View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0881_low_22 (Length: 316)

Name: NF0881_low_22
Description: NF0881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0881_low_22
NF0881_low_22
[»] chr3 (4 HSPs)
chr3 (92-236)||(17509885-17510029)
chr3 (92-220)||(42540613-42540740)
chr3 (92-236)||(32304683-32304827)
chr3 (92-174)||(34817830-34817912)
[»] chr1 (4 HSPs)
chr1 (92-236)||(49653168-49653312)
chr1 (92-216)||(35122699-35122823)
chr1 (92-236)||(47112594-47112738)
chr1 (92-236)||(36142615-36142761)
[»] chr6 (4 HSPs)
chr6 (95-236)||(16146578-16146720)
chr6 (92-236)||(27129343-27129488)
chr6 (92-236)||(20746036-20746178)
chr6 (92-236)||(12260898-12261046)
[»] chr7 (2 HSPs)
chr7 (92-236)||(30766146-30766291)
chr7 (92-236)||(17278901-17279048)
[»] chr2 (5 HSPs)
chr2 (92-236)||(19297981-19298126)
chr2 (96-236)||(20686130-20686271)
chr2 (92-236)||(28189948-28190093)
chr2 (92-236)||(8029418-8029565)
chr2 (92-236)||(40468498-40468647)
[»] chr5 (2 HSPs)
chr5 (92-236)||(23083040-23083185)
chr5 (92-236)||(6794195-6794340)
[»] chr4 (2 HSPs)
chr4 (92-236)||(9086745-9086892)
chr4 (92-236)||(40680955-40681102)
[»] chr8 (1 HSPs)
chr8 (92-236)||(13462607-13462755)
[»] scaffold0202 (1 HSPs)
scaffold0202 (92-174)||(21683-21765)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 92 - 236
Target Start/End: Original strand, 17509885 - 17510029
Alignment:
Q  92 catcatctcaaaatcaccaacaacactcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagtt 191  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17509885 catcatctcaaaaacaccaacaacactcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagtt 17509984  T
Q  192 atcccaattggatttagcaccaaagtcaccttcttgataattaat 236  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  17509985 atcccaattggatttagcaccaaagtcgccttcttgataattaat 17510029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 92 - 220
Target Start/End: Original strand, 42540613 - 42540740
Alignment:
Q  92 catcatctcaaaatcaccaacaacactcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagtt 191  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42540613 catcatctcaaaaacaccaacaacactcaatctacctcagaaaaa-ttagaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagtt 42540711  T
Q  192 atcccaattggatttagcaccaaagtcac 220  Q
    |||||||||||||||||||||||||||||    
T  42540712 atcccaattggatttagcaccaaagtcac 42540740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 92 - 236
Target Start/End: Original strand, 32304683 - 32304827
Alignment:
Q  92 catcatctcaaaatcaccaacaacactcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagtt 191  Q
    ||||||||||||| ||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32304683 catcatctcaaaaacaccaacaacattcaatctacctcagaataa-ttggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagtt 32304781  T
Q  192 atcccaattggatttagcaccaaagtcac-cttcttgataattaat 236  Q
    |||||||||||||||||||||||||||||  || ||||||||||||    
T  32304782 atcccaattggatttagcaccaaagtcactttttttgataattaat 32304827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 34817912 - 34817830
Alignment:
Q  92 catcatctcaaaatcaccaacaacactcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttggattcaat 174  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||    
T  34817912 catcatctcaaaaacaccaacaacactcaatctacctcagaaaaaattggaaatcggtgccgctcttcaaccttggattcaat 34817830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 49653312 - 49653168
Alignment:
Q  92 catcatctcaaaatcaccaacaacactcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagtt 191  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49653312 catcatctcacaaacaccaacaacactcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagtt 49653213  T
Q  192 atcccaattggatttagcaccaaagtcaccttcttgataattaat 236  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  49653212 atcccaattggatttagcaccaaagtcactttcttgataattaat 49653168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 92 - 216
