View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0881_low_24 (Length: 306)

Name: NF0881_low_24
Description: NF0881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0881_low_24
NF0881_low_24
[»] scaffold0114 (2 HSPs)
scaffold0114 (1-211)||(34952-35162)
scaffold0114 (240-293)||(34808-34860)
[»] scaffold0284 (2 HSPs)
scaffold0284 (1-211)||(2402-2612)
scaffold0284 (251-293)||(2708-2750)
[»] scaffold0211 (2 HSPs)
scaffold0211 (9-206)||(20027-20224)
scaffold0211 (210-293)||(20301-20383)
[»] chr5 (21 HSPs)
chr5 (1-211)||(9023279-9023489)
chr5 (5-200)||(27769810-27770004)
chr5 (210-293)||(9023124-9023206)
chr5 (5-200)||(28903664-28903860)
chr5 (5-200)||(28940059-28940255)
chr5 (9-133)||(8206232-8206357)
chr5 (10-207)||(11497891-11498089)
chr5 (10-207)||(11505247-11505445)
chr5 (10-207)||(11512641-11512839)
chr5 (10-207)||(11520017-11520215)
chr5 (10-207)||(11527425-11527623)
chr5 (10-207)||(11534831-11535029)
chr5 (85-138)||(26675123-26675175)
chr5 (85-138)||(26946731-26946783)
chr5 (12-131)||(917099-917219)
chr5 (91-138)||(14460086-14460133)
chr5 (8-130)||(23159070-23159193)
chr5 (23-76)||(14461768-14461822)
chr5 (85-138)||(27001235-27001288)
chr5 (80-132)||(296413-296465)
chr5 (62-138)||(7313980-7314056)
[»] chr4 (36 HSPs)
chr4 (1-211)||(312622-312832)
chr4 (1-211)||(6552448-6552658)
chr4 (1-162)||(6552897-6553058)
chr4 (19-200)||(38932689-38932870)
chr4 (2-200)||(48827963-48828161)
chr4 (17-211)||(26499322-26499519)
chr4 (60-208)||(47097347-47097495)
chr4 (8-210)||(51150881-51151082)
chr4 (8-200)||(45615656-45615850)
chr4 (8-200)||(13834368-13834561)
chr4 (8-152)||(38080856-38081001)
chr4 (10-206)||(56095063-56095259)
chr4 (98-200)||(7616903-7617005)
chr4 (210-293)||(312471-312552)
chr4 (8-138)||(8170895-8171026)
chr4 (46-138)||(11839848-11839940)
chr4 (8-175)||(32934038-32934205)
chr4 (210-292)||(6552296-6552376)
chr4 (8-133)||(17381489-17381615)
chr4 (53-130)||(8755906-8755983)
chr4 (8-128)||(46804961-46805081)
chr4 (85-138)||(48973337-48973390)
chr4 (19-73)||(13834508-13834563)
chr4 (8-74)||(46804796-46804863)
chr4 (19-138)||(39331100-39331219)
chr4 (91-130)||(4161825-4161864)
chr4 (23-133)||(7912534-7912645)
chr4 (85-144)||(31903370-31903429)
chr4 (98-133)||(36409659-36409694)
chr4 (98-133)||(36423825-36423860)
chr4 (3-68)||(7616782-7616848)
chr4 (56-138)||(24806664-24806746)
chr4 (80-133)||(9297465-9297518)
chr4 (17-73)||(45615652-45615709)
chr4 (8-68)||(46805794-46805855)
chr4 (17-123)||(1758349-1758454)
[»] chr8 (15 HSPs)
chr8 (1-211)||(36754602-36754812)
chr8 (1-96)||(41528575-41528669)
chr8 (10-175)||(7680907-7681073)
chr8 (2-198)||(1249150-1249347)
chr8 (5-208)||(33590138-33590340)
chr8 (8-176)||(41303046-41303216)
chr8 (53-126)||(21602122-21602195)
chr8 (45-128)||(6393861-6393944)
chr8 (210-293)||(41528704-41528786)
chr8 (8-143)||(21600443-21600579)
chr8 (63-138)||(3662413-3662488)
chr8 (80-133)||(33508621-33508674)
chr8 (218-293)||(36754888-36754962)
chr8 (98-144)||(42659935-42659981)
chr8 (12-124)||(42844877-42844990)
[»] chr1 (16 HSPs)
chr1 (4-211)||(49880091-49880297)
chr1 (4-185)||(45919788-45919969)
chr1 (2-208)||(9890556-9890758)
chr1 (1-200)||(40872580-40872776)
chr1 (17-208)||(27463771-27463963)
chr1 (5-200)||(16658111-16658307)
chr1 (98-211)||(31738321-31738433)
chr1 (17-152)||(47921876-47922011)
chr1 (47-200)||(8069009-8069161)
chr1 (80-200)||(52361954-52362074)
chr1 (80-138)||(6541118-6541176)
chr1 (5-74)||(51849552-51849622)
chr1 (91-131)||(33747858-33747898)
chr1 (98-138)||(34826996-34827036)
chr1 (210-267)||(49879921-49879977)
chr1 (85-133)||(38267350-38267398)
[»] chr2 (12 HSPs)
chr2 (1-211)||(31967403-31967613)
chr2 (2-208)||(41746362-41746568)
chr2 (8-133)||(40124305-40124431)
chr2 (45-200)||(7165643-7165798)
chr2 (61-200)||(17742516-17742654)
chr2 (5-154)||(9470649-9470797)
chr2 (2-76)||(23077848-23077922)
chr2 (147-200)||(9471792-9471845)
chr2 (45-130)||(33260990-33261075)
chr2 (61-133)||(15301526-15301598)
chr2 (98-138)||(12676513-12676553)
chr2 (85-133)||(15816894-15816942)
[»] chr3 (19 HSPs)
chr3 (39-211)||(50239800-50239970)
chr3 (5-200)||(7672391-7672582)
chr3 (2-206)||(43838486-43838701)
chr3 (5-133)||(30006165-30006293)
chr3 (210-293)||(50239649-50239731)
chr3 (44-127)||(14984484-14984567)
chr3 (85-138)||(30843658-30843711)
chr3 (3-138)||(23195656-23195792)
chr3 (87-125)||(3941666-3941704)
chr3 (85-133)||(26499839-26499887)
chr3 (8-74)||(22235228-22235295)
chr3 (60-138)||(34979110-34979188)
chr3 (85-126)||(12832219-12832260)
chr3 (44-133)||(21568379-21568468)
chr3 (90-139)||(37852904-37852953)
chr3 (98-175)||(41897973-41898049)
chr3 (85-133)||(14194862-14194910)
chr3 (85-133)||(39336722-39336770)
chr3 (80-136)||(53705888-53705944)
[»] chr6 (16 HSPs)
chr6 (5-208)||(21237203-21237406)
chr6 (4-208)||(6524890-6525088)
chr6 (17-198)||(26293425-26293605)
chr6 (18-133)||(9307403-9307518)
chr6 (4-68)||(14549249-14549313)
chr6 (17-173)||(17848727-17848884)
chr6 (8-116)||(20565728-20565837)
chr6 (8-133)||(10067660-10067786)
chr6 (64-138)||(16431591-16431665)
chr6 (6-57)||(12291646-12291698)
chr6 (59-130)||(21021035-21021106)
chr6 (95-138)||(29927657-29927700)
chr6 (45-143)||(25085014-25085112)
chr6 (35-124)||(23887562-23887649)
chr6 (85-138)||(31142035-31142088)
chr6 (64-124)||(18129947-18130007)
[»] scaffold0252 (1 HSPs)
scaffold0252 (6-206)||(17129-17327)
[»] chr7 (15 HSPs)
chr7 (60-173)||(5197982-5198095)
chr7 (17-200)||(8929505-8929689)
chr7 (17-208)||(25689001-25689190)
chr7 (35-133)||(32996306-32996404)
chr7 (8-190)||(18942778-18942962)
chr7 (60-133)||(5362338-5362411)
chr7 (8-133)||(34703670-34703795)
chr7 (85-132)||(1344462-1344509)
chr7 (82-133)||(3116911-3116962)
chr7 (85-187)||(30839838-30839940)
chr7 (17-139)||(40077598-40077720)
chr7 (8-200)||(38838507-38838698)
chr7 (35-138)||(40355004-40355107)
chr7 (61-143)||(8062786-8062868)
chr7 (80-133)||(39608429-39608482)
[»] scaffold0045 (1 HSPs)
scaffold0045 (59-130)||(20628-20699)


Alignment Details
Target: scaffold0114 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 35162 - 34952
Alignment:
Q  1 aggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  35162 aggctaaaatagtccatcaatgtattaaaattttaaattgtctctggttgtacacttcattagtcaaaatagtccctaacattcaaatacttcattgata 35063  T
Q  101 ttgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaataca 200  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35062 ttgtcatattagtccttcaatatacttatttattatcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaattttaataca 34963  T
Q  201 gtgagagatta 211  Q
     ||||||||||    
T  34962 ctgagagatta 34952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 34860 - 34808
Alignment:
Q  240 catagcccttaacatagatccgcccctgatttcatactaagtgaaatttttact 293  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||| |||||||    
T  34860 catagccct-aacatagatccgcccctgatttcatacaaagtgaaacttttact 34808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 2402 - 2612
Alignment:
Q  1 aggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgata 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  2402 aggctaaaatagtccatcaatctattaaaattttaaattgtctccgattgtacacttcattagtcaaaatagtccctaacattcaaatacttcattgata 2501  T
Q  101 ttgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaataca 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2502 ttgtcatattagtccttcaatatacttatttattgtcacttcagggattattatgactaacaaagtacaaaatcatggattattttagaattttaataca 2601  T
Q  201 gtgagagatta 211  Q
     ||||||||||    
T  2602 ctgagagatta 2612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 251 - 293
Target Start/End: Original strand, 2708 - 2750
Alignment:
Q  251 acatagatccgcccctgatttcatactaagtgaaatttttact 293  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  2708 acatagatccgcccctgatttcatacaaagtgaaatttttact 2750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 20027 - 20224
Alignment:
Q  9 atagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcata 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||    
T  20027 atagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtctctaacattcaaatacttcattgatattgtcata 20126  T
Q  109 ttagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaatacagtgaga 206  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  20127 ttagtccttcaatatacttatttattgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaattttaatacactgaga 20224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 20301 - 20383
Alignment:
Q  210 tagggaagggcatgtggggctaaagcctcgcatagcccttaacatagatccgcccctgatttcatactaagtgaaatttttact 293  Q
    |||||||||||||||||||||  |||| | ||||||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  20301 tagggaagggcatgtggggcttgagccccacatagccct-aacatagatccgcccctgatttcatataaagtgaaatttttact 20383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 171; Significance: 8e-92; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 9023489 - 9023279
Alignment:
Q  1 aggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgata 100  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||    
T  9023489 aggctaagatagtctatcaatgtattaaaattttaaattgtctctgattgtacactttattagtcaaaatagtccctaacattcaaatacttcattgata 9023390  T
Q  101 ttgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaataca 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  9023389 ttgtcatattagtccttcaatatacttatttattgtcacttcagggactattataactaacaaagtacaaaatcatggattattttagaagtgtaataca 9023290  T
Q  201 gtgagagatta 211  Q
     || |||||||    
T  9023289 ctgtgagatta 9023279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 27769810 - 27770004
Alignment:
Q  5 taaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgt 104  Q
    ||||||||||| ||||||||| |||| |||||||||| | ||||| |||||||| ||||||||  ||||| ||| |||| ||||| || ||| |||||||    
T  27769810 taaaatagtccctcaatgtataaaaaatttaaattgtttttgatt-tacacttcgttagtcaagatagtcactaacattaaaatattttattaatattgt 27769908  T
Q  105 catattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaataca 200  Q
    |||||||   |||||||||||||| ||||  ||||||||  ||||||||||||||| |||||||||||||||||| |||||||||| |||||||||    
T  27769909 catattaactcttcaatatacttacttattttcacttcaaagactattatgactaaaaaagtacaaaatcatggactattttagaattttaataca 27770004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 210 - 293
Target Start/End: Complemental strand, 9023206 - 9023124
Alignment:
