View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0881_low_4 (Length: 504)
Name: NF0881_low_4
Description: NF0881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0881_low_4 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 229 - 504
Target Start/End: Complemental strand, 39332612 - 39332339
Alignment:
| Q |
229 |
tacatattattattaattatttttactttgtataaggaaaaacaacctcaaataaataatgaatcatcatagtacttttgtcaacaaaataaaatcatag |
328 |
Q |
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| T |
39332612 |
tacatattattattaattatttttactttgtataaggaaaaacaacctcaaataaataatgaatcatcatagtacttttgtcaacaaaataaaatcatag |
39332513 |
T |
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| Q |
329 |
tactgtaacactataatagtagactagtagtatcagtcttataggataaataatggcctaattgtctaactgagatcactgattttgtcttgagaagttt |
428 |
Q |
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| T |
39332512 |
tactgtaacactataatagtagactagtagtatcagtct--taggataaataatggcctaattgtctaactgagatcactgattttgtcttgagaagttt |
39332415 |
T |
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| Q |
429 |
aaaatactaaacaaaatataatagaccaattaagttgactttcctagatgctgctcttgttagtccagtggtcttt |
504 |
Q |
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| T |
39332414 |
aaaatactaaacaaaatataatagaccaattaagttgactttcctagatgctgcttgtgttagtccagtggtcttt |
39332339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 495
Target Start/End: Complemental strand, 39343582 - 39343459
Alignment:
| Q |
370 |
taggataaataatggcctaattgtctaactgagatcactgattttgtcttgagaagtttaaaatactaaacaaaatataatagaccaattaagttgactt |
469 |
Q |
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| T |
39343582 |
taggaaaaacaatggtctaattacctaactgacatcattgattatgtcttgagaagcttaaaatactaaacaaaatat--ggaaccacttaagttgactt |
39343485 |
T |
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| Q |
470 |
tcctagatgctgctcttgttagtcca |
495 |
Q |
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| T |
39343484 |
tcttaggttctgcttgtgttagtcca |
39343459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 39332648 - 39332612
Alignment:
| Q |
137 |
catcatcactactaattaatgttcatatgtttatgct |
173 |
Q |
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| T |
39332648 |
catcatcactactaattaatgttcatatgtttatgct |
39332612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 269 - 304
Target Start/End: Complemental strand, 39357923 - 39357888
Alignment:
| Q |
269 |
aacaacctcaaataaataatgaatcatcatagtact |
304 |
Q |
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| T |
39357923 |
aacaacctcaaataaataatgaatcatcatagtact |
39357888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 481
Target Start/End: Original strand, 39570201 - 39570277
Alignment:
| Q |
403 |
atcactgattttgtcttgagaagtttaaaatactaaacaaaata--taatagaccaattaagttgactttcctagatgctg |
481 |
Q |
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|||| |||||||||||||||||||||||||||| | |||||||| |||| || |||||||||||||| ||||||||| |
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| T |
39570201 |
atcattgattttgtcttgagaagtttaaaataccatacaaaatacgtaat----cagttaagttgactttcttagatgctg |
39570277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 504
Target Start/End: Complemental strand, 39357810 - 39357761
Alignment:
| Q |
455 |
caattaagttgactttcctagatgctgctcttgttagtccagtggtcttt |
504 |
Q |
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| T |
39357810 |
caattaagttgactttcttagatgctgcttgtgttaatccagtgttcttt |
39357761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 350
Target Start/End: Complemental strand, 39357898 - 39357870
Alignment:
| Q |
322 |
atcatagtactgtaacactataatagtag |
350 |
Q |
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| T |
39357898 |
atcatagtactgtaacactataatagtag |
39357870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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