Target Start/End: Complemental strand, 35122823 - 35122699
Alignment:
Q  92 catcatctcaaaatcaccaacaacactcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagtt 191  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  35122823 catcatctcaaaaacaccaacaacactcaatctacctcagaaaaaattggaaatcggtgtcgttcatcaaccttggattcaattgggtgttgtgctagtt 35122724  T
Q  192 atcccaattggatttagcaccaaag 216  Q
    |||||| ||||||||||||||||||    
T  35122723 atcccagttggatttagcaccaaag 35122699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 47112738 - 47112594
Alignment:
Q  92 catcatctcaaaatcaccaacaacactcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagtt 191  Q
    ||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  47112738 catcatctcaaaaacaccaacaacactcaatctacctcagaataa-ttggaaattggtgtcgttcttcaatcttgaattcaattgggtgttgtgctagtt 47112640  T
Q  192 atcccaattggatttagcaccaaagtcac-cttcttgataattaat 236  Q
    |||||||||||||||||||||||||||||  || ||||||||||||    
T  47112639 atcccaattggatttagcaccaaagtcactttttttgataattaat 47112594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 36142761 - 36142615
Alignment:
Q  92 catcatctcaaaatcaccaacaacactcaatctacctcagaaaaaa-ttggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagt 190  Q
    |||| ||||||||  |||||||||||||||||||||||| |||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36142761 catcttctcaaaaaaaccaacaacactcaatctacctcaaaaaaaaattgaaaatcggtgtcgttcttcaaccttggattcaattgggtgttgtgctagt 36142662  T
Q  191 tatcccaattggatttagcaccaaagtcac-cttcttgataattaat 236  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||    
T  36142661 tatcccaattggatttagcaccaaagtcacttttcttgataattaat 36142615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 95 - 236
Target Start/End: Complemental strand, 16146720 - 16146578
Alignment:
Q  95 catctcaaaatcaccaacaacactcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagttatc 194  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  16146720 catctcaaaaacaccaacaacactcaatctacctcagaaaaaattggaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatc 16146621  T
Q  195 ccaattggatttagcaccaaagtcac-cttcttgataattaat 236  Q
    |||||||| |||||||||||||||||  |||||||||||||||    
T  16146620 ccaattggctttagcaccaaagtcacttttcttgataattaat 16146578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 27129488 - 27129343
Alignment:
Q  92 catcatctcaaaatcaccaacaacactcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagtt 191  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27129488 catcatctcaaaaacaccaacaacactcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagtt 27129389  T
Q  192 atcccaattggatttagcaccaaagtcac-cttcttgataattaat 236  Q
    | || ||||||||||||||||||||||||  |||||||||||||||    
T  27129388 aaccaaattggatttagcaccaaagtcacttttcttgataattaat 27129343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 92 - 236
Target Start/End: Original strand, 20746036 - 20746178
Alignment:
Q  92 catcatctcaaaatcaccaacaacactcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagtt 191  Q
    ||||||||||||| |||||||   |||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  20746036 catcatctcaaaaacaccaac---actcaatctacctcagaacaaattggaaattggtgcccttcttcaaccttggattcaattgggtgttgtgctagtt 20746132  T
Q  192 atcccaattggatttagcaccaaagtcac-cttcttgataattaat 236  Q
    |||||||||||||||||||||||||||||  |||||||||||||||    
T  20746133 atcccaattggatttagcaccaaagtcacttttcttgataattaat 20746178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 92 - 236
Target Start/End: Original strand, 12260898 - 12261046
Alignment:
Q  92 catcatctcaaaatcaccaacaacactcaatctacctcagaaaa---aattggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgcta 188  Q
    |||||||||||||  |||||||||||||||||||||||||||||   |||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  12260898 catcatctcaaaaataccaacaacactcaatctacctcagaaaaaaaaattggaaattggtgctgttcttcaaccttggattcaattgggtgttgtgcta 12260997  T
Q  189 gttatcccaattggatttagcaccaaagtcac-cttcttgataattaat 236  Q