Q  210 tagggaagggcatgtggggctaaagcctcgcatagcccttaacatagatccgcccctgatttcatactaagtgaaatttttact 293  Q
    ||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  9023206 tagggaagggcatgtggggctaaagccccacatagccct-aacatagatccgcccctgatttcatacaaagtgaaatttttact 9023124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 28903664 - 28903860
Alignment:
Q  5 taaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgt 104  Q
    ||||||||||| | ||| ||| ||||  ||||||||||||| |||||||| |||  | |||||| ||||  ||| |||| |||||||||||| ||||  |    
T  28903664 taaaatagtccctaaatatataaaaaaattaaattgtctctaattgtacatttcgatggtcaaaatagtttctaacattaaaatacttcattaatatatt 28903763  T
Q  105 catattagtccttca-atatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaataca 200  Q
    ||||| |  ||||   ||||||||| ||||  |||||||| | ||||||||||||||||||||||||||||| ||| |||||||||| |||||||||    
T  28903764 catatcaacccttttgatatacttacttattatcacttcatgaactattatgactaacaaagtacaaaatcacggactattttagaattttaataca 28903860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 28940059 - 28940255
Alignment:
Q  5 taaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgt 104  Q
    ||||||||||| | ||| ||| ||||  ||||||||||||| |||||||| |||  | |||||| ||||  ||| |||| |||||||||||| ||||  |    
T  28940059 taaaatagtccctaaatatataaaaaaattaaattgtctctaattgtacatttcgatggtcaaaatagtttctaacattaaaatacttcattaatatatt 28940158  T
Q  105 catattagtccttca-atatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaataca 200  Q
    ||||| |  ||||   ||||||||| ||||  |||||||| | ||||||||||||||||||||||||||||| ||| |||||||||| |||||||||    
T  28940159 catatcaacccttttgatatacttacttattatcacttcatgaactattatgactaacaaagtacaaaatcacggactattttagaattttaataca 28940255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 8206357 - 8206232
Alignment:
Q  9 atagtccatcaatgtattaaaatttta-aattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcat 107  Q
    ||||||| | |||||||  |||||||| ||| ||| |||| ||| |||||||||||||||| |||||| |  ||   ||||| |||||| ||||||||||    
T  8206357 atagtcctttaatgtatcgaaattttataatagtccctgaatgtgcacttcattagtcaaaatagtccttgacaacaaaataattcattaatattgtcat 8206258  T
Q  108 attagtccttcaatatacttatttat 133  Q
    |||| |||||||||||||||| ||||    
T  8206257 attaatccttcaatatacttacttat 8206232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 11498089 - 11497891
Alignment:
Q  10 tagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcata 108  Q
    |||||| ||||||||| ||||||||||| | || | ||||| | |||||   |||||||  ||||||||| |||| ||||| ||  || |||||||||||    
T  11498089 tagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtcaacatagtccctaacattaaaataatttgttaatattgtcata 11497990  T
Q  109 ttagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaatacagtgagag 207  Q
    ||| || || |||||||||| |||| ||||||||||||  | ||  ||||||||| || |||||| |  |||||||| |  | ||||||||| ||||||    
T  11497989 ttaatcttttaatatacttacttattgtcacttcagggggtgtttcgactaacaatgtgcaaaattagagattatttaaagaatttaatacattgagag 11497891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 11505445 - 11505247
Alignment:
Q  10 tagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcata 108  Q
    |||||| ||||||||| ||||||||||| | || | ||||| | |||||   |||||||  ||||||||| |||| ||||| ||  || |||||||| ||    
T  11505445 tagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtcaacatagtccctaacattaaaataatttgttaatattgtcgta 11505346  T
Q  109 ttagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaatacagtgagag 207  Q
    ||| || || |||||||||| |||| ||||||||||||  ||||  ||||||||| || |||||| |  |||||||| |  | ||||||||| ||||||    
T  11505345 ttaatcttttaatatacttacttattgtcacttcagggggtatttcgactaacaatgtgcaaaattagagattatttaaagaatttaatacattgagag 11505247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 11512839 - 11512641
Alignment:
Q  10 tagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcata 108  Q
    |||||| ||||||||| ||||||||||| | || | ||||| | |||||   |||||||  ||||||||| |||| ||||| ||  || |||||||| ||    
T  11512839 tagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtcaacatagtccctaacattaaaataatttgttaatattgtcgta 11512740  T
Q  109 ttagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaatacagtgagag 207  Q
    ||| || || |||||||||| |||| ||||||||||||  ||||  ||||||||| || |||||| |  |||||||| |  | ||||||||| ||||||    
T  11512739 ttaatcttttaatatacttacttattgtcacttcagggggtatttcgactaacaatgtgcaaaattagagattatttaaagaatttaatacattgagag 11512641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 11520215 - 11520017
Alignment:
Q  10 tagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcata 108  Q
    |||||| ||||||||| ||||||||||| | || | ||||| | |||||   |||||||  ||||||||| |||| ||||| ||  || |||||||| ||    
T  11520215 tagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtcaacatagtccctaacattaaaataatttgttaatattgtcgta 11520116  T
Q  109 ttagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaatacagtgagag 207  Q
    ||| || || |||||||||| |||| ||||||||||||  ||||  ||||||||| || |||||| |  |||||||| |  | ||||||||| ||||||    
T  11520115 ttaatcttttaatatacttacttattgtcacttcagggggtatttcgactaacaatgtgcaaaattagagattatttaaagaatttaatacattgagag 11520017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 11527623 - 11527425
Alignment:
Q  10 tagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcata 108  Q
    |||||| ||||||||| ||||||||||| | || | ||||| | |||||   |||||||  ||||||||| |||| ||||| ||  || |||||||| ||    
T  11527623 tagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtcaacatagtccctaacattaaaataatttgttaatattgtcgta 11527524  T
Q  109 ttagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaatacagtgagag 207  Q
    ||| || || |||||||||| |||| ||||||||||||  ||||  ||||||||| || |||||| |  |||||||| |  | ||||||||| ||||||    
T  11527523 ttaatcttttaatatacttacttattgtcacttcagggggtatttcgactaacaatgtgcaaaattagagattatttaaagaatttaatacattgagag 11527425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 11535029 - 11534831
Alignment:
Q  10 tagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcata 108  Q
    |||||| ||||||||| ||||||||||| | || | ||||| | |||||   |||||||  ||||| ||| |||| ||||| ||  || |||||||||||    
T  11535029 tagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtcaacatagtctctaacattaaaataatttgttaatattgtcata 11534930  T
Q  109 ttagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaatacagtgagag 207  Q
    ||| || || |||||||||| |||| |||||||||||   ||||  ||||||||| || |||||| |  |||||||| |  | ||||||||| ||||||    
T  11534929 ttaatcttttaatatacttacttattgtcacttcaggcggtatttcgactaacaatgtgcaaaattagagattatttaaagaatttaatacattgagag 11534831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 26675123 - 26675175
Alignment:
Q  85 aaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 138  Q
    ||||| |||||| |||||||||||| ||||||||||||||||||||||| ||||    
T  26675123 aaatatttcattaatattgtcatat-agtccttcaatatacttatttattgtca 26675175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 26946731 - 26946783
Alignment:
Q  85 aaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 138  Q
    ||||| |||||| |||||||||||| ||||||||||||||||||||||| ||||    
T  26946731 aaatatttcattaatattgtcatat-agtccttcaatatacttatttattgtca 26946783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 917219 - 917099
Alignment:
Q  12 gtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatatt 110  Q
    |||| |||||||||  |||||||||| | |||| ||||||||||||| |||  ||||| ||||| ||  || | ||||| ||  || |||||||||||||    
T  917219 gtccctcaatgtatcgaaattttaaaatagtctttgattgtacactttatttatcaaaatagtctctcacaataaaatattttgttaatattgtcatatt 917120  T
Q  111 agtccttcaatatacttattt 131  Q
    |||| ||||||||| ||||||    
T  917119 agtcattcaatatatttattt 917099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 14460133 - 14460086
Alignment:
Q  91 ttcattgatattgtcatattagtccttcaatatacttatttatcgtca 138  Q
    |||| ||||||||||||||||||||||||||||| ||| |||| ||||    
T  14460133 ttcactgatattgtcatattagtccttcaatatatttacttattgtca 14460086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 23159070 - 23159193
Alignment:
Q  8 aatagtccatcaatgtattaaaatttt-aaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtca 106  Q
    |||||||||||||||||| |||||||| |||| || | ||||||| || ||| ||||| ||| ||||||||    || ||||  |||||| |||||  ||    
T  23159070 aatagtccatcaatgtatcaaaattttaaaatagtatttgattgtgcatttcgttagtaaaaatagtccctgatgttgaaatgtttcattaatattaaca 23159169  T
Q  107 tattagtccttcaatatacttatt 130  Q
    |||| |||||||||| ||||||||    
T  23159170 tatttgtccttcaatttacttatt 23159193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 14461822 - 14461768
Alignment:
Q  23 tattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtccc 76  Q
    |||| |||||||||| | ||||||||||||||||||| ||||||||| |||||||    
T  14461822 tattcaaattttaaaatagtctctgattgtacacttcgttagtcaaaatagtccc 14461768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 27001235 - 27001288
Alignment:
Q  85 aaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 138  Q
    |||||||||||| ||||||||||||||  || |||||||||||| |||| ||||    
T  27001235 aaatacttcattaatattgtcatattaccccgtcaatatacttacttattgtca 27001288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 296413 - 296465
Alignment:
Q  80 cattcaaatacttcattgatattgtcatattagtccttcaatatacttattta 132  Q
    |||| ||||| |||||| |||||||| ||||||  ||||||||||||||||||    
T  296413 cattaaaatatttcattaatattgtcgtattagatcttcaatatacttattta 296465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 7313980 - 7314056
Alignment:
Q  62 agtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 138  Q
    ||||||| ||||||||   ||| ||||| ||| || ||||||||||||| |||| | ||||||||||||||| ||||    
T  7313980 agtcaaaatagtccctcatatttaaatatttcgttaatattgtcatattggtcccttaatatacttatttattgtca 7314056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 8e-92; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 312832 - 312622
Alignment:
Q  1 aggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  312832 aggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgcacacttcattagtcaaaatagtccctaacattcaaatacttcattgata 312733  T
Q  101 ttgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaataca 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| ||||||||| || |||||||||    
T  312732 ttgtcatattagtccttcaatatacttatttattgtcacttcagggattattatgactaataaagtacaaaatcatgtattattttataattttaataca 312633  T
Q  201 gtgagagatta 211  Q
     ||||||||||    
T  312632 ctgagagatta 312622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 6552658 - 6552448
