View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0881_low_55 (Length: 250)

Name: NF0881_low_55
Description: NF0881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0881_low_55
NF0881_low_55
[»] chr5 (2 HSPs)
chr5 (6-182)||(41529525-41529701)
chr5 (6-182)||(37367872-37368048)
[»] chr3 (3 HSPs)
chr3 (6-183)||(17054157-17054334)
chr3 (10-177)||(18112485-18112654)
chr3 (178-218)||(13833051-13833091)
[»] chr8 (3 HSPs)
chr8 (6-182)||(5558903-5559079)
chr8 (18-172)||(34150117-34150271)
chr8 (7-177)||(25637367-25637538)
[»] scaffold0643 (1 HSPs)
scaffold0643 (6-183)||(7259-7434)
[»] chr4 (5 HSPs)
chr4 (6-183)||(9142781-9142958)
chr4 (8-99)||(4853646-4853738)
chr4 (40-99)||(28023212-28023271)
chr4 (7-70)||(5600660-5600724)
chr4 (7-53)||(6734429-6734476)
[»] chr6 (4 HSPs)
chr6 (6-177)||(33295135-33295306)
chr6 (7-177)||(8520589-8520760)
chr6 (18-172)||(5248828-5248982)
chr6 (7-99)||(29933631-29933724)
[»] chr2 (5 HSPs)
chr2 (6-181)||(2695997-2696164)
chr2 (10-177)||(31316038-31316207)
chr2 (10-180)||(31330816-31330988)
chr2 (10-180)||(31337537-31337709)
chr2 (18-99)||(2742403-2742484)
[»] chr7 (4 HSPs)
chr7 (10-104)||(34455432-34455527)
chr7 (8-177)||(4342389-4342559)
chr7 (7-70)||(42784842-42784906)
chr7 (7-70)||(48479019-48479083)
[»] chr1 (2 HSPs)
chr1 (22-99)||(14113687-14113764)
chr1 (7-177)||(44192873-44193045)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 6 - 182
Target Start/End: Original strand, 41529525 - 41529701
Alignment:
Q  6 ccaaaacagcttactgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacaccag 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  41529525 ccaaaacagcttactgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccgg 41529624  T
Q  106 tcataaagaaattctaacatatttaacccaataatcaactacggaagcttttggaacaacttatggcttttaacttt 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41529625 tcataaagaaattctaacatatttaacccaataatcaactacggaagcttttggaacaacttatggcttttaacttt 41529701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 6 - 182
Target Start/End: Complemental strand, 37368048 - 37367872
Alignment:
Q  6 ccaaaacagcttactgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacaccag 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37368048 ccaaaacagcttactgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaataaaatatgtatacacagctcctacaccag 37367949  T
Q  106 tcataaagaaattctaacatatttaacccaataatcaactacggaagcttttggaacaacttatggcttttaacttt 182  Q
    | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37367948 taataaataaattctaacatatttaacccaataatcaactacggaagcttttggaacaacttatggcttttaacttt 37367872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 6 - 183
Target Start/End: Complemental strand, 17054334 - 17054157
Alignment:
Q  6 ccaaaacagcttactgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacaccag 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17054334 ccaaaacagcttactgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagttcctacaccag 17054235  T
Q  106 tcataaagaaattctaacatatttaacccaataatcaactacggaagcttttggaacaacttatggcttttaacttta 183  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17054234 tcataaagaaattataacatatttaacccaataatcaactgcggaagcttttggaacaacttatggcttttaacttta 17054157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 177
Target Start/End: Original strand, 18112485 - 18112654
Alignment:
Q  10 aacagctta-ctgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacaccagtca 108  Q
    ||||||||| |||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||| |||| ||||||||||||||||||  ||| |      
T  18112485 aacagcttaactgacagcttatgacctctaaacaattccatttcaattcaaattttccagaatcaaataaaacatgtatacacagctcctaatccatttc 18112584  T
Q  109 taaagaaattctaac-atatttaacccaataatcaactacggaagcttttggaacaacttatggctttta 177  Q
    || |  ||| ||||| ||||| |  |||| ||||||||| | ||||||||||||||||||||| ||||||    