    |||| || ||||||||||||||||||||||||  |||||||||||||||    
T  12260998 gttaaccaaattggatttagcaccaaagtcacttttcttgataattaat 12261046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 30766291 - 30766146
Alignment:
Q  92 catcatctcaaaatcaccaacaacactcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagtt 191  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30766291 catcatctcaaaaacaccaacaacactcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagtt 30766192  T
Q  192 atcccaattggatttagcaccaaagtcac-cttcttgataattaat 236  Q
    | || ||||||||||||||||||||||||  |||||||||||||||    
T  30766191 aaccaaattggatttagcaccaaagtcacttttcttgataattaat 30766146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 17279048 - 17278901
Alignment:
Q  92 catcatctcaaaatcaccaacaacactcaatctacctcagaaaaaatt--ggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctag 189  Q
    ||||||||||||| ||||||||||||||||||||||||||||    ||  |||||||||||  |||||||||||||||||||||||||||||||||||||    
T  17279048 catcatctcaaaaacaccaacaacactcaatctacctcagaattttttttggaaattggtgctgttcttcaaccttggattcaattgggtgttgtgctag 17278949  T
Q  190 ttatcccaattggatttagcaccaaagtcac-cttcttgataattaat 236  Q
    ||| || ||||||||||||||||||||||||  |||||||||||||||    
T  17278948 ttaaccaaattggatttagcaccaaagtcacttttcttgataattaat 17278901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 92 - 236
Target Start/End: Original strand, 19297981 - 19298126
Alignment:
Q  92 catcatctcaaaatcaccaacaacactcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagtt 191  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  19297981 catcatctcaaaaacacctacaacactcaatctacctcagaaaaaattggaaattggtgcccttcttcaaccttggattcaattgggtgttgtgctagtt 19298080  T
Q  192 atcccaattggatttagcaccaaagtcac-cttcttgataattaat 236  Q
    |||| ||||||||||||||||||||||||  |||||||||||||||    
T  19298081 atcctaattggatttagcaccaaagtcacttttcttgataattaat 19298126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 96 - 236
Target Start/End: Complemental strand, 20686271 - 20686130
Alignment:
Q  96 atctcaaaatcaccaacaacactcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagttatcc 195  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||    
T  20686271 atctcaaaaacaccaacaacactcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttgaattcaattgggcattgtgctagttatcc 20686172  T
Q  196 caattggatttagcaccaaagtcac-cttcttgataattaat 236  Q
    |||||| ||||||||||||||||||  |||||||||||||||    
T  20686171 caattgaatttagcaccaaagtcacttttcttgataattaat 20686130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 28190093 - 28189948
Alignment:
Q  92 catcatctcaaaatcaccaacaacactcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagtt 191  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28190093 catcatctcaaaaacaccaacaacactcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagtt 28189994  T
Q  192 atcccaattggatttagcaccaaagtcac-cttcttgataattaat 236  Q
    | || ||||||||||||||||||| ||||  |||||||||||||||    
T  28189993 aaccaaattggatttagcaccaaaatcacttttcttgataattaat 28189948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 92 - 236
Target Start/End: Original strand, 8029418 - 8029565
Alignment:
Q  92 catcatctcaaaatcaccaacaacactcaatctacctcagaaaaaatt--ggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctag 189  Q
    ||||||||||||| ||||||||||||||||||||||||||||    ||  |||||||||||  |||||||||||||||||||||||||||||||||||||    
T  8029418 catcatctcaaaaacaccaacaacactcaatctacctcagaattttttttggaaattggtgctgttcttcaaccttggattcaattgggtgttgtgctag 8029517  T
Q  190 ttatcccaattggatttagcaccaaagtcac-cttcttgataattaat 236  Q
    ||| || ||||||||||||||||||||||||  |||||||||||||||    
T  8029518 ttaaccaaattggatttagcaccaaagtcacttttcttgataattaat 8029565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 92 - 236
Target Start/End: Original strand, 40468498 - 40468647
Alignment:
Q  92 catcatctcaaaatcaccaacaacactcaatctacctcag-aaaaaattggaaattggtgtcgttcttcaaccttggattcaattgggtgtt---gtgct 187  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||| |||| ||||||||||||||||||||||||||   |||||    