Alignment:
Q  1 aggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgata 100  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  6552658 aggctaaaatagtccatcaatgtattaaagatttaaattgtctctgattgtacacttcattagtcaaaatagtccctaacattcaaatacttcattgata 6552559  T
Q  101 ttgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaataca 200  Q
    |||||| |||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6552558 ttgtcacattagtccttcaatatacttatttattgtcacttcaaggcctattatgactaacaaagtacaaaatcatggattattttagaattttaataca 6552459  T
Q  201 gtgagagatta 211  Q
     ||||||||||    
T  6552458 ctgagagatta 6552448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 6553058 - 6552897
Alignment:
Q  1 aggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||    
T  6553058 aggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtctctaacattcaaatacttcattgata 6552959  T
Q  101 ttgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaaca 162  Q
    |||||  |||||||||||||||||||||||||| ||||||||| || |||||||||||||||    
T  6552958 ttgtctcattagtccttcaatatacttatttattgtcacttcaaggcctattatgactaaca 6552897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 38932870 - 38932689
Alignment:
Q  19 aatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttc 118  Q
    ||||||| |||||||||||||||||  ||||||||| ||  ||||||||| ||||| ||| |||| ||||| |||||| |||||||||||||||||||||    
T  38932870 aatgtatcaaaattttaaattgtcttcgattgtacattttgttagtcaaaatagtctctaacattaaaatatttcattaatattgtcatattagtccttc 38932771  T
Q  119 aatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaataca 200  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||| ||||||| || |||||||||    
T  38932770 aatatacttatttattgtcacttcagagactattatgactaacaatgtacaaaatcatggactattttaaaattttaataca 38932689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 2 - 200
Target Start/End: Complemental strand, 48828161 - 48827963
Alignment:
Q  2 ggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatat 101  Q
    ||||||||||| || |||||||||  ||||||| ||||| || |||||||| ||||| ||||| ||| |||||||||  ||  |||||| ||||| ||||    
T  48828161 ggctaaaatagaccctcaatgtatcgaaattttcaattgcctttgattgtatacttcgttagttaaaatagtccctaatataaaaatacgtcattaatat 48828062  T
Q  102 tgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaataca 200  Q
    ||||||||||  ||||||||||||||| |||| ||||||||||||||||||| |||||| |||||||||||||| ||| ||||||| || || ||||||    
T  48828061 tgtcatattaacccttcaatatacttacttattgtcacttcagggactattacgactaataaagtacaaaatcagggactattttaaaatttaaataca 48827963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 26499519 - 26499322
Alignment:
Q  17 tcaatgtattaaaattttaaattgtctctgattg---tacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagt 113  Q
    ||||||||| |||||| ||||||||||| || |    || ||||| ||||||||| |||||| || |||| |||||||||||| ||||||||||||||||    
T  26499519 tcaatgtatcaaaattgtaaattgtctcagactactatagacttcgttagtcaaaatagtccgtaacattaaaatacttcattaatattgtcatattagt 26499420  T
Q  114 ccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaatacagtgagagatta 211  Q
    | ||||||||||||| | ||  ||| |||| |  ||||| |||||||||||||| ||||||||  |||||||||||| ||||||||| | ||||||||    
T  26499419 cattcaatatacttactaattatcatttcatgagctattttgactaacaaagtataaaatcatttattattttagaattttaatacattaagagatta 26499322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 60 - 208
Target Start/End: Complemental strand, 47097495 - 47097347
Alignment:
Q  60 ttagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgacta 159  Q
    ||||||||| |||||  || || | |||||||| ||| |||||||||||||||||||| ||||||||||||||| |||| || || ||||  |||||||     
T  47097495 ttagtcaaaatagtctttaacactaaaatactttattaatattgtcatattagtcctttaatatacttatttattgtcagtttagagactgctatgactt 47097396  T
Q  160 acaaagtacaaaatcatggattattttagaagtttaatacagtgagaga 208  Q
    |||||||||||||||||| ||||||||| || ||||||||| |||||||    
T  47097395 acaaagtacaaaatcatgaattattttaaaattttaatacattgagaga 47097347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 51150881 - 51151082
Alignment:
Q  8 aatagtccatcaatgtattaaaattttaaattgtctc-tgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtca 106  Q
    ||||| |||||||||||| ||||||||||| |   || ||||||| || ||  ||||| ||| ||||||||| |||| ||||| ||  || |||||||||    
T  51150881 aatagaccatcaatgtatcaaaattttaaaatagttcgtgattgtgcattttgttagtgaaaatagtccctaacattaaaatattttgttaatattgtca 51150980  T
Q  107 tattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaatacagtgaga 206  Q
    ||||||| |||||||||||||| |||| ||||||| |||||||||| |||| |||| |||  |||||||  || ||||||| || ||||||||| |||||    
T  51150981 tattagtacttcaatatacttacttattgtcactt-agggactattttgaccaacagagt-gaaaatcagagactattttaaaattttaatacattgaga 51151078  T
Q  207 gatt 210  Q
    ||||    
T  51151079 gatt 51151082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 45615850 - 45615656
Alignment:
Q  8 aatagtccatcaatgtattaaaattttaaattgtctctgattgta--cacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtc 105  Q
    |||||||| ||||||| |  ||||||||||| |||  |||||||   |||||  ||||||||| ||||| |||  ||| ||||| ||  || ||||||||    
T  45615850 aatagtccctcaatgtttcgaaattttaaatagtccttgattgtgtgcactttgttagtcaaaatagtctctaatattaaaataatttgttaatattgtc 45615751  T
Q  106 atattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaataca 200  Q
    || |||||||||||||||||||| |||| |||||||||   |||||| ||||||| ||||| ||||||||  || ||||||| || |||||||||    
T  45615750 attttagtccttcaatatacttacttattgtcacttcaaaaactattttgactaataaagtgcaaaatcagagactattttaaaattttaataca 45615656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 13834368 - 13834561
Alignment:
Q  8 aatagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtca 106  Q
    |||||||| ||||| ||| ||||||||||| | |||  ||||||| |||||  ||||||||| |||||  || |||| ||||| ||  || |||||||||    
T  13834368 aatagtccctcaatttatcaaaattttaaaatagtccttgattgtgcactttgttagtcaaaatagtctttaacattaaaataatttgttaatattgtca 13834467  T
Q  107 tattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaataca 200  Q
    |||||||||||||||||||||| |||| ||||||| |   |||||| |||||||  ||||  |||||||  || ||||||| || |||||||||    
T  13834468 tattagtccttcaatatacttacttattgtcactttaaaaactattttgactaatgaagtgtaaaatcagagactattttaaaattttaataca 13834561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 38081001 - 38080856
Alignment:
Q  8 aatagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtca 106  Q
    |||||||||||||||||| ||||||||||| | ||||  |||| | || ||| ||||||||| ||||   || |||| ||||||||  || |||| ||||    
T  38081001 aatagtccatcaatgtatcaaaattttaaaatagtctacgattatgcatttcgttagtcaaaatagtttgtaacattaaaatactttgttaatatagtca 38080902  T
Q  107 tattagtccttcaatatacttatttatcgtcacttcagggactatt 152  Q
    ||||||| ||||||||||||||||||| |||||||| | |||||||    
T  38080901 tattagtacttcaatatacttatttattgtcacttccgagactatt 38080856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 56095063 - 56095259
Alignment:
Q  10 tagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcata 108  Q
    |||||| ||||||||| ||||||||||| | || | ||||| | |||||   |||||||  ||||||||| |||| ||||| ||  || |||||||||||    
T  56095063 tagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtcaacatagtccctaacattaaaataatttgttaatattgtcata 56095162  T
Q  109 ttagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaatacagtgaga 206  Q
    |||||| || |||||||||| |||| |||||||||  | ||||| ||||||||||||| ||||||||  ||  |||||| || ||||||||| |||||    
T  56095163 ttagtcttttaatatacttacttattgtcacttca-agcctattttgactaacaaagtgcaaaatcagagacaattttaaaattttaatacaatgaga 56095259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 7616903 - 7617005
Alignment:
Q  98 atattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaat 197  Q
    ||||| ||||||||||| |||||||||||||||||| |||| || | |||||||| ||||||||||||| ||||||||   | ||||||| || ||||||    
T  7616903 atattatcatattagtcattcaatatacttatttattgtcatttaatggactattttgactaacaaagtgcaaaatcaaaaactattttaaaattttaat 7617002  T
Q  198 aca 200  Q
    |||    
T  7617003 aca 7617005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 293
Target Start/End: Complemental strand, 312552 - 312471
Alignment:
Q  210 tagggaagggcatgtggggctaaagcctcgcatagcccttaacatagatccgcccctgatttcatactaagtgaaatttttact 293  Q
    |||||||||||||||||||||  |||| | |||||||  |||||||||||| ||||| ||||||||| ||||||||||||||||    
T  312552 tagggaagggcatgtggggctttagccccacatagcc--taacatagatccacccctcatttcatacaaagtgaaatttttact 312471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 8171026 - 8170895
Alignment:
Q  8 aatagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtca 106  Q
    |||||||| ||||||||| ||||||| ||| | |||||||||| | || ||| ||||||||| || || |||  ||| ||||  |||||| |||||||||    
T  8171026 aatagtccctcaatgtataaaaatttcaaaatagtctctgattttgcaattcgttagtcaaaataatctctaatattaaaatgtttcattaatattgtca 8170927  T
Q  107 tattagtccttcaatatacttatttatcgtca 138  Q
    ||||||| |||||||||||||| |||| ||||    
T  8170926 tattagtacttcaatatacttacttattgtca 8170895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 138
Target Start/End: Original strand, 11839848 - 11839940
Alignment:
Q  46 gattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 138  Q
    |||||| ||| || ||||||||| |||||| |  |||| ||||||||| || ||||||||||||||||||||||||| ||||| |||| ||||    
T  11839848 gattgtgcacctcgttagtcaaaatagtccttgacattaaaatacttcgttaatattgtcatattagtccttcaatacacttacttattgtca 11839940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 32934205 - 32934038
Alignment:
Q  8 aatagtccatcaatgtattaaaatttt-aaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtca 106  Q
    |||||||| ||||||||| |||||||| |||| || | ||||||| |||||   |||||||| ||||  ||| |||| ||||| ||  || |||||||||    
T  32934205 aatagtccctcaatgtatcaaaattttaaaatagtttttgattgtgcactttgctagtcaaaatagtttctaacattaaaataatttgttaatattgtca 32934106  T
Q  107 tattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatca 175  Q
     ||||||| || |||||||||| || | ||||||||| || ||||| ||||||| ||||| ||||||||    
T  32934105 cattagtcttttaatatacttacttgttgtcacttcaagg-ctattttgactaataaagtgcaaaatca 32934038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 292
Target Start/End: Complemental strand, 6552376 - 6552296
Alignment:
Q  210 tagggaagggcatgtggggctaaagcctcgcatagcccttaacatagatccgcccctgatttcatactaagtgaaatttttac 292  Q
    |||||||||||||||||||||  |||| | || ||||| |||||||||||||||| || |||||||| |||||||||||||||    
