View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0881_low_51 (Length: 251)
Name: NF0881_low_51
Description: NF0881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0881_low_51 |
 | |
|
| [»] chr6 (6 HSPs) |
| |
|
| [»] chr7 (6 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] scaffold0045 (1 HSPs) |
| | |
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| [»] scaffold0510 (1 HSPs) |
| |
|
| [»] scaffold0053 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 4023355 - 4023582
Alignment:
| Q |
24 |
tcatcagatgttacatcatgagtgacccaaagccggaaaaaggaaaacaagcctcatcttctcaggcacatcatccacaatcaaggtccgaaccatttca |
123 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4023355 |
tcatcagacgttacatcatgagtgacccaaagccggaaaaaggaaaacaagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttca |
4023454 |
T |
|
| Q |
124 |
gatgccaaccacaactacctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaactgtgct |
223 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4023455 |
gatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgct |
4023554 |
T |
|
| Q |
224 |
aatacttatcttcagtagtctcaatatt |
251 |
Q |
| |
|
||||||||||||||| ||||||| |||| |
|
|
| T |
4023555 |
aatacttatcttcagcagtctcagtatt |
4023582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 4715256 - 4715483
Alignment:
| Q |
24 |
tcatcagatgttacatcatgagtgacccaaagccggaaaaaggaaaacaagcctcatcttctcaggcacatcatccacaatcaaggtccgaaccatttca |
123 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4715256 |
tcatcagacgttacatcatgagtgacccaaagccggaaaaaggaaaacaagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttca |
4715355 |
T |
|
| Q |
124 |
gatgccaaccacaactacctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaactgtgct |
223 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4715356 |
gatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgct |
4715455 |
T |
|
| Q |
224 |
aatacttatcttcagtagtctcaatatt |
251 |
Q |
| |
|
||||||||||||||| ||||||| |||| |
|
|
| T |
4715456 |
aatacttatcttcagcagtctcagtatt |
4715483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 7066402 - 7066629
Alignment:
| Q |
24 |
tcatcagatgttacatcatgagtgacccaaagccggaaaaaggaaaacaagcctcatcttctcaggcacatcatccacaatcaaggtccgaaccatttca |
123 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7066402 |
tcatcagacgttacatcatgagtgacccaaagccggaaaaaggaaaacaagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttca |
7066501 |
T |
|
| Q |
124 |
gatgccaaccacaactacctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaactgtgct |
223 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7066502 |
gatgccaatcacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctgggagctacaaactgtgct |
7066601 |
T |
|
| Q |
224 |
aatacttatcttcagtagtctcaatatt |
251 |
Q |
| |
|
||||||||||||||| ||||||| |||| |
|
|
| T |
7066602 |
aatacttatcttcagcagtctcagtatt |
7066629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 4735062 - 4735289
Alignment:
| Q |
24 |
tcatcagatgttacatcatgagtgacccaaagccggaaaaaggaaaacaagcctcatcttctcaggcacatcatccacaatcaaggtccgaaccatttca |
123 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4735062 |
tcatcagacgttacatcatgagtgacccaaagccggaaaaaggaaaacaagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttca |
4735161 |
T |
|
| Q |
124 |
gatgccaaccacaactacctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaactgtgct |
223 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||| |
|
|
| T |
4735162 |
gatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatactggaacctacaaaccatgct |
4735261 |
T |
|
| Q |
224 |
aatacttatcttcagtagtctcaatatt |
251 |
Q |
| |
|
||||||||||||||| ||||||| |||| |
|
|
| T |
4735262 |
aatacttatcttcagcagtctcagtatt |
