View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0881_low_27 (Length: 302)
Name: NF0881_low_27
Description: NF0881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0881_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 25 - 298
Target Start/End: Complemental strand, 44400939 - 44400660
Alignment:
| Q |
25 |
catcagaattttggtatctcatctacagaatcacccggctctgactctgactctga------tgaatatgataatactgacaatttggaccgaaggtgca |
118 |
Q |
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| T |
44400939 |
catcagaattttggtatctcatctacagaatcacccggctctgactctgactctgactctgatgaatatgataatactgacaatttggaccgaaggtgca |
44400840 |
T |
|
| Q |
119 |
taatatttattttttccaaatcagctcagatgccttctatctaaattttgactaataattttattttaacatcagcggtcgtcgaagaacgaaacctaag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44400839 |
taatatttattttttccaaatcagctcagatgccttctatctaaattttgactaataattttattttaacatcagcggtcgtcgaagaacgaaacctaag |
44400740 |
T |
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| Q |
219 |
cggtattcagagaacgagtttgttgaagaagtatcggattatgagccagagtttgacagcgatgatgatattgttggaga |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44400739 |
cggtattcagagaacgagtttgttgaagaagtatcggattatgagccagagtttgacagcgatgatgatattgttggaga |
44400660 |
T |
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