T  6552376 tagggaagggcatgtggggctttagccccacaaagccc-taacatagatccgcccatg-tttcatacaaagtgaaatttttac 6552296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 17381615 - 17381489
Alignment:
Q  8 aatagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtca 106  Q
    |||||||| ||||||||| ||||||  ||| | ||| |||||||| |||||  ||| ||||| |||||| |   ||| ||||| ||| || |||||||||    
T  17381615 aatagtccctcaatgtatcaaaattccaaaatagtccctgattgtgcactttgttaatcaaaatagtccttgatattaaaatatttcgttaatattgtca 17381516  T
Q  107 tattagtccttcaatatacttatttat 133  Q
    |||||||||||||||||||||| ||||    
T  17381515 tattagtccttcaatatacttacttat 17381489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 8755983 - 8755906
Alignment:
Q  53 cacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatacttatt 130  Q
    |||||| ||| ||||| ||||| ||| |||| ||||||||| || |||||||||||||| ||||| ||||||||||||    
T  8755983 cacttcgttaatcaaaatagtctctaacattaaaatacttcgttaatattgtcatattaatcctttaatatacttatt 8755906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 46805081 - 46804961
Alignment:
Q  8 aatagtccatcaatgtattaaaattttaaa-ttgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtca 106  Q
    |||||||  ||||| ||||||||||||||| |||||||||||||| | |||| || |||||| ||||||||   ||| ||||| |||||| ||||| |||    
T  46805081 aatagtctttcaatatattaaaattttaaaattgtctctgattgtgc-cttcgttggtcaaaatagtccctgatattaaaatatttcattaatattatca 46804983  T
Q  107 tattagtccttcaatatactta 128  Q
    | | ||| ||||||||||||||    
T  46804982 tgtcagttcttcaatatactta 46804961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 48973390 - 48973337
Alignment:
Q  85 aaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 138  Q
    |||| ||||||| ||||||||||||||||||||||||||||||| |||| ||||    
T  48973390 aaatgcttcattaatattgtcatattagtccttcaatatacttacttattgtca 48973337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 13834563 - 13834508
Alignment:
Q  19 aatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagt 73  Q
    ||||||||||||||||||| | |||||||||| |||||||||||||||||| ||||    
T  13834563 aatgtattaaaattttaaaatagtctctgattttacacttcattagtcaaaatagt 13834508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 46804796 - 46804863
Alignment:
Q  8 aatagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtc 74  Q
    |||||||| ||||||||| ||||||||||| | ||||||||||||||||||  ||||||||| |||||    
T  46804796 aatagtccctcaatgtatcaaaattttaaaatagtctctgattgtacactttgttagtcaaaatagtc 46804863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 39331219 - 39331100
Alignment:
Q  19 aatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtcctt 117  Q
    |||||||| |||||||||| | || | ||||||| |||||| || ||||||| ||||| |   ||| |||| ||||||| ||||||| |||| |||| ||    
T  39331219 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaat-agtccatgatattaaaatgcttcattaatattgttatatcagtcttt 39331121  T
Q  118 caatatacttatttatcgtca 138  Q
    |||||||||||||||| ||||    
T  39331120 caatatacttatttattgtca 39331100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 4161864 - 4161825
Alignment:
Q  91 ttcattgatattgtcatattagtccttcaatatacttatt 130  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  4161864 ttcattaatattgtcatattagttcttcaatatacttatt 4161825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 7912534 - 7912645
Alignment:
Q  23 tattaaaatttt-aaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaat 121  Q
    |||| ||||||| |||| |||||| ||||| ||||||| |||||||| ||||||||   ||| |||| ||||||| |||||| || || | || ||||||    
T  7912534 tattgaaattttgaaatagtctctaattgtgcacttcactagtcaaaatagtccctcatattaaaatgcttcattaatattgacacatcaatcattcaat 7912633  T
Q  122 atacttatttat 133  Q
    ||||||| ||||    
T  7912634 atacttacttat 7912645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 31903370 - 31903429
Alignment:
Q  85 aaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcag 144  Q
    ||||| ||||||  ||||||||||| |||||||||||||||||| |||| |||| |||||    
T  31903370 aaataattcattagtattgtcatatcagtccttcaatatacttacttattgtcatttcag 31903429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 133
Target Start/End: Complemental strand, 36409694 - 36409659
Alignment:
Q  98 atattgtcatattagtccttcaatatacttatttat 133  Q
    ||||||||||||||||||||||||||||||| ||||    
T  36409694 atattgtcatattagtccttcaatatacttacttat 36409659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 133
Target Start/End: Complemental strand, 36423860 - 36423825
Alignment:
Q  98 atattgtcatattagtccttcaatatacttatttat 133  Q
    ||||||||||||||||||||||||||||||| ||||    
T  36423860 atattgtcatattagtccttcaatatacttacttat 36423825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 7616782 - 7616848
Alignment:
Q  3 gctaaaatagtccatcaatgtattaaaattttaaa-ttgtctctgattgtacacttcattagtcaaa 68  Q
    |||||||||||   ||| ||||||||||||||||| |||||||| |||||||| ||| |||||||||    
T  7616782 gctaaaatagtttttcagtgtattaaaattttaaatttgtctctaattgtacatttcgttagtcaaa 7616848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 24806746 - 24806664
Alignment:
Q  56 ttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 138  Q
    ||||||||||||| ||||| ||| |||| ||||| ||  || ||||||||||| ||||  ||||||||||||| |||| ||||    
T  24806746 ttcattagtcaaaatagtctctaacattaaaataatttgttaatattgtcatagtagtttttcaatatacttacttattgtca 24806664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 9297465 - 9297518
Alignment:
Q  80 cattcaaatacttcattgatattgtcatattagtccttcaatatacttatttat 133  Q
    |||| ||||||||  || ||||||||||||||||| || |||||||||||||||    
T  9297465 cattaaaatactttgttaatattgtcatattagtcattaaatatacttatttat 9297518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 45615652 - 45615709
Alignment:
Q  17 tcaatgtattaaaatttt-aaattgtctctgattgtacacttcattagtcaaattagt 73  Q
    |||||||||||||||||| |||| |||||||||| | ||||| |||||||||| ||||    
T  45615652 tcaatgtattaaaattttaaaatagtctctgattttgcactttattagtcaaaatagt 45615709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 46805794 - 46805855
Alignment:
Q  8 aatagtccatcaatgtattaaaattttaaa-ttgtctctgattgtacacttcattagtcaaa 68  Q
    |||||| | ||||||||||||||||||||| | |||  |||||||||||||| |||||||||    
T  46805794 aatagtacctcaatgtattaaaattttaaagtagtcattgattgtacacttcgttagtcaaa 46805855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 1758349 - 1758454
Alignment:
Q  17 tcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtcc 115  Q
    ||||||||| ||||||| ||| | || ||| |||||  ||||| ||||||||| |||||| |  |||| ||||||||| || ||||||||||  ||||||    
T  1758349 tcaatgtatcaaaatttcaaaatagtttcttattgtgtacttcgttagtcaaaatagtccttgacattaaaatacttcgttaatattgtcat--tagtcc 1758446  T
Q  116 ttcaatat 123  Q
    ||||||||    
T  1758447 ttcaatat 1758454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 36754602 - 36754812
Alignment:
Q  1 aggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgata 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | ||||||| |||||||||||||||||||||    
T  36754602 aggctaagatagtccatcaatgtattaaaattttaaattgtctctgattgtatagttcattagtcaaaatggtccctaacattcaaatacttcattgata 36754701  T
Q  101 ttgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaataca 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  36754702 ttgtcatattagtccttcaatatacttatttattgtcacttcatggactattatgactaacaaagtacaaaatcatgaattattttagaattttaataca 36754801  T
Q  201 gtgagagatta 211  Q
     ||||||||||    
T  36754802 ctgagagatta 36754812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 41528575 - 41528669
Alignment:
Q  1 aggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcatt 96  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||    
T  41528575 aggctaaaatagtacatcaatgtattaaaattttaaattgtctctgattgtacactt-attagtcaaaatagtccctaacattcaaatacttcatt 41528669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 7681073 - 7680907
Alignment:
Q  10 tagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcata 108  Q
    |||||| ||||||||| ||||||||||| | || | ||||||| || ||| ||||||||| | ||||||| |||| ||||| ||| || ||||||||||     
T  7681073 tagtccctcaatgtatcaaaattttaaaatagtatttgattgtgcatttcgttagtcaaaatcgtccctaacattaaaataattcgttaatattgtcatc 7680974  T
Q  109 ttagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatca 175  Q
    |||||  |||||||| |||| |||| |||| |||| |||||||||||| ||||||||||||||||||    
T  7680973 ttagtatttcaatatccttacttattgtcatttcaaggactattatgagtaacaaagtacaaaatca 7680907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 1249347 - 1249150
Alignment:
Q  2 ggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatat 101  Q
    ||||||||| |||  | ||||||||||||||| ||||||||  |||||||||| ||| ||||||||| || ||  || |||| ||||| ||  || |||     
T  1249347 ggctaaaatggtctcttaatgtattaaaatttcaaattgtcattgattgtacatttcgttagtcaaaataatctataacattaaaatattttgttaatac 1249248  T
Q  102 tgtcatattagtccttcaatatacttatttatcgtcac-ttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaata 198  Q
    |||||||| ||| |||||||||| ||| |||| ||||| |||| |||||||| ||||||||||||  |||||||||| | |||||||||| |||||||    
T  1249247 tgtcatatcagtacttcaatatatttacttattgtcactttcaaggactattttgactaacaaagagcaaaatcatgaactattttagaattttaata 1249150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 33590340 - 33590138
Alignment:
Q  5 taaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgt 104  Q
    ||||||||||  | ||||||| |||||| ||||||||| | |||| |||| ||  ||||||||| || |||||| |||| ||||||||| || |||||||    
T  33590340 taaaatagtcttttaatgtatcaaaattataaattgtc-cagattatacattttgttagtcaaaataatccctaacattaaaatacttcgttaatattgt 33590242  T
Q  105 catattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaatacagtga 204  Q
    |||||   | |||||||||| ||| |||| ||||||| |  ||||||  ||||||||||||| |||||||||| | ||||||| || ||||||||| |||    
T  33590241 catatcgattcttcaatataattaattattgtcacttaaaagactatattgactaacaaagtgcaaaatcatgaactattttacaattttaatacattga 33590142  T
Q  205 gaga 208  Q
    ||||    
T  33590141 gaga 33590138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 41303216 - 41303046
Alignment:
Q  8 aatagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtccctat--cattcaaatacttcattgatattgt 104  Q
    |||||||| ||||||||| ||||||||||| | |||  ||||| | |||||   |||||||| ||||||| ||  |||| ||||| ||  || |||||||    
T  41303216 aatagtccctcaatgtatcaaaattttaaaatagtcattgattatgcactttgctagtcaaaatagtcccgataacattaaaataatttgttaatattgt 41303117  T
Q  105 catattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcat 176  Q
    |||||||||| || |||||||||| |||| |||||| ||||| ||||| ||||||||||||| |||||||||    