4735289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 4709646 - 4709873
Alignment:
| Q |
24 |
tcatcagatgttacatcatgagtgacccaaagccggaaaaaggaaaacaagcctcatcttctcaggcacatcatccacaatcaaggtccgaaccatttca |
123 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4709646 |
tcatcagacgttacatcatgagtgacccaaagccggaaaaaggaaaacaatcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttca |
4709745 |
T |
|
| Q |
124 |
gatgccaaccacaactacctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaactgtgct |
223 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||| |
|
|
| T |
4709746 |
gatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatactggaacctacaaaccatgct |
4709845 |
T |
|
| Q |
224 |
aatacttatcttcagtagtctcaatatt |
251 |
Q |
| |
|
||||||||||||||| ||||||| |||| |
|
|
| T |
4709846 |
aatacttatcttcagcagtctcagtatt |
4709873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 34652186 - 34652083
Alignment:
| Q |
143 |
tttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaactgtgctaatacttatcttcagtagt |
242 |
Q |
| |
|
||||||||| | |||| | ||||||||||||||||||||||||||||||| ||||| |||||||| || || ||| |||||||||| ||||||||| ||| |
|
|
| T |
34652186 |
tttgacttttcaagcttcgctcaatggcaataccagtgccatacccatacatggaacatgctggacgcaaccaaccgtgctaatacatatcttcagcagt |
34652087 |
T |
|
| Q |
243 |
ctca |
246 |
Q |
| |
|
|||| |
|
|
| T |
34652086 |
ctca |
34652083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 8189611 - 8189838
Alignment:
| Q |
24 |
tcatcagatgttacatcatgagtgacccaaagccggaaaaaggaaaacaagcctcatcttctcaggcacatcatccacaatcaaggtccgaaccatttca |
123 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8189611 |
tcatcagacgttacatcatgagtgacccaaagccggaaaaaggaaaacaaacctcatcttctcaggcacatcatccacaatcagggtccgaaccatttca |
8189710 |
T |
|
| Q |
124 |
gatgccaaccacaactacctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaactgtgct |
223 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8189711 |
gatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgct |
8189810 |
T |
|
| Q |
224 |
aatacttatcttcagtagtctcaatatt |
251 |
Q |
| |
|
||||||||||||||| ||||||| |||| |
|
|
| T |
8189811 |
aatacttatcttcagcagtctcagtatt |
8189838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 14291215 - 14290988
Alignment:
| Q |
24 |
tcatcagatgttacatcatgagtgacccaaagccggaaaaaggaaaacaagcctcatcttctcaggcacatcatccacaatcaaggtccgaaccatttca |
123 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14291215 |
tcatcagacgttacatcatgagtgacccaaagccggaaaaaggaaaacaagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttca |
14291116 |
T |
|
| Q |
124 |
gatgccaaccacaactacctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaactgtgct |
223 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14291115 |
gatgccaaccacaactgcctttgactttgccagctacacacaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgct |
14291016 |
T |
|
| Q |
224 |
aatacttatcttcagtagtctcaatatt |
251 |
Q |
| |
|
||||||||||||||| ||||||| |||| |
|
|
| T |
14291015 |
aatacttatcttcagcagtctcagtatt |
14290988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 15944567 - 15944433
Alignment:
| Q |
24 |
tcatcagatgttacatcatgagtgacccaaagccggaaaaaggaaaacaagcctcatcttctcaggcacatcatccacaatcaaggtccgaaccatttca |
123 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| || || ||||||||||||| |
|
|
| T |
15944567 |
tcatcagacgttacatcatgagtgacccaaagaaggaaaaaggaaaacaagcctcatcttctcaggcaccgcacccacacccagggcccgaaccatttca |
15944468 |
T |
|
| Q |
124 |
gatgccaaccacaactacctttgactttgccagct |
158 |
Q |
| |
|
| ||| |||| ||| |||| |||||||| |||| |
|
|
| T |
15944467 |
aaccccatccacgactgccttcgactttgcaagct |
15944433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 48350367 - 48350470
