881_low_20
Description: NF0881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0881_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 173 - 305
Target Start/End: Complemental strand, 25659485 - 25659353
Alignment:
| Q |
173 |
atatactatgataaagtggagaaaaatctatattattcaaaaaataaagaatatcacataatacattcttttttaaagaacattgaagaatacatattgc |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | |
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| T |
25659485 |
atatactatgataaagtggagaaaaatctatattattccaaaaataaagaatatcacataatacattattttttaaagaatattgaagaatacatatttc |
25659386 |
T |
|
| Q |
273 |
attcgattttcaatgataaattgttttttggag |
305 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |
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|
| T |
25659385 |
attcgattttcaatgataaattattttttggag |
25659353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 173 - 305
Target Start/End: Complemental strand, 25665890 - 25665758
Alignment:
| Q |
173 |
atatactatgataaagtggagaaaaatctatattattcaaaaaataaagaatatcacataatacattcttttttaaagaacattgaagaatacatattgc |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | |
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| T |
25665890 |
atatactatgataaagtggagaaaaatctatattattccaaaaataaagaatatcacataatacattattttttaaagaatattgaagaatacatatttc |
25665791 |
T |
|
| Q |
273 |
attcgattttcaatgataaattgttttttggag |
305 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |
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|
| T |
25665790 |
attcgattttcaatgataaattattttttggag |
25665758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 173 - 305
Target Start/End: Complemental strand, 25672295 - 25672163
Alignment:
| Q |
173 |
atatactatgataaagtggagaaaaatctatattattcaaaaaataaagaatatcacataatacattcttttttaaagaacattgaagaatacatattgc |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | |
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| T |
25672295 |
atatactatgataaagtggagaaaaatctatattattccaaaaataaagaatatcacataatacattattttttaaagaatattgaagaatacatatttc |
25672196 |
T |
|
| Q |
273 |
attcgattttcaatgataaattgttttttggag |
305 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
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|
| T |
25672195 |
attcgattttcaatgataaattattttttggag |
25672163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 163 - 305
Target Start/End: Complemental strand, 25678710 - 25678568
Alignment:
| Q |
163 |
agttttaatgatatactatgataaagtggagaaaaatctatattattcaaaaaataaagaatatcacataatacattcttttttaaagaacattgaagaa |
262 |
Q |
| |
|
||||| || |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
25678710 |
agtttcaaagatatattatgataaagtggagaaaaatctatattattccaaaaataaagaatatcacataatacattactttttaaagaatattgaagaa |
25678611 |
T |
|
| Q |
263 |
tacatattgcattcgattttcaatgataaattgttttttggag |
305 |
Q |
| |
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|||||||| ||||||||||||||||||||||| |||||||||| |
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|
| T |
25678610 |
tacatatttcattcgattttcaatgataaattattttttggag |
25678568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 25659604 - 25659488
Alignment:
| Q |
17 |
tttagaactgaatgtataaaatttggtaatgacaatcaacaatttgaaagtaatagtagtagataagcatgttattcataatttat-ggccaaggttctt |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||| || |||||||||| |
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|
| T |
25659604 |
tttagaactgaatgtagaaaatttggtaatgacaatcaacaatttgaaagtaata---gtagataagtatggtattcataatttataggtcaaggttctt |
25659508 |
T |
|
| Q |
116 |
cactgttttgagtttcaaag |
135 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
25659507 |
cactgttttgagtttcaaag |
25659488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 25666009 - 25665893
Alignment:
| Q |
17 |
tttagaactgaatgtataaaatttggtaatgacaatcaacaatttgaaagtaatagtagtagataagcatgttattcataatttat-ggccaaggttctt |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||| || |||||||||| |
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|
| T |
25666009 |
tttagaactgaatgtagaaaatttggtaatgacaatcaacaatttgaaagtaata---gtagataagtatggtattcataatttataggtcaaggttctt |
25665913 |
T |
|
| Q |
116 |
cactgttttgagtttcaaag |
135 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
25665912 |
cactgttttgagtttcaaag |
25665893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 25672414 - 25672298
Alignment:
| Q |
17 |
tttagaactgaatgtataaaatttggtaatgacaatcaacaatttgaaagtaatagtagtagataagcatgttattcataatttat-ggccaaggttctt |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||| || |||||||||| |
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|
| T |
25672414 |
tttagaactgaatgtagaaaatttggtaatgacaatcaacaatttgaaagtaata---gtagataagtatggtattcataatttataggtcaaggttctt |
25672318 |
T |
|
| Q |
116 |
cactgttttgagtttcaaag |
135 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
25672317 |
cactgttttgagtttcaaag |
25672298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 25678817 - 25678701
Alignment:
| Q |
17 |
tttagaactgaatgtataaaatttggtaatgacaatcaacaatttgaaagtaatagtagtagataagcatgttattcataatttat-ggccaaggttctt |
115 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||| || |||||||||| |
|
|
| T |
25678817 |
tttagaactcaatgtagaaaatttggtaatgacaatcaacaatttgaaagtaata---gtagataagcacggtattcataatttataggtcaaggttctt |
25678721 |
T |
|
| Q |
116 |
cactgttttgagtttcaaag |
135 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
25678720 |
cactgttttgagtttcaaag |
25678701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 25685342 - 25685257
Alignment:
| Q |
17 |
tttagaactgaatgtataaaatttggtaatgacaatcaacaatttgaaagtaatagtagtagataagcatgttattcataatttat |
102 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25685342 |
tttagaattgaatgtataaaatttggtaatgacaatcaacaatttgaaagtaatagtagtagataagcatgttattcataaattat |
25685257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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