View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0881_low_44 (Length: 261)
Name: NF0881_low_44
Description: NF0881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0881_low_44 |
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| [»] scaffold0157 (1 HSPs) |
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Alignment Details
Target: scaffold0157 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 35443 - 35682
Alignment:
| Q |
1 |
tccaacaacaccaaccttcttctcagagcaaatatggggatcgtgtacctacacaaactccaacggtcaagtcagtaaacaatgtggatgataagctatt |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35443 |
tccaacaacaccaaccttcttctcagagcaaaaatggggatcgtgtacctgcacaaactccaacggtcaagtcagtaaacaacgtggatgataagctatt |
35542 |
T |
|
| Q |
101 |
tcaagtgagagtaagcatacatgagccaattcccctgagttagtcttattgtgtaggtttagggtttcggtccttgaacctttacctggactactgtcct |
200 |
Q |
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|| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35543 |
tcgggtgagagtaagcatacatgagccaatgcccttgagttagtcttattgtgtaggtttagggtttcggtccttgaacctttacctggactactgtcct |
35642 |
T |
|
| Q |
201 |
tatgggactattataagcaaattatgaggagatgatgatg |
240 |
Q |
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|||||||| |||||||||||||||||||||||| |||||| |
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| T |
35643 |
tatgggaccattataagcaaattatgaggagataatgatg |
35682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 12485034 - 12484795
Alignment:
| Q |
1 |
tccaacaacaccaaccttcttctcagagcaaatatggggatcgtgtacctacacaaactccaacggtcaagtcagtaaacaatgtggatgataagctatt |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12485034 |
tccaacaacaccaaccttcttctcagagcaaaaatggggatcgtgtacctgcacaaactccaacggtcaagtcagtaaacaacgtggatgataagctatt |
12484935 |
T |
|
| Q |
101 |
tcaagtgagagtaagcatacatgagccaattcccctgagttagtcttattgtgtaggtttagggtttcggtccttgaacctttacctggactactgtcct |
200 |
Q |
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| T |
12484934 |
tcgggtgagagtaagcatacatgagccaatgcccttgagttagtcttattgtgtaggtttagggtttcggtccttgaacctttacctggactactgtcct |
12484835 |
T |
|
| Q |
201 |
tatgggactattataagcaaattatgaggagatgatgatg |
240 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |||||| |
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| T |
12484834 |
tatgggaccattataagcaaattatgaggagataatgatg |
12484795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 12468910 - 12468671
Alignment:
| Q |
1 |
tccaacaacaccaaccttcttctcagagcaaatatggggatcgtgtacctacacaaactccaacggtcaagtcagtaaacaatgtggatgataagctatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||||| |||| | ||||||| |||||| ||||||| | |||| |||||| |||| |
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| T |
12468910 |
tccaacaacaccaaccttcttctcagggcaaatatggggatggtgtacctgcacacaatccaacgatcaagttagtaaacgacgtgggtgataacttatt |
12468811 |
T |
|
| Q |
101 |
tcaagtgagagtaagcatacatgagccaattcccctgagttagtcttattgtgtaggtttagggtttcggtccttgaacctttacctggactactgtcct |
200 |
Q |
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|| |||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| |
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| T |
12468810 |
tcgggtgagagtaagcatacttgagccaatgcccttgagttagtcttattgtgtaggtttagggttttggtccttgaacctttacctggaaaattgtcct |
12468711 |
T |
|
| Q |
201 |
tatgggactattataagcaaattatgaggagatgatgatg |
240 |
Q |
| |
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||||||| | ||||||||||||||||||||||||||| |
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| T |
12468710 |
catgggacctctgtaagcaaattatgaggagatgatgatg |
12468671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 12466270 - 12466036
Alignment:
| Q |
1 |
tccaacaacaccaaccttcttctcagagcaaatatggggatcgtgtacctacacaaactccaacggtcaagtcagtaaacaatgtggatgataagctatt |
100 |
Q |
| |
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|||| |||||||||| || || |||| |||||||||||||| |||||||| |||| | ||||||| |||||| ||||||| | ||| |||||| |||| |
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| T |
12466270 |
tccatcaacaccaacattttt-tcagggcaaatatggggatggtgtacctgcacacaatccaacgatcaagttagtaaacgacttgggtgataacgtatt |
12466172 |
T |
|
| Q |
101 |
tcaagtgagagtaagcatacatgagccaattcccctgagttagtcttattgtgtaggtttagggtttcggtccttgaacctttacctggactactgtcct |
200 |
Q |
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|| ||||||||||||||||| ||||||||| ||| |||||||||| || ||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
12466171 |
tcgagtgagagtaagcatacctgagccaatgcccttgagttagtcataatgtgtaggtttagggtttcggtccttgaacctttaccaggaaaactgtcct |
12466072 |
T |
|
| Q |
201 |
tatgggactattataagcaaattatgaggagatgat |
236 |
Q |
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||||||| | | ||||||||||||||||||||||| |
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| T |
12466071 |
catgggaccactgtaagcaaattatgaggagatgat |
12466036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 51264197 - 51264155
Alignment:
| Q |
146 |
ttattgtgtaggtttagggtttcggtccttgaacctttacctg |
188 |
Q |
| |
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|||| ||||||||||||| ||| |||||||||||||||||||| |
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| T |
51264197 |
ttatagtgtaggtttaggtttttggtccttgaacctttacctg |
51264155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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