T  18112585 tacaccaatcctaacaatattaattccaaaaatcaactatgaaagcttttggaacaacttatgactttta 18112654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 13833091 - 13833051
Alignment:
Q  178 actttaatcttttatctactattatcatgagtgagtggacc 218  Q
    ||||||||||||| |||||||| ||||||||||||| ||||    
T  13833091 actttaatcttttgtctactatgatcatgagtgagtagacc 13833051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 6 - 182
Target Start/End: Original strand, 5558903 - 5559079
Alignment:
Q  6 ccaaaacagcttactgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacaccag 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |    
T  5558903 ccaaaacagcttactgacagcttatgacctctagacaattcaatttcaactcgaattttccagaatcaaagaaaatatgtatacacagcttctacaccgg 5559002  T
Q  106 tcataaagaaattctaacatatttaacccaataatcaactacggaagcttttggaacaacttatggcttttaacttt 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5559003 tcataaagaaattctaacatatttaacccaataatcaactacggaagcttttggaacaacttatggcttttagcttt 5559079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 34150271 - 34150117
Alignment:
Q  18 actgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacaccagtcataaagaaat 117  Q
    ||||||||||||||| ||||||| ||||||||||||| ||||||||||||||| ||||||||| ||||||| |||||||||| | ||  |||| ||| ||    
T  34150271 actgacagcttatgatctctagaaaattcaatttcaattcaaattttccagaaacaaagaaaacatgtataaacagctcctaaatcacccatacagatat 34150172  T
Q  118 tctaacatatttaacccaataatcaactacggaagcttttggaacaacttatggc 172  Q
    |||||||| |||||| |||||||||| |  || ||||||||||||||||||||||    
T  34150171 tctaacatgtttaactcaataatcaattctggtagcttttggaacaacttatggc 34150117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 25637538 - 25637367
Alignment:
Q  7 caaaacagctta-ctgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacaccag 105  Q
    |||||||||||| |||||| |||||  || ||| |||||||||||||   ||||||||||||||| ||||  | | ||||||| ||||||||||  |||     
T  25637538 caaaacagcttaactgacaacttatacccactaaacaattcaatttctgttcaaattttccagaagcaaaccatacatgtatatacagctcctaacccat 25637439  T
Q  106 tcataaagaaattctaacatatttaacccaataatcaactacggaagcttttggaacaacttatggctttta 177  Q
     | || || ||||||||||  || |  |||| |||||  |||| ||||||||| ||||||||||||||||||    
T  25637438 ccctacagcaattctaacacgttgattccaaaaatcagttacgaaagcttttgaaacaacttatggctttta 25637367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0643 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 6 - 183
Target Start/End: Complemental strand, 7434 - 7259
Alignment:
Q  6 ccaaaacagcttactgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacaccag 105  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  7434 ccaaaacagcttactaacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagttcctacaccaa 7335  T
Q  106 tcataaagaaattctaacatatttaacccaataatcaactacggaagcttttggaacaacttatggcttttaacttta 183  Q
    ||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7334 tc--aaagaaattctaacatatttaacccaataatcaactgcggaagcttttggaacaacttatggcttttaacttta 7259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 6 - 183
Target Start/End: Original strand, 9142781 - 9142958
Alignment:
Q  6 ccaaaacagcttactgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacaccag 105  Q
    |||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  9142781 ccaaaacaactcactgacagcttatgacctctaggcaattcaatttcaactcaaattttccaaaatcaaagaaaatatgtatacacagttcctacaccag 9142880  T
Q  106 tcataaagaaattctaacatatttaacccaataatcaactacggaagcttttggaacaacttatggcttttaacttta 183  Q
    |||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  9142881 tcataaagaaattctaacatatttaacctaataatcaaccgcggaagcttttggaacaacttatggcttttaacttta 9142958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 4853646 - 4853738
Alignment:
Q  8 aaaacagctta-ctgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctccta 99  Q
    ||||||||||| ||||||||||||| |||||| ||||||||||||| | || |||||||||||||||||||||| ||||||||| | ||||||    