Alignment:
| Q |
143 |
tttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaactgtgctaatacttatcttcagtagt |
242 |
Q |
| |
|
||||||||| | |||| | ||||||||||||||||||||||||||||||| ||||| |||||||| || || ||| |||||||||| ||||||||| ||| |
|
|
| T |
48350367 |
tttgacttttcaagcttcgctcaatggcaataccagtgccatacccatacatggaacatgctggacgcaaccaaccgtgctaatacatatcttcagcagt |
48350466 |
T |
|
| Q |
243 |
ctca |
246 |
Q |
| |
|
|||| |
|
|
| T |
48350467 |
ctca |
48350470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 159
Target Start/End: Complemental strand, 1944105 - 1944008
Alignment:
| Q |
62 |
aaaggaaaacaagcctcatcttctcaggcacatcatccacaatcaaggtccgaaccatttcagatgccaaccacaactacctttgactttgccagcta |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| || || ||||||||||||||| ||| |||| || |||| |||||||| ||||| |
|
|
| T |
1944105 |
aaaggaaaacaagcctcatcttctcaggcaccgcacccacacccagggcccgaaccatttcagaccccatccacggctgccttcgactttgcaagcta |
1944008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 1945920 - 1945983
Alignment:
| Q |
62 |
aaaggaaaacaagcctcatcttctcaggcacatcatccacaatcaaggtccgaaccatttcaga |
125 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || ||||| || || ||||||||||||||| |
|
|
| T |
1945920 |
aaaggcaaacaagcctcatcttctcaggcaccgcacccacacccagggcccgaaccatttcaga |
1945983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 2161104 - 2160877
Alignment:
| Q |
24 |
tcatcagatgttacatcatgagtgacccaaagccggaaaaaggaaaacaagcctcatcttctcaggcacatcatccacaatcaaggtccgaaccatttca |
123 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2161104 |
tcatcagacgttacatcatgagtgacccaaagccggaaaaaggaaaacaagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttca |
2161005 |
T |
|
| Q |
124 |
gatgccaaccacaactacctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaactgtgct |
223 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2161004 |
gatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgct |
2160905 |
T |
|
| Q |
224 |
aatacttatcttcagtagtctcaatatt |
251 |
Q |
| |
|
||||||||||||||| || |||| |||| |
|
|
| T |
2160904 |
aatacttatcttcagcagcctcagtatt |
2160877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 34837970 - 34838197
Alignment:
| Q |
24 |
tcatcagatgttacatcatgagtgacccaaagccggaaaaaggaaaacaagcctcatcttctcaggcacatcatccacaatcaaggtccgaaccatttca |
123 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34837970 |
tcatcagacgttacatcatgagtgacccaaagccggaaaaaggaaaacaagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttca |
34838069 |
T |
|
| Q |
124 |
gatgccaaccacaactacctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaactgtgct |
223 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34838070 |
gatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccataaccatacttggaatatgctggaagctacaaaccgtgct |
34838169 |
T |
|
| Q |
224 |
aatacttatcttcagtagtctcaatatt |
251 |
Q |
| |
|
||||||||||||||| ||||||| |||| |
|
|
| T |
34838170 |
aatacttatcttcagcagtctcagtatt |
34838197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 45019287 - 45019060
Alignment:
| Q |
24 |
tcatcagatgttacatcatgagtgacccaaagccggaaaaaggaaaacaagcctcatcttctcaggcacatcatccacaatcaaggtccgaaccatttca |
123 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
45019287 |
tcatcagacgttacatcatgagtgacccaaagaaggaaaaaggaaaacaagcctcatcttctcaggcacatcatccacaatcagggtctgaaccatttca |
45019188 |
T |
|
| Q |
124 |
gatgccaaccacaactacctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaactgtgct |
223 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45019187 |
gatgccaaccacaactgccttcgactttgccagctacacacaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgct |
45019088 |
T |
|
| Q |
224 |
aatacttatcttcagtagtctcaatatt |
