View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0881_low_47 (Length: 255)

Name: NF0881_low_47
Description: NF0881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0881_low_47
NF0881_low_47
[»] chr4 (6 HSPs)
chr4 (50-247)||(41427121-41427318)
chr4 (180-222)||(23907247-23907289)
chr4 (180-237)||(435512-435569)
chr4 (57-102)||(1212120-1212165)
chr4 (57-102)||(39707886-39707931)
chr4 (180-237)||(53703890-53703947)
[»] chr1 (7 HSPs)
chr1 (50-102)||(46227110-46227162)
chr1 (185-236)||(51441714-51441765)
chr1 (57-102)||(32083558-32083603)
chr1 (180-237)||(37463807-37463864)
chr1 (180-237)||(43241326-43241383)
chr1 (58-102)||(34827900-34827944)
chr1 (180-228)||(49348339-49348387)
[»] chr7 (6 HSPs)
chr7 (180-237)||(36870269-36870326)
chr7 (180-237)||(46356796-46356853)
chr7 (50-101)||(38606463-38606514)
chr7 (180-237)||(11593233-11593290)
chr7 (180-237)||(39907324-39907381)
chr7 (180-228)||(49028570-49028618)
[»] chr2 (5 HSPs)
chr2 (50-102)||(13148746-13148798)
chr2 (179-237)||(24584550-24584608)
chr2 (57-102)||(38453431-38453476)
chr2 (180-228)||(37281394-37281442)
chr2 (180-228)||(45368570-45368618)
[»] chr5 (3 HSPs)
chr5 (180-237)||(24177804-24177861)
chr5 (50-99)||(23979659-23979708)
chr5 (180-228)||(1288534-1288582)
[»] chr3 (6 HSPs)
chr3 (180-237)||(38849374-38849431)
chr3 (57-102)||(9258310-9258355)
chr3 (180-237)||(52138108-52138165)
chr3 (180-228)||(19736504-19736552)
chr3 (58-102)||(26592254-26592298)
chr3 (58-102)||(48221205-48221249)
[»] scaffold0286 (1 HSPs)
scaffold0286 (50-102)||(307-359)
[»] chr6 (5 HSPs)
chr6 (50-102)||(2208208-2208260)
chr6 (180-228)||(5260193-5260241)
chr6 (180-237)||(6082680-6082737)
chr6 (57-102)||(9706199-9706244)
chr6 (58-102)||(2680864-2680908)
[»] scaffold0018 (1 HSPs)
scaffold0018 (180-237)||(30748-30805)
[»] chr8 (3 HSPs)
chr8 (57-102)||(15216085-15216130)
chr8 (180-237)||(36566186-36566243)
chr8 (180-220)||(39706872-39706912)
[»] scaffold0606 (1 HSPs)
scaffold0606 (64-100)||(9094-9130)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 50 - 247
Target Start/End: Complemental strand, 41427318 - 41427121
Alignment:
Q  50 catcttagtgctaactcttggacgtgttttgtaagtacttccaaaactaaagtnnnnnnnnntaagagctaatggttgacactcggtgcattcctattgt 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||| |||||||||    
T  41427318 catcttagtgctaactcttggacgtgttttgtaagtacttccaaaactaaagtaaaaaaaaataagagctaatggttgacactcggtgcaatcctattgt 41427219  T
Q  150 tatgaaaaaatcgtcgggaaccccatgatgtagttgaagctccctcatacatatccttgatggctcaaatataagcaattgtaaccccctttcatctc 247  Q
    |||| |||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  41427218 tatggaaaaatcgtcgggaacccaatgatgtagttgaatctccctcatacatatctttgatagctcaaatataagcaattgtaaccccctttcatctc 41427121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 23907247 - 23907289
Alignment:
Q  180 tagttgaagctccctcatacatatccttgatggctcaaatata 222  Q
    |||| |||||||||||||||||||||||||| |||| ||||||    
T  23907247 tagtcgaagctccctcatacatatccttgatagctctaatata 23907289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 435569 - 435512
Alignment:
Q  180 tagttgaagctccctcatacatatccttgatggctcaaatataagcaattgtaacccc 237  Q
    |||| |||||||||||||||||||||||||| || | |||||| |||||  |||||||    
T  435569 tagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccc 435512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 1212120 - 1212165
Alignment:
Q  57 gtgctaactcttggacgtgttttgtaagtacttccaaaactaaagt 102  Q
    |||||||||||| || ||||| ||||||||| ||||||||||||||    
T  1212120 gtgctaactcttagatgtgttatgtaagtacatccaaaactaaagt 1212165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 39707931 - 39707886
Alignment:
Q  57 gtgctaactcttggacgtgttttgtaagtacttccaaaactaaagt 102  Q
    |||| |||||||||| ||||| ||||||||| ||||||||||||||    