T  40468498 catcatctcaaaaacaccaacaacactcaatctacctcagaaaaaaattggaaaatggtgccgttattcaaccttggattcaattgggtgttgtggtgct 40468597  T
Q  188 agttatcccaattggatttagcaccaaagtcac-cttcttgataattaat 236  Q
    ||||| || ||||||||||||||||||| ||||  |||||||||||||||    
T  40468598 agttaaccaaattggatttagcaccaaaatcacttttcttgataattaat 40468647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 23083185 - 23083040
Alignment:
Q  92 catcatctcaaaatcaccaacaacactcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagtt 191  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  23083185 catcatctcaaaaacaccaacaacactcaatctacctcagaaaaaattggaaaatggtgtcgttcttcaaccttggattcaattgggtgttgtgctagtc 23083086  T
Q  192 atcccaattggatttagcaccaaagtc-accttcttgataattaat 236  Q
    | || |||||||||||||||||||||| |  |||||||||||||||    
T  23083085 aaccaaattggatttagcaccaaagtcaattttcttgataattaat 23083040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 92 - 236
Target Start/End: Original strand, 6794195 - 6794340
Alignment:
Q  92 catcatctcaaaatcaccaacaacactcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagtt 191  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6794195 catcatctcaaaaacaccaacaacactcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagtt 6794294  T
Q  192 atcccaattggatttagcaccaaagtcac-cttcttgataattaat 236  Q
    | || ||||||||||||||||||| ||||  ||||| |||||||||    
T  6794295 aaccaaattggatttagcaccaaaatcacttttcttaataattaat 6794340  T

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Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 92 - 236
Target Start/End: Original strand, 9086745 - 9086892
Alignment:
Q  92 catcatctcaaaatcaccaacaacactcaatctacctcag--aaaaaattggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctag 189  Q
    ||||||||||||| ||||||||||| ||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9086745 catcatctcaaaaacaccaacaacattcaatctacctcaggaaaaaaattggaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctag 9086844  T
Q  190 ttatcccaattggatttagcaccaaagtcac-cttcttgataattaat 236  Q
    ||| || ||||||||||||||||||||||||  |||||||||||||||    
T  9086845 ttaaccaaattggatttagcaccaaagtcacttttcttgataattaat 9086892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 40681102 - 40680955
Alignment:
Q  92 catcatctcaaaatcaccaacaacactcaatctacctcagaaaaaa--ttggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctag 189  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40681102 catcatctcaaaaacaccaacaacacttaatctacctcagaaaaaaaattggaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctag 40681003  T
Q  190 ttatcccaattggatttagcaccaaagtcac-cttcttgataattaat 236  Q
    ||| || ||||||||||||||||||||||||  |||||||||||||||    
T  40681002 ttaaccaaattggatttagcaccaaagtcacttttcttgataattaat 40680955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 13462755 - 13462607
Alignment:
Q  92 catcatctcaaaatcaccaacaacactcaatctacctcagaaaaaa---ttggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgcta 188  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||   |||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  13462755 catcatctcaaaaacaccaacaacactcaatctacctcagaaaaaaattttggaaattggtgatgttcttcaaccttggattcaattgggtgttgtgcta 13462656  T
Q  189 gttatcccaattggatttagcaccaaagtcac-cttcttgataattaat 236  Q
    |||| || ||||||||||||||||||||||||  |||||||||||||||    
T  13462655 gttaaccaaattggatttagcaccaaagtcacttttcttgataattaat 13462607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 21683 - 21765
Alignment:
Q  92 catcatctcaaaatcaccaacaacactcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttggattcaat 174  Q
    ||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| |||| || ||||||||||||||||||||    
T  21683 catcatctcaaaaacactaacaacactcaatctacctcataaaaaattggaaatcggtgccgctcttcaaccttggattcaat 21765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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