T  41303116 catattagtcttttaatatacttaattattgtcactccaggg-ctattttgactaacaaagtgcaaaatcat 41303046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 21602195 - 21602122
Alignment:
Q  53 cacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatact 126  Q
    |||||||||| ||||| ||||||||  |||| ||||| ||| || |||||||||||||||||||||||||||||    
T  21602195 cacttcattaatcaaaatagtccctgacattaaaataattcgttaatattgtcatattagtccttcaatatact 21602122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 6393861 - 6393944
Alignment:
Q  45 tgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatactta 128  Q
    ||||||| ||||| |||||||||| |||| |||| |||| ||||| ||| || ||||| |||||||||| ||||||||||||||    
T  6393861 tgattgtgcactttattagtcaaaatagttcctaacattaaaatagttctttaatattatcatattagttcttcaatatactta 6393944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 41528704 - 41528786
Alignment:
Q  210 tagggaagggcatgtggggctaaagcctcgcatagcccttaacatagatccgcccctgatttcatactaagtgaaatttttact 293  Q
    ||||||||||||||| |||||  |||| | ||||| ||| ||||||||||||||  ||||||||||| ||||||||||||||||    
T  41528704 tagggaagggcatgtagggctttagccccacatagtcct-aacatagatccgccattgatttcatacaaagtgaaatttttact 41528786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 21600443 - 21600579
Alignment:
Q  8 aatagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtca 106  Q
    |||||||| | ||||||| ||||||||||| | |||  ||||||| || ||| ||| | ||||||||| ||    || ||||| |||||| |||||||||    
T  21600443 aatagtcccttaatgtatcaaaattttaaaatagtcattgattgtgcatttcgttaataaaattagtcactgatgttaaaatatttcattaatattgtca 21600542  T
Q  107 tattagtccttcaatatacttatttatcgtcacttca 143  Q
    |||| ||||||||||||||||| |||| |||| ||||    
T  21600543 tatttgtccttcaatatacttacttattgtcatttca 21600579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 3662413 - 3662488
Alignment:
Q  63 gtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 138  Q
    |||||||||||||||| |||| ||||| ||  || |||||||||||||||| ||| |||||||||| |||| ||||    
T  3662413 gtcaaattagtccctagcattaaaataatttgttaatattgtcatattagttctttaatatacttacttattgtca 3662488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 33508674 - 33508621
Alignment:
Q  80 cattcaaatacttcattgatattgtcatattagtccttcaatatacttatttat 133  Q
    |||| |||||||||||| ||||| || |||||||||||||||||||||| ||||    
T  33508674 cattaaaatacttcattaatattatcgtattagtccttcaatatacttacttat 33508621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 293
Target Start/End: Original strand, 36754888 - 36754962
Alignment:
Q  218 ggcatgtggggctaaagcctcgcatagcccttaacatagatccgcccctgatttcatactaagtgaaatttttact 293  Q
    |||||||||||||  |||| | ||||| ||| |||||||||||| || ||||||||||| |||| |||||||||||    
T  36754888 ggcatgtggggctttagccccacatagtcct-aacatagatccgtccttgatttcatacaaagtaaaatttttact 36754962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 42659935 - 42659981
Alignment:
Q  98 atattgtcatattagtccttcaatatacttatttatcgtcacttcag 144  Q
    ||||||||||||||||| ||||||||||||| |||| ||||| ||||    
T  42659935 atattgtcatattagtcattcaatatacttacttattgtcacatcag 42659981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 42844877 - 42844990
Alignment:
Q  12 gtccatcaatgtattaaaatttta-aattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatatt 110  Q
    |||| ||||||||| ||||||||  ||| | || ||||||||||||| |||||||||| |||| |||   ||| ||||  |||||| ||||||||||||     
T  42844877 gtccttcaatgtatcaaaattttcgaataggctttgattgtacacttaattagtcaaaatagttcctgatattaaaatgtttcattaatattgtcatatc 42844976  T
Q  111 agtccttcaatata 124  Q
    | || |||||||||    
T  42844977 aatcattcaatata 42844990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 4 - 211
Target Start/End: Complemental strand, 49880297 - 49880091
Alignment:
Q  4 ctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattg 103  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||    
T  49880297 ctaaaatagtccaccaatgtatttaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccctaacattaaaatacttcattgatattg 49880198  T
Q  104 tcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaatacagtg 203  Q
    ||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  49880197 tcatattagtctttcaatatacttacttattgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaa-tttaatacactg 49880099  T
Q  204 agagatta 211  Q
    ||||||||    
T  49880098 agagatta 49880091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 45919788 - 45919969
Alignment:
Q  4 ctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattg 103  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||| |||||||||||||||||||    
T  45919788 ctaaaatagtccaccaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaataatccctaacattaaaatacttcattgatattg 45919887  T
Q  104 tcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattt 185  Q
    |||||||   ||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  45919888 tcatattgacccttcaatatacttacttattgtcactttagggactattatgactaacaaagtacaaaatcatgaattattt 45919969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 208
Target Start/End: Original strand, 9890556 - 9890758
Alignment:
Q  2 ggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatat 101  Q
    ||||||||| |||  ||||||||||||||||||||||||||| |||||||||| ||| ||||||||| || ||| || ||||  |||||||| || ||||    
T  9890556 ggctaaaatggtctttcaatgtattaaaattttaaattgtctttgattgtacatttcgttagtcaaaataatccttaacattagaatacttcgttaatat 9890655  T
Q  102 tgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaatacag 201  Q
    |||||||||||||||||||||||||||||    |||| || |||||||||| ||||||||||||| ||||||||||   |||||||||| |||||||||     
T  9890656 tgtcatattagtccttcaatatacttatt----gtcatttaagggactattttgactaacaaagtgcaaaatcatgatctattttagaattttaatacat 9890751  T
Q  202 tgagaga 208  Q
    |||||||    
T  9890752 tgagaga 9890758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 40872580 - 40872776
Alignment:
Q  1 aggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgata 100  Q
    ||||||||||||||| | ||||||| ||||||||||||| | |   |||||||| ||| ||||||||| |||| | |  |||| |||||||| ||| |||    
T  40872580 aggctaaaatagtcccttaatgtatcaaaattttaaatttttttaaattgtacaattcgttagtcaaaatagttcgttacattaaaatacttaattaata 40872679  T
Q  101 ttgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaataca 200  Q
    |||||||||||| |||  |||||||||| |||| ||||||||| ||||   |||||||||||||||||||||||| ||| ||| ||| || |||||||||    
T  40872680 ttgtcatattagccctataatatacttacttattgtcacttcaaggac---tatgactaacaaagtacaaaatcagggactatattaaaattttaataca 40872776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 27463963 - 27463771
Alignment:
Q  17 tcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtcc 115  Q
    ||||||||| ||||||| ||| | ||||||| |||| |||||| |||| |||| |||| |||| | || ||||||||  || ||||||| |||||||||     
T  27463963 tcaatgtatcaaaatttcaaaatagtctctggttgtgcacttcgttagacaaaatagttcctaacgttaaaatactttgttaatattgttatattagtct 27463864  T
Q  116 ttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaatacagtgagaga 208  Q
    ||||||||||||| |||| |||| ||||  ||||||| ||||||||||||| |||||| |  || |||||||||| ||||||||| |||||||    
T  27463863 ttcaatatacttacttattgtcatttcaaagactattttgactaacaaagtgcaaaattagagactattttagaattttaatacattgagaga 27463771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 16658111 - 16658307
Alignment:
Q  5 taaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgt 104  Q
    ||||||||||| | ||| ||| ||||  ||||||||||||| |||||||| |||  | |||||| ||||  ||| |||| |||||||||||| ||||  |    
T  16658111 taaaatagtccctaaatatataaaaaaattaaattgtctctaattgtacatttcgatggtcaaaatagtttctaacattaaaatacttcattaatatatt 16658210  T
Q  105 catattagtccttca-atatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaataca 200  Q
    ||||| |  ||||   ||||||||| ||||  |||||||| | ||||||||||||||||||||||||||||| ||| |||||||||| |||||||||    
T  16658211 catatcaacccttttgatatacttacttattatcacttcatgaactattatgactaacaaagtacaaaatcacggactattttagaattttaataca 16658307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 31738321 - 31738433
Alignment:
Q  98 atattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaat 197  Q
    |||||||||||||| || || ||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||   ||||||||| || | ||||    
T  31738321 atattgtcatattaatcatttaatatacttatttattgtcacttcagg-actattttgactaacaaagtacaaaatcaaaaattattttaaaattctaat 31738419  T
Q  198 acagtgagagatta 211  Q
    ||| ||||||||||    
T  31738420 acattgagagatta 31738433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 47922011 - 47921876
Alignment:
Q  17 tcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtcct 116  Q
    ||||||||| ||| ||||||||||| | |||||||||| ||||||||||||| || |||||| ||||   |||||||||| || || ||||||||  |||    
T  47922011 tcaatgtataaaatttttaaattgtttttgattgtacatttcattagtcaaaataatccctaacattatgatacttcattaatcttatcatattaaccct 47921912  T
Q  117 tcaatatacttatttatcgtcacttcagggactatt 152  Q
    |||||||||||| |||| |||| |||| ||||||||    
T  47921911 tcaatatacttacttattgtcagttcatggactatt 47921876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 200
Target Start/End: Complemental strand, 8069161 - 8069009
Alignment:
Q  47 attgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcaggg 146  Q
    |||||||| ||| ||||||||| || ||| ||  ||| ||||| ||  || |||||||||||||| ||| |||||||||||| ||||  ||| || |||     
T  8069161 attgtacatttcgttagtcaaaataatccttaatattaaaatattttgttaatattgtcatattaatccatcaatatacttacttattatcatttaagga 8069062  T
Q  147 actattatgactaacaaagtacaaaatcatggattattttagaagtttaataca 200  Q
    ||| || ||||||||||||| |||||||||| | |||||||||| |||||||||    
T  8069061 actttt-tgactaacaaagtgcaaaatcatgaactattttagaattttaataca 8069009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 80 - 200
Target Start/End: Complemental strand, 52362074 - 52361954
Alignment:
Q  80 cattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgga 179  Q
    |||| ||||||||  || ||||| |||||||||| |||| ||||||||||||||  ||||||||  || |||| ||| ||| ||||| ||||||||  ||    
T  52362074 cattaaaatactttgttaatattatcatattagttcttcgatatacttatttattatcacttcattgattattttgaataataaagtgcaaaatcagaga 52361975  T
Q  180 ttattttagaagtttaataca 200  Q
     ||||||| || |||||||||    
T  52361974 ctattttaaaattttaataca 52361954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 6541118 - 6541176
Alignment:
Q  80 cattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 138  Q
    |||| ||||| ||| || ||||||||||||||||||||||||||||||| |||| ||||    