T  39707931 gtgcaaactcttggatgtgttctgtaagtacatccaaaactaaagt 39707886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 53703947 - 53703890
Alignment:
Q  180 tagttgaagctccctcatacatatccttgatggctcaaatataagcaattgtaacccc 237  Q
    |||| |||||||||||||||||||||||||| || | |||||| |||||  |||||||    
T  53703947 tagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccc 53703890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 46227110 - 46227162
Alignment:
Q  50 catcttagtgctaactcttggacgtgttttgtaagtacttccaaaactaaagt 102  Q
    |||||| |||||||||||||||||||||| |||||||| ||||||||||||||    
T  46227110 catcttggtgctaactcttggacgtgtttcgtaagtacatccaaaactaaagt 46227162  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 51441714 - 51441765
Alignment:
Q  185 gaagctccctcatacatatccttgatggctcaaatataagcaattgtaaccc 236  Q
    |||||||||||||||||||||||||| || | |||||| |||||| ||||||    
T  51441714 gaagctccctcatacatatccttgatagccctaatataggcaattctaaccc 51441765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 32083558 - 32083603
Alignment:
Q  57 gtgctaactcttggacgtgttttgtaagtacttccaaaactaaagt 102  Q
    ||||||||||||||| ||||| ||| ||||| ||||||||||||||    
T  32083558 gtgctaactcttggatgtgttctgtcagtacatccaaaactaaagt 32083603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 37463807 - 37463864
Alignment:
Q  180 tagttgaagctccctcatacatatccttgatggctcaaatataagcaattgtaacccc 237  Q
    |||||| |||||||||||||| ||||||||| |||| | ||||||||||  |||||||    
T  37463807 tagttgcagctccctcatacacatccttgatagctctagtataagcaatcctaacccc 37463864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 43241326 - 43241383
Alignment:
Q  180 tagttgaagctccctcatacatatccttgatggctcaaatataagcaattgtaacccc 237  Q
    |||| |||||||||||||||||||||||||| || | |||||| |||||  |||||||    
T  43241326 tagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccc 43241383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 34827900 - 34827944
Alignment:
Q  58 tgctaactcttggacgtgttttgtaagtacttccaaaactaaagt 102  Q
    |||||||||||||| ||||| |||||| || ||||||||||||||    
T  34827900 tgctaactcttggatgtgttatgtaagaacatccaaaactaaagt 34827944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 49348339 - 49348387
Alignment:
Q  180 tagttgaagctccctcatacatatccttgatggctcaaatataagcaat 228  Q
    |||| |||||||||||||||||||||||||| || | |||||| |||||    
T  49348339 tagtcgaagctccctcatacatatccttgatagccctaatataggcaat 49348387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 36870269 - 36870326
Alignment:
Q  180 tagttgaagctccctcatacatatccttgatggctcaaatataagcaattgtaacccc 237  Q
    |||||||||||||||||||||||||||||||| ||| |||||| |||||  |||||||    
T  36870269 tagttgaagctccctcatacatatccttgatgactctaatataggcaatcctaacccc 36870326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 46356796 - 46356853
Alignment:
Q  180 tagttgaagctccctcatacatatccttgatggctcaaatataagcaattgtaacccc 237  Q
    |||| |||||||||||||||||||||||||| || | |||||| |||||| |||||||    
T  46356796 tagtcgaagctccctcatacatatccttgatagccctaatataggcaattctaacccc 46356853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 38606514 - 38606463
Alignment:
Q  50 catcttagtgctaactcttggacgtgttttgtaagtacttccaaaactaaag 101  Q
    |||||| ||||||||||||||| ||||| ||| ||||| |||||||||||||    
T  38606514 catcttggtgctaactcttggatgtgttctgtcagtacatccaaaactaaag 38606463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 11593290 - 11593233
Alignment:
Q  180 tagttgaagctccctcatacatatccttgatggctcaaatataagcaattgtaacccc 237  Q
    |||| |||||||||||||||||||||||||| || | |||||| |||||  |||||||    
T  11593290 tagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccc 11593233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 39907324 - 39907381
Alignment:
Q  180 tagttgaagctccctcatacatatccttgatggctcaaatataagcaattgtaacccc 237  Q
    |||| |||||||||||||||||||||||||| || | |||||| |||||  |||||||    
