View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0881_low_26 (Length: 304)

Name: NF0881_low_26
Description: NF0881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0881_low_26
NF0881_low_26
[»] scaffold0314 (11 HSPs)
scaffold0314 (74-254)||(3024-3204)
scaffold0314 (74-254)||(6538-6718)
scaffold0314 (75-254)||(3228-3407)
scaffold0314 (75-254)||(6742-6921)
scaffold0314 (74-206)||(2868-3000)
scaffold0314 (74-206)||(6382-6514)
scaffold0314 (74-188)||(2682-2796)
scaffold0314 (74-188)||(6196-6310)
scaffold0314 (199-254)||(3432-3487)
scaffold0314 (199-254)||(6946-7001)
scaffold0314 (199-231)||(1-33)
[»] chr4 (6 HSPs)
chr4 (75-232)||(13242969-13243129)
chr4 (74-206)||(14358341-14358473)
chr4 (79-249)||(13243381-13243554)
chr4 (86-229)||(13243184-13243330)
chr4 (74-188)||(14358155-14358269)
chr4 (209-254)||(13242902-13242947)


Alignment Details
Target: scaffold0314 (Bit Score: 177; Significance: 2e-95; HSPs: 11)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 74 - 254
Target Start/End: Complemental strand, 3204 - 3024
Alignment:
Q  74 catcatcacaataaacatcctccccatcacccatccaccccaaaaaagggccctattcagccaccgtctcaatcccccattccatataataacctagatc 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3204 catcatcacaataaacatcctccccatcacccatccaccccaaaaaagggccctattcagccaccgtctcaatcccccattccatataataacctagatc 3105  T
Q  174 atccacacattgaacgcagaccacgtcctcgtcacccacctaccccaacccctgctcctgctcatccaccatcttcctatg 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3104 atccacacattgaacgcagaccacgtcctcgtcacccacctaccccaacccctgctcctgcttatccaccatcttcctatg 3024  T

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Target: scaffold0314; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 74 - 254
Target Start/End: Complemental strand, 6718 - 6538
Alignment:
Q  74 catcatcacaataaacatcctccccatcacccatccaccccaaaaaagggccctattcagccaccgtctcaatcccccattccatataataacctagatc 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6718 catcatcacaataaacatcctccccatcacccatccaccccaaaaaagggccctattcagccaccgtctcaatcccccattccatataataacctagatc 6619  T
Q  174 atccacacattgaacgcagaccacgtcctcgtcacccacctaccccaacccctgctcctgctcatccaccatcttcctatg 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6618 atccacacattgaacgcagaccacgtcctcgtcacccacctaccccaacccctgctcctgcttatccaccatcttcctatg 6538  T

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Target: scaffold0314; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 75 - 254
Target Start/End: Complemental strand, 3407 - 3228
Alignment:
Q  75 atcatcacaataaacatcctccccatcacccatccaccccaaaaaagggccctattcagccaccgtctcaatcccccattccatataataacctagatca 174  Q
    ||||||| |||||||||||| ||||||||||| | ||||||| ||||| |||||||||||||||||||| |||||||||||||| ||| | |||||||||    
T  3407 atcatcataataaacatccttcccatcacccacctaccccaagaaaggcccctattcagccaccgtctccatcccccattccatctaagagcctagatca 3308  T
Q  175 tccacacattgaacgcagaccacgtcctcgtcacccacctaccccaacccctgctcctgctcatccaccatcttcctatg 254  Q
    ||||||||||||||||||||| | |||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  3307 tccacacattgaacgcagacctcatcctagtcacccacctaccccaacccctactcctgctcatccatcatcttcctatg 3228  T

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Target: scaffold0314; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 75 - 254
Target Start/End: Complemental strand, 6921 - 6742
Alignment:
Q  75 atcatcacaataaacatcctccccatcacccatccaccccaaaaaagggccctattcagccaccgtctcaatcccccattccatataataacctagatca 174  Q
    ||||||| |||||||||||| ||||||||||| | ||||||| ||||| |||||||||||||||||||| |||||||||||||| ||| | |||||||||    
T  6921 atcatcataataaacatccttcccatcacccacctaccccaagaaaggcccctattcagccaccgtctccatcccccattccatctaagagcctagatca 6822  T
Q  175 tccacacattgaacgcagaccacgtcctcgtcacccacctaccccaacccctgctcctgctcatccaccatcttcctatg 254  Q
    ||||||||||||||||||||| | |||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  6821 tccacacattgaacgcagacctcatcctagtcacccacctaccccaacccctactcctgctcatccatcatcttcctatg 6742  T