T  6541118 cattaaaatatttcgttaatattgtcatattagtccttcaatatacttacttattgtca 6541176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 51849622 - 51849552
Alignment:
Q  5 taaaatagtccatcaatgtattaaaatttt-aaattgtctctgattgtacacttcattagtcaaattagtc 74  Q
    ||||||||||| | |||||||||||||||| |||| || | |||||||||||||| ||||||||| |||||    
T  51849622 taaaatagtccctgaatgtattaaaattttaaaatagtttgtgattgtacacttctttagtcaaaatagtc 51849552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 33747898 - 33747858
Alignment:
Q  91 ttcattgatattgtcatattagtccttcaatatacttattt 131  Q
    |||||| |||||||||||||| |||||||||||||||||||    
T  33747898 ttcattaatattgtcatattaatccttcaatatacttattt 33747858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 34827036 - 34826996
Alignment:
Q  98 atattgtcatattagtccttcaatatacttatttatcgtca 138  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  34827036 atattgtcatattagtcattcaatatacttatttattgtca 34826996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 49879977 - 49879921
Alignment:
Q  210 tagggaagggcatgtggggctaaagcctcgcatagcccttaacatagatccgcccctg 267  Q
    |||||||| ||||||||||||  |||| | ||||||||| ||||||||||||||||||    
T  49879977 tagggaagagcatgtggggctttagccccacatagccct-aacatagatccgcccctg 49879921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 38267398 - 38267350
Alignment:
Q  85 aaatacttcattgatattgtcatattagtccttcaatatacttatttat 133  Q
    |||| ||||||| |||||||||||||| |||||||||||| ||| ||||    
T  38267398 aaatgcttcattaatattgtcatattaatccttcaatatatttacttat 38267350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 31967403 - 31967613
Alignment:
Q  1 aggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgata 100  Q
    |||||||| |||||||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  31967403 aggctaaagtagtccatcaatttataaaaaatttaagttgtctctgattgtacacttcattagtcaaaatagtccctaacattcaaatacttcattgata 31967502  T
Q  101 ttgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaataca 200  Q
    ||||||||||||||||||||||||||| ||||  |||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  31967503 ttgtcatattagtccttcaatatacttttttactgtcacttcagagactattatgactaacaaagtacaaaatcatggattcttttagaattttaataca 31967602  T
Q  201 gtgagagatta 211  Q
     ||||||||||    
T  31967603 ctgagagatta 31967613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 2 - 208
Target Start/End: Original strand, 41746362 - 41746568
Alignment:
Q  2 ggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatat 101  Q
    ||||||||||| || | ||| ||| |||||||||||||||||||||||||| ||||| ||| ||||| ||||| ||| |||| |||||||||||| ||||    
T  41746362 ggctaaaatagacccttaatatatcaaaattttaaattgtctctgattgtatacttcgttattcaaaatagtctctaacattaaaatacttcattaatat 41746461  T
Q  102 tgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaatacag 201  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| | |||||||||| || ||||||     
T  41746462 tgtcatattagcccttcaatatacttatttattgtcacttcagggactattatgtctaaaaaagtacaaaatcatgaactattttagaatttaaatacat 41746561  T
Q  202 tgagaga 208  Q
    |||||||    
T  41746562 tgagaga 41746568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 40124305 - 40124431
Alignment:
Q  8 aatagtccatcaatgtattaaaattttaaattg-tctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtca 106  Q
    |||||||||| |||||||  |||||||||| || ||||||||||| |||| | ||||||||| |||||| || |||| || ||||||||| |||||||||    
T  40124305 aatagtccattaatgtatcgaaattttaaaatggtctctgattgtgcactccgttagtcaaaatagtccataacattaaagtacttcattaatattgtca 40124404  T
Q  107 tattagtccttcaatatacttatttat 133  Q
    |||||| ||||||||||||||| ||||    
T  40124405 tattagcccttcaatatacttacttat 40124431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 45 - 200
Target Start/End: Original strand, 7165643 - 7165798
Alignment:
Q  45 tgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcag 144  Q
    ||||||| ||||| |||||||||| |||||| || |||| ||||| ||  || ||||| ||||||||||| ||||||||||||| |||| |||||||||     
T  7165643 tgattgtgcactttattagtcaaaatagtccttaacattaaaataatttgttaatattttcatattagtctttcaatatacttacttattgtcacttcaa 7165742  T
Q  145 ggactattatgactaacaaagtacaaaatcatggattattttagaagtttaataca 200  Q
     ||||||| | ||||| ||||| ||||||||  || ||||||| || |||||||||    
T  7165743 agactattttaactaataaagtgcaaaatcagagactattttaaaattttaataca 7165798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 200
Target Start/End: Complemental strand, 17742654 - 17742516
Alignment:
Q  61 tagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaa 160  Q
    |||||| | |||| |||| |||| ||||| ||  || ||||||||||||||||| || |||||||||| |||| |||||||||||| ||||| | |||||    
T  17742654 tagtcacaatagtgcctaacatttaaataatttgttaatattgtcatattagtcttttaatatacttacttattgtcacttcaggg-ctattttaactaa 17742556  T
Q  161 caaagtacaaaatcatggattattttagaagtttaataca 200  Q
    |||||| ||||||||  || ||||||| || |||||||||    
T  17742555 caaagtgcaaaatcagagactattttaaaattttaataca 17742516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 9470649 - 9470797
Alignment:
Q  5 taaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgt 104  Q
    ||||||||||  | ||| ||| ||||||||||||||||||| |||||| ||||  ||||| ||| || || |||  ||| |||||||||||| || || |    
T  9470649 taaaatagtcactaaatatatcaaaattttaaattgtctctaattgtatactttgttagttaaaataatctctaaaattaaaatacttcattaat-ttat 9470747  T
Q  105 catattagtccttcaatatacttatttatcgtcacttcagggactattat 154  Q
    ||| ||||  |||||||||||||| ||||  |||||| | ||||||||||    
T  9470748 catgttagctcttcaatatacttacttattatcacttaacggactattat 9470797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 23077848 - 23077922
Alignment:
Q  2 ggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccc 76  Q
    |||||||||||| | ||||||||| |||||||||| |||||| |||||||  ||||  ||||||||| |||||||    
T  23077848 ggctaaaatagttcctcaatgtatcaaaattttaagttgtctttgattgttgactttgttagtcaaaatagtccc 23077922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 9471792 - 9471845
Alignment:
Q  147 actattatgactaacaaagtacaaaatcatggattattttagaagtttaataca 200  Q
    |||||||||||||||||||||||||| ||  || |||||||||| |||||||||    
T  9471792 actattatgactaacaaagtacaaaaacaatgactattttagaattttaataca 9471845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 33260990 - 33261075
Alignment:
Q  45 tgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatacttatt 130  Q
    |||||| ||||||| ||||||||| |||||  |  || | ||||| ||| ||||||||||||||||| | ||||||||||||||||    
T  33260990 tgattgaacacttcgttagtcaaaatagtctttgacagtaaaatatttcgttgatattgtcatattatttcttcaatatacttatt 33261075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 133
Target Start/End: Complemental strand, 15301598 - 15301526
Alignment:
Q  61 tagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatacttatttat 133  Q
    |||||||| ||||| ||  |||| ||||||||| || |||||||| ||||||| |||||||||||||| ||||    
T  15301598 tagtcaaaatagtctctgacattaaaatacttcgttaatattgtcttattagtacttcaatatacttacttat 15301526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 12676513 - 12676553
Alignment:
Q  98 atattgtcatattagtccttcaatatacttatttatcgtca 138  Q
    |||||||||||||||||| ||||||||||||| ||| ||||    
T  12676513 atattgtcatattagtccctcaatatacttatctattgtca 12676553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 15816894 - 15816942
Alignment:
Q  85 aaatacttcattgatattgtcatattagtccttcaatatacttatttat 133  Q
    ||||||||  || ||||||||||||||||||||||| ||||||| ||||    
T  15816894 aaatactttgttaatattgtcatattagtccttcaagatacttacttat 15816942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 39 - 211
Target Start/End: Complemental strand, 50239970 - 50239800
Alignment:
Q  39 tgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 138  Q
    ||||||||||||||||||| |||||||||| ||||||  | ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  50239970 tgtctctgattgtacactttattagtcaaaatagtcc--aacattcaaatacttaattgatattgtcatattagtccttcaatatacttatttattgtca 50239873  T
Q  139 cttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaatacagtgagagatta 211  Q
    |||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||| ||||||||||    
T  50239872 cttcagggactattataactaacaaagtacataaacatggattattttagaattttaatacactgagagatta 50239800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 5 - 200
Target Start/End: Complemental strand, 7672582 - 7672391
Alignment:
Q  5 taaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgt 104  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||  ||||||||| ||||| ||| |||| |||||||||||  ||| |||    
T  7672582 taaaatagttcatcaatgtattaaaattttaaattgtctctgattgtacattttgttagtcaaaatagtctctaacattaaaatacttcatcaata-tgt 7672484  T
Q  105 catattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaataca 200  Q
    ||| ||||  ||||||||||| || |||| |||||||||  |||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  7672483 cat-ttagctcttcaatatac-tacttattgtcacttca-tgactattatgactaacaaagtacaaaatcatgaattattttagaattttaataca 7672391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 2 - 206
Target Start/End: Complemental strand, 43838701 - 43838486
Alignment:
Q  2 ggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatat 101  Q
    |||||||||||| | ||||||||| ||||||||| ||||||||||||| ||||| || ||||||||| || || | | |||| |||||||||||| ||||    
T  43838701 ggctaaaatagttcctcaatgtatcaaaattttacattgtctctgattctacacatcgttagtcaaaataatctcgaacattaaaatacttcattaatat 43838602  T
Q  102 tgtc-----------atattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaa 190  Q
    ||||           ||||||| ||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||  || ||||||| ||    
T  43838601 tgtccctcgttagtcatattagcccttcaatatacttacttattgtcacttcatggactattatgactaacaaagtacaaaatcaaagactattttaaaa 43838502  T
Q  191 gtttaatacagtgaga 206  Q
     ||||||||| |||||    
T  43838501 ttttaatacattgaga 43838486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 30006165 - 30006293
Alignment:
Q  5 taaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgt 104  Q
    |||||||||||  |||||||||||||||||||||| |||||||||||||| ||| ||||||||| |||  | || |||| ||||| |||||| ||||| |    
T  30006165 taaaatagtcccacaatgtattaaaattttaaattatctctgattgtacatttcgttagtcaaaatagctcttaacattaaaatatttcattaatattat 30006264  T
Q  105 catattagtccttcaatatacttatttat 133  Q
     ||||||   |||||||||||||||||||    
T  30006265 tatattatctcttcaatatacttatttat 30006293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 293
Target Start/End: Complemental strand, 50239731 - 50239649
Alignment:
Q  210 tagggaagggcatgtggggctaaagcctcgcatagcccttaacatagatccgcccctgatttcatactaagtgaaatttttact 293  Q