T  39907324 tagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccc 39907381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 49028618 - 49028570
Alignment:
Q  180 tagttgaagctccctcatacatatccttgatggctcaaatataagcaat 228  Q
    |||| |||||||||||||||||||||||||| || | |||||| |||||    
T  49028618 tagtcgaagctccctcatacatatccttgatagccctaatataggcaat 49028570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 13148798 - 13148746
Alignment:
Q  50 catcttagtgctaactcttggacgtgttttgtaagtacttccaaaactaaagt 102  Q
    ||||||||||||| |||||||| ||||| ||||||||| ||||||||||||||    
T  13148798 catcttagtgctagctcttggatgtgttctgtaagtacatccaaaactaaagt 13148746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 24584550 - 24584608
Alignment:
Q  179 gtagttgaagctccctcatacatatccttgatggctcaaatataagcaattgtaacccc 237  Q
    ||||| |||||||||||||||||||||||||| ||||  ||||| |||||  |||||||    
T  24584550 gtagtcgaagctccctcatacatatccttgatagctctgatataggcaatcctaacccc 24584608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 38453431 - 38453476
Alignment:
Q  57 gtgctaactcttggacgtgttttgtaagtacttccaaaactaaagt 102  Q
    ||||||||||||||| ||||||||| | ||| ||||||||||||||    
T  38453431 gtgctaactcttggatgtgttttgtcaatacatccaaaactaaagt 38453476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 37281442 - 37281394
Alignment:
Q  180 tagttgaagctccctcatacatatccttgatggctcaaatataagcaat 228  Q
    ||||||||||||||| ||||||||||||||| | || ||||||| ||||    
T  37281442 tagttgaagctcccttatacatatccttgatagttctaatataatcaat 37281394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 45368570 - 45368618
Alignment:
Q  180 tagttgaagctccctcatacatatccttgatggctcaaatataagcaat 228  Q
    |||| |||||||||||||||||||||| ||| |||| |||||| |||||    
T  45368570 tagtcgaagctccctcatacatatcctggatagctctaatataggcaat 45368618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 24177861 - 24177804
Alignment:
Q  180 tagttgaagctccctcatacatatccttgatggctcaaatataagcaattgtaacccc 237  Q
    |||| |||||||||||||||||||||||||| |||| |||||| |||||  |||||||    
T  24177861 tagtcgaagctccctcatacatatccttgatagctctaatataggcaatgctaacccc 24177804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 23979708 - 23979659
Alignment:
Q  50 catcttagtgctaactcttggacgtgttttgtaagtacttccaaaactaa 99  Q
    |||||||||  || || ||||| |||||||||||||||||||||||||||    
T  23979708 catcttagttatagctattggatgtgttttgtaagtacttccaaaactaa 23979659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 1288534 - 1288582
Alignment:
Q  180 tagttgaagctccctcatacatatccttgatggctcaaatataagcaat 228  Q
    |||| |||||||||||||||||||||||||| || | |||||| |||||    
T  1288534 tagtcgaagctccctcatacatatccttgatagccctaatataggcaat 1288582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 38849431 - 38849374
Alignment:
Q  180 tagttgaagctccctcatacatatccttgatggctcaaatataagcaattgtaacccc 237  Q
    |||| |||||||||||||||||||||||||| |||| |||||| |||||  |||||||    
T  38849431 tagtcgaagctccctcatacatatccttgatagctctaatataggcaatcataacccc 38849374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 9258355 - 9258310
Alignment:
Q  57 gtgctaactcttggacgtgttttgtaagtacttccaaaactaaagt 102  Q
    ||||||||||||||| |||||  |||||||| ||||||||||||||    
T  9258355 gtgctaactcttggatgtgttccgtaagtacatccaaaactaaagt 9258310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 52138165 - 52138108
Alignment:
Q  180 tagttgaagctccctcatacatatccttgatggctcaaatataagcaattgtaacccc 237  Q
    |||| |||||||||||||||||||||||||| || | |||||| |||||  |||||||    
T  52138165 tagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccc 52138108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 19736552 - 19736504
Alignment:
Q  180 tagttgaagctccctcatacatatccttgatggctcaaatataagcaat 228  Q
    |||| |||||||||||||||||||||||||| |||| || |||| ||||    