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Target: scaffold0314; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 206
Target Start/End: Complemental strand, 3000 - 2868
Alignment:
Q  74 catcatcacaataaacatcctccccatcacccatccaccccaaaaaagggccctattcagccaccgtctcaatcccccattccatataataacctagatc 173  Q
    ||||||||||||||||||||||||||||| ||| | |||||||  |||| ||||||||||||||||||   |||||| | ||||| || || ||||||||    
T  3000 catcatcacaataaacatcctccccatcatccacctaccccaagtaaggcccctattcagccaccgtcgtcatcccctactccatctagtagcctagatc 2901  T
Q  174 atccacacattgaacgcagaccacgtcctcgtc 206  Q
    | |||||||||||||||| ||  ||||||||||    
T  2900 aaccacacattgaacgcatacgtcgtcctcgtc 2868  T

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Target: scaffold0314; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 206
Target Start/End: Complemental strand, 6514 - 6382
Alignment:
Q  74 catcatcacaataaacatcctccccatcacccatccaccccaaaaaagggccctattcagccaccgtctcaatcccccattccatataataacctagatc 173  Q
    ||||||||||||||||||||||||||||| ||| | |||||||  |||| ||||||||||||||||||   |||||| | ||||| || || ||||||||    
T  6514 catcatcacaataaacatcctccccatcatccacctaccccaagtaaggcccctattcagccaccgtcgtcatcccctactccatctagtagcctagatc 6415  T
Q  174 atccacacattgaacgcagaccacgtcctcgtc 206  Q
    | |||||||||||||||| ||  ||||||||||    
T  6414 aaccacacattgaacgcatacgtcgtcctcgtc 6382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 2796 - 2682
Alignment:
Q  74 catcatcacaataaacatcctccccatcacccatccaccccaaaaaagggccctattcagccaccgtctcaatcccccattccatataataacctagatc 173  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||| | |||| ||||||||||||||  ||||| ||||| ||  ||    |||||||    
T  2796 catcatcacaataaacatcctccccatcacccatctaccccaataaatgcccctgttcagccaccgtcttcatccctcattctatccaacggtctagatc 2697  T
Q  174 atccacacattgaac 188  Q
    |||||||||||||||    
T  2696 atccacacattgaac 2682  T

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Target: scaffold0314; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 6310 - 6196
Alignment:
Q  74 catcatcacaataaacatcctccccatcacccatccaccccaaaaaagggccctattcagccaccgtctcaatcccccattccatataataacctagatc 173  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||   |||| ||||||||||||||  ||||| ||||| ||  ||    |||||||    
T  6310 catcatcacaataaacatcctccccatcacccatctaccccaagaaattcccctgttcagccaccgtcttcatccctcattctatccaacggtctagatc 6211  T
Q  174 atccacacattgaac 188  Q
    |||||||||||||||    
T  6210 atccacacattgaac 6196  T

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Target: scaffold0314; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 3487 - 3432
Alignment:
Q  199 tcctcgtcacccacctaccccaacccctgctcctgctcatccaccatcttcctatg 254  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3487 tcctcatcacccacctaccccaacccctgctcccgctcatccaccatcttcctatg 3432  T

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Target: scaffold0314; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 7001 - 6946
Alignment:
Q  199 tcctcgtcacccacctaccccaacccctgctcctgctcatccaccatcttcctatg 254  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7001 tcctcatcacccacctaccccaacccctgctcccgctcatccaccatcttcctatg 6946  T

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Target: scaffold0314; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 33 - 1
Alignment:
Q  199 tcctcgtcacccacctaccccaacccctgctcc 231  Q
    ||||| |||||||||||||||||||||||||||    
T  33 tcctcatcacccacctaccccaacccctgctcc 1  T