    |||||||||||||||||||||  |||||| ||||||||| |||||| |||| || |||||||||||| ||||||||||||||||    
T  50239731 tagggaagggcatgtggggctttagcctcacatagccct-aacatatatccaccgctgatttcatacaaagtgaaatttttact 50239649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 14984484 - 14984567
Alignment:
Q  44 ctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatactt 127  Q
    |||||||| |||||| ||||||||| |||| |||  |||| ||||| ||| || |||||||||||||| |||||||||||||||    
T  14984484 ctgattgtgcacttcgttagtcaaaatagttcctgacattaaaatatttcgttaatattgtcatattaatccttcaatatactt 14984567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 30843658 - 30843711
Alignment:
Q  85 aaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 138  Q
    |||| ||||||| ||||||||||||||||| |||||||||||||||||| ||||    
T  30843658 aaatgcttcattaatattgtcatattagtctttcaatatacttatttattgtca 30843711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 138
Target Start/End: Complemental strand, 23195792 - 23195656
Alignment:
Q  3 gctaaaatagtccatcaatgtattaaaattttaaattg-tctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatat 101  Q
    |||| |||||||  ||||||||||||||||||||| |  | ||||||||| || |||||||||  || |||||  |  |||| || || ||| || ||||    
T  23195792 gctacaatagtctttcaatgtattaaaattttaaaataatttctgattgtgcatttcattagttcaaatagtctatgacattaaagtatttcgttaatat 23195693  T
Q  102 tgtcatattagtccttcaatatacttatttatcgtca 138  Q
    ||||||||||||| ||||||||||||| |||| ||||    
T  23195692 tgtcatattagtctttcaatatacttaattattgtca 23195656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 125
Target Start/End: Original strand, 3941666 - 3941704
Alignment:
Q  87 atacttcattgatattgtcatattagtccttcaatatac 125  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  3941666 atacttcattaatattgtcatattagtccttcaatatac 3941704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 26499839 - 26499887
Alignment:
Q  85 aaatacttcattgatattgtcatattagtccttcaatatacttatttat 133  Q
    |||||||||||| ||||| |||||| |||| ||||||||||||||||||    
T  26499839 aaatacttcattaatattttcatatcagtcattcaatatacttatttat 26499887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 22235228 - 22235295
Alignment:
Q  8 aatagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtc 74  Q
    |||||||| | ||||||||||||||| ||| | ||| ||||||||||||||| ||||||||| |||||    
T  22235228 aatagtccttgaatgtattaaaatttcaaaatagtcgctgattgtacacttcgttagtcaaaatagtc 22235295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 34979188 - 34979110
Alignment:
Q  60 ttagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 138  Q
    ||||||||| ||||| ||  |||| ||||| ||| || ||||| ||||||||||| ||||||||||||| |||| ||||    
T  34979188 ttagtcaaaatagtctctcacattaaaatatttcgttaatattatcatattagtcattcaatatacttacttattgtca 34979110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 12832260 - 12832219
Alignment:
Q  85 aaatacttcattgatattgtcatattagtccttcaatatact 126  Q
    |||| ||||||| |||||||||||| ||||||||||||||||    
T  12832260 aaatgcttcattaatattgtcatataagtccttcaatatact 12832219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 21568379 - 21568468
Alignment:
Q  44 ctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatacttatttat 133  Q
    |||||||| || ||||||||||||| ||| || |    || |||| ||||||| ||||| ||||||| ||||||||||||||||| ||||    
T  21568379 ctgattgtgcaattcattagtcaaaatagcccatgatgttaaaatgcttcattaatattctcatatttgtccttcaatatacttacttat 21568468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 37852904 - 37852953
Alignment:
Q  90 cttcattgatattgtcatattagtccttcaatatacttatttatcgtcac 139  Q
    ||||||| ||| ||||||||||||| || ||||||||||||||| |||||    
T  37852904 cttcattaataatgtcatattagtcttttaatatacttatttattgtcac 37852953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 41897973 - 41898049
Alignment:
Q  98 atattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatca 175  Q
    ||||||||||||||||| || |||||| |||||| | ||||||| || | ||||| ||| ||||||||| ||||||||    
T  41897973 atattgtcatattagtcttttaatatatttatttgttgtcactttagag-ctattttgattaacaaagtgcaaaatca 41898049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 14194910 - 14194862
Alignment:
Q  85 aaatacttcattgatattgtcatattagtccttcaatatacttatttat 133  Q
    |||||||||||| |||||||||||| |||| || |||||||||| ||||    
T  14194910 aaatacttcattaatattgtcatatcagtcatttaatatacttagttat 14194862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 39336770 - 39336722
Alignment:
Q  85 aaatacttcattgatattgtcatattagtccttcaatatacttatttat 133  Q
    |||| ||||||| |||||| ||||||| |||||||||||||||| ||||    
T  39336770 aaatgcttcatttatattgacatattaatccttcaatatacttacttat 39336722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 53705944 - 53705888
Alignment:
Q  80 cattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgt 136  Q
    |||| ||||||||  || ||||||||||||||||  ||||||||||||| |||||||    
T  53705944 cattaaaatactttgttaatattgtcatattagttattcaatatacttacttatcgt 53705888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 21237406 - 21237203
Alignment:
Q  5 taaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgt 104  Q
    |||||||||||   ||||||| |||||||||||||||||||||||||| | ||| |||||||||||| | |||| |||| |||||||||||| | |||||    
T  21237406 taaaatagtcccataatgtatcaaaattttaaattgtctctgattgtatatttcgttagtcaaattaattcctaacattaaaatacttcattaacattgt 21237307  T
Q  105 catattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaatacagtga 204  Q
    |||||||| | ||||||||||||| |||| |||||| ||||||||||||||||||| |||||||||| ||| ||| |||||||||| ||||||||| |||    
T  21237306 catattagccgttcaatatacttagttattgtcactccagggactattatgactaataaagtacaaactcagggactattttagaattttaatacattga 21237207  T
Q  205 gaga 208  Q
    ||||    
T  21237206 gaga 21237203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 4 - 208
Target Start/End: Complemental strand, 6525088 - 6524890
Alignment:
Q  4 ctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattg 103  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| || |||||| |||||| || |||| |||||||||||| ||||||    
T  6525088 ctaaaatagtccatcaatgtatcaaaattttaaattgtctttgattatacacttcgtttgtcaaaatagtccgtaacattaaaatacttcattaatattg 6524989  T
Q  104 tcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaatacagtg 203  Q
    ||||||||||||||||||||| ||| ||||  |||||| |  |||||     || ||||||||||||||||| ||| |||||||||| ||||||||| ||    
T  6524988 tcatattagtccttcaatatatttacttattctcacttta-tgacta-----acaaacaaagtacaaaatcagggactattttagaattttaatacattg 6524895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 26293605 - 26293425
Alignment:
Q  17 tcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtcct 116  Q
    ||||||||| ||||||||||||||| | | ||| |||| |   ||||||||| |||||| || |||| ||||||||  || ||||| ||||||||||| |    
T  26293605 tcaatgtatcaaaattttaaattgttttttatt-tacattctgttagtcaaaatagtccttaacattaaaatactttgttaatattatcatattagtcat 26293507  T
Q  117 tcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaata 198  Q
    ||||||||| || |||| ||||||| |    ||||| |||||||||||||||||||||||||| |||||||||| |||||||    
T  26293506 tcaatatacatacttattgtcactttaaatgctattttgactaacaaagtacaaaatcatggactattttagaattttaata 26293425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 9307518 - 9307403
Alignment:
Q  18 caatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtcct 116  Q
    ||||||||| |||||||||| | ||| |||| ||| || |||||| ||||||| |||||||  |||| ||||| |||||| | |||||||||||||||||    
T  9307518 caatgtattgaaattttaaaatagtccctgaatgtgcatttcatttgtcaaat-agtccctgacattaaaataattcattaacattgtcatattagtcct 9307420  T
Q  117 tcaatatacttatttat 133  Q
    |||||||||||| ||||    
T  9307419 tcaatatacttacttat 9307403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 14549313 - 14549249
Alignment:
Q  4 ctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaa 68  Q
    ||||||||||   ||||||||||||||||| ||||| || |||||||||||||||||||||||||    
T  14549313 ctaaaatagtagctcaatgtattaaaatttcaaattctccctgattgtacacttcattagtcaaa 14549249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 17848884 - 17848727
Alignment:
Q  17 tcaatgtattaaaatttt-aaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtcc 115  Q
    ||||||||| |||||||| ||||  | || |||||| || ||| ||||||||| |||||  || |||| ||||||||| || |||||| ||||||||||     
T  17848884 tcaatgtatcaaaattttaaaataatttcagattgtgcatttcgttagtcaaaatagtctttaacattaaaatacttcgttaatattgacatattagtca 17848785  T
Q  116 ttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaat 173  Q
    ||  ||||||||| |||| ||||| || ||||||||| | ||||| ||| | ||||||    
T  17848784 tttgatatacttacttattgtcacatctgggactattttcactaataaaatgcaaaat 17848727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 20565837 - 20565728
Alignment:
Q  8 aatagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtca 106  Q
    ||||||||||||||||||  || ||||||| | |||||||||||| ||||||  |||||||| || ||| || |||| ||||| ||| || ||||| |||    
T  20565837 aatagtccatcaatgtatcgaatttttaaaatagtctctgattgtccacttcgctagtcaaaataatccataacattaaaatatttcgttaatattttca 20565738  T
Q  107 tattagtcct 116  Q
    ||||||||||    
T  20565737 tattagtcct 20565728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 10067786 - 10067660
Alignment:
Q  8 aatagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtca 106  Q
    |||||||  |||||||||  |||||||||| | ||||||||||||  | ||  ||| ||||| ||||| ||  |||| ||||||||  || |||||||||    
T  10067786 aatagtctctcaatgtatcgaaattttaaaatagtctctgattgtgtattttgttaatcaaaatagtctctgacattaaaatactttgttaatattgtca 10067687  T
Q  107 tattagtccttcaatatacttatttat 133  Q
    |||||||| ||||||||||||| ||||    
T  10067686 tattagtcattcaatatacttacttat 10067660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 16431665 - 16431591
Alignment:
Q  64 tcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 138  Q
    ||||| ||||| ||| |||| ||||| |||| | ||||||||||||||||| ||||||||||||| |||| ||||    
T  16431665 tcaaaatagtctctaacattaaaataattcactaatattgtcatattagtcattcaatatacttacttattgtca 16431591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 12291698 - 12291646
Alignment:
Q  6 aaaatagtccatcaatgtattaaaatttt-aaattgtctctgattgtacactt 57  Q
    |||||||||| |||||||||||||||||| |||| |||| |||||||||||||    
T  12291698 aaaatagtccctcaatgtattaaaattttaaaatagtctttgattgtacactt 12291646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 21021106 - 21021035
Alignment:
Q  59 attagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatacttatt 130  Q
    |||||||||| |||||  || |||| ||||| ||| ||  |||| |||||||||||||||||||||||||||    