251 |
Q |
| |
|
||||||||||||||| ||||||| |||| |
|
|
| T |
45019087 |
aatacttatcttcagcagtctcagtatt |
45019060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 39056562 - 39056665
Alignment:
| Q |
143 |
tttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaactgtgctaatacttatcttcagtagt |
242 |
Q |
| |
|
||||||||| | |||| | ||||||||||||||||||||||||||||||| ||||| |||||||| || || ||| |||||||||| ||||||||| ||| |
|
|
| T |
39056562 |
tttgacttttcaagcttcgctcaatggcaataccagtgccatacccatacatggaacatgctggacgcaaccaaccgtgctaatacatatcttcagcagt |
39056661 |
T |
|
| Q |
243 |
ctca |
246 |
Q |
| |
|
|||| |
|
|
| T |
39056662 |
ctca |
39056665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 225
Target Start/End: Complemental strand, 35087449 - 35087299
Alignment:
| Q |
75 |
cctcatcttctcaggcacatcatccacaatcaaggtccgaaccatttcagatgccaaccacaactacctttgactttgccagctacactcaatggcaata |
174 |
Q |
| |
|
|||| ||||||||||||| ||||||||| || || |||||||||||||||| ||| ||| || |||| ||||||||||||||| | |||||||| | |
|
|
| T |
35087449 |
cctcctcttctcaggcaccgcatccacaaccagggcccgaaccatttcagattccatccatggctgccttcgactttgccagctacgcataatggcaaca |
35087350 |
T |
|
| Q |
175 |
ccagtgccatacccatacttggaatatgctggaagctacaaactgtgctaa |
225 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||| || || ||| ||||||| |
|
|
| T |
35087349 |
ttagtgccatactcatacatggaacatgctggaggcaactaaccgtgctaa |
35087299 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 41302371 - 41302484
Alignment:
| Q |
138 |
ctacctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaactgtgctaatacttatcttca |
237 |
Q |
| |
|
|||| |||||| |||| |||| | ||||||||||||||||||||||||| ||| | ||||| |||||||| | || ||| |||||||||| |||||||| |
|
|
| T |
41302371 |
ctacttttgacgttgcaagcttcgctcaatggcaataccagtgccatactcatgcatggaacatgctggactcaactaaccgtgctaatacatatcttca |
41302470 |
T |
|
| Q |
238 |
gtagtctcaatatt |
251 |
Q |
| |
|
| ||||||| |||| |
|
|
| T |
41302471 |
gcagtctcagtatt |
41302484 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 62 - 206
Target Start/End: Original strand, 5885 - 6029
Alignment:
| Q |
62 |
aaaggaaaacaagcctcatcttctcaggcacatcatccacaatcaaggtccgaaccatttcagatgccaaccacaactacctttgactttgccagctaca |
161 |
Q |
| |
|
||||| ||||| ||||| |||||||||||| ||||||||| || ||||||||||||||||||| ||| |||| ||| |||| |||||| |||||||| |
|
|
| T |
5885 |
aaaggcaaacatgcctcttcttctcaggcaacacatccacaaccagggtccgaaccatttcagattccacccacgactgccttcgacttttccagctacg |
5984 |
T |
|
| Q |
162 |
ctcaatggcaataccagtgccatacccatacttggaatatgctgg |
206 |
Q |
| |
|
| ||||||||| | ||||||||||| || |||||||| ||||||| |
|
|
| T |
5985 |
cacaatggcaacatcagtgccatactcacacttggaacatgctgg |
6029 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 9573840 - 9573943
Alignment:
| Q |
143 |
tttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaactgtgctaatacttatcttcagtagt |
242 |
Q |
| |
|
||||||||||| |||| | ||||||||||||||||||||||||||||||| ||||| |||||||| || || ||| |||||||||| ||||||||| ||| |
|
|
| T |
9573840 |
tttgactttgcaagcttcgctcaatggcaataccagtgccatacccatacatggaacatgctggacgcaaccaaccgtgctaatacatatcttcagcagt |
9573939 |
T |
|
| Q |
243 |
ctca |
246 |
Q |
| |
|
|||| |
|
|
| T |
9573940 |
ctca |
9573943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 9573708 - 9573758
Alignment:
| Q |
35 |
tacatcatgagtgacccaaagccggaaaaaggaaaacaagcctcatcttct |
85 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
9573708 |
tacatcatgagtgacccaaagccggataaaggcaaacaagcatcatcttct |
9573758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 2963283 - 2963180
Alignment:
| Q |
143 |
tttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaactgtgctaatacttatcttcagtagt |
242 |
Q |
| |
|