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Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 75 - 232
Target Start/End: Original strand, 13242969 - 13243129
Alignment:
Q  75 atcatcacaataaacatcctccccatcacccatccaccccaaaaaagggccctattcagccaccgtctcaatcccccattccatataataacctagatca 174  Q
    |||||||||| ||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||||||| ||| ||||||||||  || || |||||| |    
T  13242969 atcatcacaaaaaacatcctccccatcacccatctaccccaagaaaggcccctgttcagccaccgtctccatctcccattccatcaaacaatctagataa 13243068  T
Q  175 tccacacattgaacg---cagaccacgtcctcgtcacccacctaccccaacccctgctcct 232  Q
    |||||| ||||||||   || ||| | ||||| ||||||||||||||||||||||||||||    
T  13243069 tccacaaattgaacgccacaaacctcatcctcatcacccacctaccccaacccctgctcct 13243129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 74 - 206
Target Start/End: Complemental strand, 14358473 - 14358341
Alignment:
Q  74 catcatcacaataaacatcctccccatcacccatccaccccaaaaaagggccctattcagccaccgtctcaatcccccattccatataataacctagatc 173  Q
    ||||||||||||||||||||||||||||| ||| | |||||||  |||| ||||||||||| ||||||   |||||| | ||||| || || ||||||||    
T  14358473 catcatcacaataaacatcctccccatcatccacctaccccaagtaaggcccctattcagcaaccgtcgtcatcccctactccatctagtagcctagatc 14358374  T
Q  174 atccacacattgaacgcagaccacgtcctcgtc 206  Q
    | |||||||||||||||| ||  ||||||||||    
T  14358373 aaccacacattgaacgcatacgtcgtcctcgtc 14358341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 249
Target Start/End: Original strand, 13243381 - 13243554
Alignment:
Q  79 tcacaataaacatcctccccatcacccatccaccccaaaaaagggccctattcagccaccgtctcaatcccccattccatataataacctagatcatcca 178  Q
    |||||| ||||||| | ||||||||||||| ||||||| ||||| |||| |||| |||||||||| |||||||||| |||  ||||  |||||| |||||    
T  13243381 tcacaaaaaacatcgttcccatcacccatctaccccaagaaaggcccctgttcatccaccgtctccatcccccatttcatcaaatagtctagataatcca 13243480  T
Q  179 cacattgaa---cgcagaccacgtcctcgtcacccacctaccccaacccctgctcctgctcatccaccatcttc 249  Q
    || ||||||   || ||||  | ||||| ||||||||| ||||||||||||||||||  |||  ||||||||||    
T  13243481 caaattgaacgtcgtagacgtcttcctcatcacccaccaaccccaacccctgctcctattcaaacaccatcttc 13243554  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 229
Target Start/End: Original strand, 13243184 - 13243330
Alignment:
Q  86 aaacatcctccccatcacccatccaccccaaaaaagggccctattcagccaccgtctcaatcccccattccatataataacctagatcatccacacattg 185  Q
    ||||||| ||||||||||||||| | ||||| ||||  |||| |||| |||||||||| ||| ||||||||||  || || |||||| ||||||| ||||    
T  13243184 aaacatcgtccccatcacccatctagcccaagaaagacccctgttcatccaccgtctccatctcccattccatcaaacaatctagataatccacaaattg 13243283  T
Q  186 aacg---cagaccacgtcctcgtcacccacctaccccaacccctgct 229  Q
    ||||   || ||| | ||||| |||||||||||||||||||||||||    
T  13243284 aacgccacaaacctcatcctcatcacccacctaccccaacccctgct 13243330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 14358269 - 14358155
Alignment:
Q  74 catcatcacaataaacatcctccccatcacccatccaccccaaaaaagggccctattcagccaccgtctcaatcccccattccatataataacctagatc 173  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||   |||| ||||||||||||||  ||||| ||||| ||  ||    |||||||    
T  14358269 catcatcacaataaacatcctccccatcacccatctaccccaagaaatacccctgttcagccaccgtcttcatccctcattctatccaacggtctagatc 14358170  T
Q  174 atccacacattgaac 188  Q
    |||||||||||||||    
T  14358169 atccacacattgaac 14358155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 13242902 - 13242947
Alignment:
Q  209 ccacctaccccaacccctgctcctgctcatccaccatcttcctatg 254  Q
    ||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  13242902 ccacctaccccaacccctgctcctgttcaaccaccatcttcttatg 13242947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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