T  21021106 attagtcaaaatagtcattaacattaaaatatttcgttattattatcatattagtccttcaatatacttatt 21021035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 29927700 - 29927657
Alignment:
Q  95 ttgatattgtcatattagtccttcaatatacttatttatcgtca 138  Q
    ||||||||||||||||||| |||||||| |||||||||| ||||    
T  29927700 ttgatattgtcatattagttcttcaataaacttatttattgtca 29927657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 25085112 - 25085014
Alignment:
Q  45 tgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttca 143  Q
    ||||||| |||||  ||||||||| |||||  || |||| ||||| ||  || |||||||||||||| || ||||||||||||| ||||  ||||||||    
T  25085112 tgattgtgcactttgttagtcaaaatagtctttaacattaaaataatttgttaatattgtcatattattctttcaatatacttacttattttcacttca 25085014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 23887562 - 23887649
Alignment:
Q  35 aaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatata 124  Q
    |||||||| |||||||| |||||  ||||||||| ||| |||| ||||| ||||| ||   | |||||||||||||||||||||||||||    
T  23887562 aaattgtc-ctgattgtgcactttgttagtcaaaatag-ccctgtcattaaaataattgtgtaatattgtcatattagtccttcaatata 23887649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 31142035 - 31142088
Alignment:
Q  85 aaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 138  Q
    |||||||||||| |||||||||||| ||| |||||||||| ||| |||| ||||    
T  31142035 aaatacttcattaatattgtcatatcagtacttcaatatatttacttattgtca 31142088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 18129947 - 18130007
Alignment:
Q  64 tcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatata 124  Q
    ||||| |||||||| ||||| ||||| ||   | |||||||||||||||||||||||||||    
T  18129947 tcaaaatagtccctgtcattaaaataattgtgtaatattgtcatattagtccttcaatata 18130007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 6 - 206
Target Start/End: Original strand, 17129 - 17327
Alignment:
Q  6 aaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtc 105  Q
    |||||||||  ||||||||| ||||||||||||||||| |||||||||||  | ||||||||| |||||| || |||| ||||||||| || ||||||||    
T  17129 aaaatagtctttcaatgtatcaaaattttaaattgtctttgattgtacacagcgttagtcaaaatagtccataacattaaaatacttcgttaatattgtc 17228  T
Q  106 atattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaatacagtgag 205  Q
    ||| ||||  |||||||||||||||||| |||||| ||||||| ||| ||||||  |  ||||||||||| ||  |||||||||| ||||||||| ||||    
T  17229 atactagtatttcaatatacttatttattgtcactacagggaccattttgacta--atggtacaaaatcagggcctattttagaattttaatacattgag 17326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 173
Target Start/End: Complemental strand, 5198095 - 5197982
Alignment:
Q  60 ttagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgacta 159  Q
    ||||||||| || || ||| |||| |||||||||||| ||||||||||||||||| |||||||||||||||||| ||  |||||||||||||| ||||||    
T  5198095 ttagtcaaaataatctctaacattaaaatacttcattaatattgtcatattagtctttcaatatacttatttattgttgcttcagggactattttgacta 5197996  T
Q  160 acaaagtacaaaat 173  Q
    ||||||| ||||||    
T  5197995 acaaagtgcaaaat 5197982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 8929689 - 8929505
Alignment:
Q  17 tcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtcc 115  Q
    ||||||||||||||||||||||| ||||| ||||||||| ||| ||||||||| || ||| || ||||  |||||||| || ||||| ||| |||||||     
T  8929689 tcaatgtattaaaattttaaatttgtctcagattgtacatttcgttagtcaaaataatccttaacattagaatacttcgttaatattatcaaattagtca 8929590  T
Q  116 ttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaataca 200  Q
    |||| ||||||||||||  |||| || | |||||||| ||||||||||||| ||||||||   | ||||||| || |||||||||    
T  8929589 ttcagtatacttatttactgtcatttaatggactattttgactaacaaagtgcaaaatcaaaaactattttaaaattttaataca 8929505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 25689190 - 25689001
Alignment:
Q  17 tcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtcct 116  Q
    ||||| ||||||||||||||||| ||||||||| |||| | ||||||||||| || ||  || ||||  |||||||| || ||||||||||||||  | |    
T  25689190 tcaatatattaaaattttaaattatctctgattatacattccattagtcaaaataatcattaacattagaatacttcgttaatattgtcatatta--cat 25689093  T
Q  117 tcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaatacagtgagaga 208  Q
    | |||||||||| ||||  ||| || |||||||||| | ||||||||||| ||||||||   |||||||||||| ||||||||| |||||||    
T  25689092 taaatatacttacttattatcatttaagggactattttaactaacaaagtgcaaaatcagaaattattttagaattttaatacattgagaga 25689001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 35 - 133
Target Start/End: Original strand, 32996306 - 32996404
Alignment:
Q  35 aaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatacttatttat 133  Q
    |||| |||||||||||||||||||||| || ||| ||||| |||  ||| || || ||  || ||||||||||||||||||||||||||||||||||||    
T  32996306 aaatagtctctgattgtacacttcatttgttaaaatagtctctaatattaaattaatttgttaatattgtcatattagtccttcaatatacttatttat 32996404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 18942778 - 18942962
Alignment:
Q  8 aatagtccatcaatgtattaaaattttaaattgtctctgat--tgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtc 105  Q
    |||||||  ||||||||| ||||||||||| | ||| ||||  ||| || ||| |||||| || ||||| ||| |||| |||||| || || ||||||||    
T  18942778 aatagtcactcaatgtatcaaaattttaaaatatctttgatcatgtgcatttcgttagtccaaatagtctctaacattaaaatacgtcgttaatattgtc 18942877  T
Q  106 atattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaa 190  Q
    |||||| || ||||||||||||| |||| |||| |||| ||| |||| ||| ||| ||| | ||||||||  || ||||||||||    
T  18942878 atattaatcattcaatatacttacttattgtcatttcatggattattttgattaataaaatgcaaaatcagagactattttagaa 18942962  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 5362338 - 5362411
Alignment:
Q  60 ttagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatacttatttat 133  Q
    ||||||||| ||||||||   ||| ||||||||| || |||| |||||||||||||||||||||||||||||||    
T  5362338 ttagtcaaaatagtccctgatattaaaatacttcgttaatatggtcatattagtccttcaatatacttatttat 5362411  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 34703670 - 34703795
Alignment:
Q  8 aatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcat 107  Q
    |||||||||||||||||| ||| ||| |||| |||||| ||||| |||||| ||  ||||| ||||| ||| | || ||||| ||  |  ||||||||||    
T  34703670 aatagtccatcaatgtatcaaattttaaaatagtctctaattgttcacttcgttgatcaaaatagtctctaactttaaaatattttgtcaatattgtcat 34703769  T
Q  108 attagtccttcaatatacttatttat 133  Q
    ||||||| |||| |||||||| ||||    
T  34703770 attagtctttcagtatacttacttat 34703795  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 1344462 - 1344509
Alignment:
Q  85 aaatacttcattgatattgtcatattagtccttcaatatacttattta 132  Q
    |||||||||||| ||||||||| || ||||||||||||||||||||||    
T  1344462 aaatacttcattaatattgtcacatcagtccttcaatatacttattta 1344509  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 3116911 - 3116962
Alignment:
Q  82 ttcaaatacttcattgatattgtcatattagtccttcaatatacttatttat 133  Q
    |||||||| |||||| ||||||||||||||||| ||||||||||||| ||||    
T  3116911 ttcaaatatttcattaatattgtcatattagtctttcaatatacttacttat 3116962  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 187
Target Start/End: Original strand, 30839838 - 30839940
Alignment:
Q  85 aaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattatt 184  Q
    ||||||||| || | |||||||||||||||||||| |||||||||||||  ||| || || ||||||| | ||||| ||| |  ||||||| ||| ||||    
T  30839838 aaatacttcgttaacattgtcatattagtccttcagtatacttatttattatcattttagagactattttaactaataaaatttaaaatcagggactatt 30839937  T
Q  185 tta 187  Q
    |||    
T  30839938 tta 30839940  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 40077720 - 40077598
Alignment:
Q  17 tcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtcct 116  Q
    ||||||||||||| ||| ||||  | ||| |||||| | || |||| | ||| ||||| ||| |||| ||||| ||  || ||||||| |||||||| ||    
T  40077720 tcaatgtattaaattttaaaataatatctaattgtatattttattaattaaaatagtctctaacattaaaatattttgttaatattgttatattagtact 40077621  T
Q  117 tcaatatacttatttatcgtcac 139  Q
    |||||||| ||||||||||||||    
T  40077620 tcaatatatttatttatcgtcac 40077598  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 38838507 - 38838698
Alignment:
Q  8 aatagtccatcaatgtattaaaatttt-aaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtca 106  Q
    ||||||||||| |||| |||||||||| |||| |||  ||||||| |||||   |||||||| |||||||||  ||| ||||| ||  || ||||| |||    
T  38838507 aatagtccatcgatgt-ttaaaattttaaaatagtccttgattgtgcacttttctagtcaaaatagtccctaatattaaaataatttgttaatattatca 38838605  T
Q  107 tattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaagtttaataca 200  Q
    | |||||| || ||||||||||    | ||| |||||||| ||||| ||||||||||| | ||||||||  || ||||||| || |||||||||    
T  38838606 tgttagtcttttaatatacttaccagttgtctcttcaggg-ctattttgactaacaaaatgcaaaatcagagactattttaaaattttaataca 38838698  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 138
Target Start/End: Complemental strand, 40355107 - 40355004
Alignment:
Q  35 aaattgtctctgattgtacacttcattagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatc 134  Q
    |||| |||||||||||| ||||   ||||||||| |||||  |  |||| ||| |||||||| |||||||||||||||| |||| |||||| || ||||     
T  40355107 aaatagtctctgattgtgcactatgttagtcaaaatagtcatttacattaaaacacttcattaatattgtcatattagttcttctatatacatacttatt 40355008  T
Q  135 gtca 138  Q
    ||||    
T  40355007 gtca 40355004  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 8062786 - 8062868
Alignment:
Q  61 tagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttca 143  Q
    |||||||| |||||| || |||| ||||| ||  || ||||||||||||||||| || |||||||||| | || |||||||||    
T  8062786 tagtcaaaatagtccataacattaaaataatttgttaatattgtcatattagtcttttaatatacttactcattgtcacttca 8062868  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 39608429 - 39608482
Alignment:
Q  80 cattcaaatacttcattgatattgtcatattagtccttcaatatacttatttat 133  Q
    |||| |||||||| ||| ||||||||||||||||| |||| |||||||| ||||    
T  39608429 cattaaaatacttgattaatattgtcatattagtcattcagtatacttacttat 39608482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 20628 - 20699
Alignment:
Q  59 attagtcaaattagtccctatcattcaaatacttcattgatattgtcatattagtccttcaatatacttatt 130  Q
    |||||||||| |||||  | | ||| ||||| |||||| ||||||||||||||||||||||||| |||||||    
T  20628 attagtcaaaatagtcattgttattaaaatatttcattaatattgtcatattagtccttcaatagacttatt 20699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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