||||||||| | |||| | ||||||||||||||||||||||||||||||| ||||| |||||||| || || ||| |||||||||| ||||||||| ||| |
|
|
| T |
2963283 |
tttgacttttcaagcttcgctcaatggcaataccagtgccatacccatacatggaacatgctggacgcaaccaaccgtgctaatacatatcttcagcagt |
2963184 |
T |
|
| Q |
243 |
ctca |
246 |
Q |
| |
|
|||| |
|
|
| T |
2963183 |
ctca |
2963180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 29977297 - 29977194
Alignment:
| Q |
143 |
tttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaactgtgctaatacttatcttcagtagt |
242 |
Q |
| |
|
||||||||| | |||| | ||||||||||||||||||||||||||||||| ||||| |||||||| || || ||| |||||||||| ||||||||| ||| |
|
|
| T |
29977297 |
tttgacttttcaagcttcgctcaatggcaataccagtgccatacccatacatggaacatgctggacgcaaccaaccgtgctaatacatatcttcagcagt |
29977198 |
T |
|
| Q |
243 |
ctca |
246 |
Q |
| |
|
|||| |
|
|
| T |
29977197 |
ctca |
29977194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 30019345 - 30019448
Alignment:
| Q |
143 |
tttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaactgtgctaatacttatcttcagtagt |
242 |
Q |
| |
|
||||||||| | |||| | ||||||||||||||||||||||||||||||| ||||| |||||||| || || ||| |||||||||| ||||||||| ||| |
|
|
| T |
30019345 |
tttgacttttcaagcttcgctcaatggcaataccagtgccatacccatacatggaacatgctggacgcaaccaaccgtgctaatacatatcttcagcagt |
30019444 |
T |
|
| Q |
243 |
ctca |
246 |
Q |
| |
|
|||| |
|
|
| T |
30019445 |
ctca |
30019448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 159
Target Start/End: Complemental strand, 22354297 - 22354200
Alignment:
| Q |
62 |
aaaggaaaacaagcctcatcttctcaggcacatcatccacaatcaaggtccgaaccatttcagatgccaaccacaactacctttgactttgccagcta |
159 |
Q |
| |
|
||||| |||||||||||||||||||||| || || ||||| || || ||||||||||||||| ||| |||| || |||| |||||||| ||||| |
|
|
| T |
22354297 |
aaaggcaaacaagcctcatcttctcaggtaccgcacccacacccagggcccgaaccatttcagaccccatccacggctgccttcgactttgcaagcta |
22354200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 8010205 - 8010308
Alignment:
| Q |
143 |
tttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaactgtgctaatacttatcttcagtagt |
242 |
Q |
| |
|
||||||||| | |||| | |||||||||||||||||||||||||||||| ||||| |||||||| || || ||| |||||||||| ||||||||| ||| |
|
|
| T |
8010205 |
tttgacttttcaagcttcgctcaatggcaataccagtgccatacccataaatggaacatgctggacgcaaccaaccgtgctaatacatatcttcagcagt |
8010304 |
T |
|
| Q |
243 |
ctca |
246 |
Q |
| |
|
|||| |
|
|
| T |
8010305 |
ctca |
8010308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0510 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0510
Description:
Target: scaffold0510; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 5732 - 5845
Alignment:
| Q |
138 |
ctacctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaactgtgctaatacttatcttca |
237 |
Q |
| |
|
|||| |||||| |||| |||| | ||||||||||||||||||||||||| ||| | ||||| |||||||| | || ||| |||||||||| |||||||| |
|
|
| T |
5732 |
ctacttttgacgttgcaagcttcgctcaatggcaataccagtgccatactcatgcatggaacatgctggactcaactaaccgtgctaatacatatcttca |
5831 |
T |
|
| Q |
238 |
gtagtctcaatatt |
251 |
Q |
| |
|
| ||||||| |||| |
|
|
| T |
5832 |
gcagtctcagtatt |
5845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 159
Target Start/End: Complemental strand, 53161 - 53064
Alignment:
| Q |
62 |
aaaggaaaacaagcctcatcttctcaggcacatcatccacaatcaaggtccgaaccatttcagatgccaaccacaactacctttgactttgccagcta |
159 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || ||||| || || ||||||||||| ||| ||| |||| || |||| |||||||| ||||| |
|
|
| T |
53161 |
aaaggcaaacaagcctcatcttctcaggcaccccacccacacccagggcccgaaccattttagaccccatccacggctgccttcgactttgcaagcta |
53064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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