T  19736552 tagtcgaagctccctcatacatatccttgatagctctaacataaacaat 19736504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 26592254 - 26592298
Alignment:
Q  58 tgctaactcttggacgtgttttgtaagtacttccaaaactaaagt 102  Q
    |||||||||||||||||||| ||||||||| ||| ||| ||||||    
T  26592254 tgctaactcttggacgtgttctgtaagtacatcccaaagtaaagt 26592298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 48221249 - 48221205
Alignment:
Q  58 tgctaactcttggacgtgttttgtaagtacttccaaaactaaagt 102  Q
    |||||||||||||| |||||||| |||||| || |||||||||||    
T  48221249 tgctaactcttggatgtgttttgcaagtacatctaaaactaaagt 48221205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 307 - 359
Alignment:
Q  50 catcttagtgctaactcttggacgtgttttgtaagtacttccaaaactaaagt 102  Q
    |||||| ||||||||||||||| |||||  |||||||| ||||||||||||||    
T  307 catcttggtgctaactcttggatgtgttccgtaagtacatccaaaactaaagt 359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 2208208 - 2208260
Alignment:
Q  50 catcttagtgctaactcttggacgtgttttgtaagtacttccaaaactaaagt 102  Q
    |||||| ||||||||||||||| |||||  |||||||| ||||||||||||||    
T  2208208 catcttggtgctaactcttggatgtgttccgtaagtacatccaaaactaaagt 2208260  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 5260193 - 5260241
Alignment:
Q  180 tagttgaagctccctcatacatatccttgatggctcaaatataagcaat 228  Q
    |||||||||||||||||||||||||||  || |||| ||||||||||||    
T  5260193 tagttgaagctccctcatacatatcctatatagctctaatataagcaat 5260241  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 6082737 - 6082680
Alignment:
Q  180 tagttgaagctccctcatacatatccttgatggctcaaatataagcaattgtaacccc 237  Q
    |||| |||||||||||||||||||||||||| | || |||||| |||||  |||||||    
T  6082737 tagtcgaagctccctcatacatatccttgatagttctaatataggcaatcctaacccc 6082680  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 9706244 - 9706199
Alignment:
Q  57 gtgctaactcttggacgtgttttgtaagtacttccaaaactaaagt 102  Q
    ||||||||||||||| |||||| || ||||| ||||||||||||||    
T  9706244 gtgctaactcttggatgtgtttcgtcagtacatccaaaactaaagt 9706199  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 2680864 - 2680908
Alignment:
Q  58 tgctaactcttggacgtgttttgtaagtacttccaaaactaaagt 102  Q
    ||||||| |||||| ||||| ||||||||| ||||||||||||||    
T  2680864 tgctaacacttggatgtgttatgtaagtacatccaaaactaaagt 2680908  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 30805 - 30748
Alignment:
Q  180 tagttgaagctccctcatacatatccttgatggctcaaatataagcaattgtaacccc 237  Q
    |||| |||||||||||||||||||||||||| || | |||||| |||||  |||||||    
T  30805 tagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccc 30748  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 15216085 - 15216130
Alignment:
Q  57 gtgctaactcttggacgtgttttgtaagtacttccaaaactaaagt 102  Q
    ||||||||||||||| ||||| ||| ||||| ||||||||||||||    
T  15216085 gtgctaactcttggatgtgttctgtcagtacatccaaaactaaagt 15216130  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 36566186 - 36566243
Alignment:
Q  180 tagttgaagctccctcatacatatccttgatggctcaaatataagcaattgtaacccc 237  Q
    |||| |||||||||||||||||||||||||| || | |||||| |||||  |||||||    
T  36566186 tagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccc 36566243  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 39706912 - 39706872
Alignment:
Q  180 tagttgaagctccctcatacatatccttgatggctcaaata 220  Q
    ||||||||||||||||||||||||| ||||| |||| ||||    
T  39706912 tagttgaagctccctcatacatatctttgatagctctaata 39706872  T

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Target: scaffold0606 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 9130 - 9094
Alignment:
Q  64 ctcttggacgtgttttgtaagtacttccaaaactaaa 100  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  9130 ctcttggatgtgttttgtaagtacatccaaaactaaa 9094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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