T  4853646 aaaacagcttaactgacagcttatgccctctaaacaattcaatttctattctaattttccagaatcaaagaaaacatgtatacatatctccta 4853738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 28023212 - 28023271
Alignment:
Q  40 acaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctccta 99  Q
    ||||||||||||| | || |||||||||||||||||||||| ||||||||| | ||||||    
T  28023212 acaattcaatttctattctaattttccagaatcaaagaaaacatgtatacatatctccta 28023271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 5600660 - 5600724
Alignment:
Q  7 caaaacagctta-ctgacagcttatgacctctagacaattcaatttcaactcaaattttccagaa 70  Q
    |||||||||||| ||||||  ||||| |||||| |||||||||||||  ||||||||||||||||    
T  5600660 caaaacagcttaactgacaagttatgccctctaaacaattcaatttctgctcaaattttccagaa 5600724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 6734476 - 6734429
Alignment:
Q  7 caaaacagctta-ctgacagcttatgacctctagacaattcaatttca 53  Q
    |||||||||||| |||||| ||||||||||||| ||||||||||||||    
T  6734476 caaaacagcttaactgacaacttatgacctctaaacaattcaatttca 6734429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 8e-76; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 6 - 177
Target Start/End: Complemental strand, 33295306 - 33295135
Alignment:
Q  6 ccaaaacagcttactgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacaccag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33295306 ccaaaacagcttactgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacaccag 33295207  T
Q  106 tcataaagaaattctaacatatttaacccaataatcaactacggaagcttttggaacaacttatggctttta 177  Q
    || || ||||||||||||||||||||| |||||||||| ||  |||||||||||||||||||||| ||||||    
T  33295206 tcttacagaaattctaacatatttaactcaataatcaaatattgaagcttttggaacaacttatgactttta 33295135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 8520589 - 8520760
Alignment:
Q  7 caaaacagctta-ctgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacaccag 105  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  8520589 caaaacagcttaactgacagcttatgacctctagacaattaaatttcaactcaaattttccagaatcaaagaaaatatgtacacacatctcctacaccag 8520688  T
Q  106 tcataaagaaattctaacatatttaacccaataatcaactacggaagcttttggaacaacttatggctttta 177  Q
    || || ||||||||||||||||| ||| |||||||||| || ||||| ||| |||||||||| || ||||||    
T  8520689 tcttacagaaattctaacatattaaactcaataatcaaatatggaagttttcggaacaacttttgactttta 8520760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 5248982 - 5248828
Alignment:
Q  18 actgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacaccagtcataaagaaat 117  Q
    |||||||||||||| |||||| ||||||||||||  | | ||| ||||||||| |||   ||| |||| |||||| || ||| |||| |  || ||| ||    
T  5248982 actgacagcttatgccctctaaacaattcaatttttattaaaaatttccagaagcaacccaaacatgtttacacaccttctaaaccaattgtacagagat 5248883  T
Q  118 tctaacatatttaacccaataatcaactacggaagcttttggaacaacttatggc 172  Q
    |||||||| |||||| ||||||||||||| || |||||| |||||||||||||||    
T  5248882 tctaacatgtttaactcaataatcaactatggtagctttaggaacaacttatggc 5248828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 29933724 - 29933631
Alignment:
Q  7 caaaacagcttact-gacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctccta 99  Q
    |||||||||||| | ||||||||||| |||||| ||||||||||||| | || |||||||||||||||||||||| ||||||||| | ||||||    
T  29933724 caaaacagcttaattgacagcttatgccctctaaacaattcaatttctattctaattttccagaatcaaagaaaacatgtatacatatctccta 29933631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 8e-73; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 6 - 181
Target Start/End: Complemental strand, 2696164 - 2695997
Alignment:
Q  6 ccaaaacagcttactgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacaccag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2696164 ccaaaacagcttactgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacaccag 2696065  T
Q  106 tcataaagaaattctaacatatttaacccaataatcaactacggaagcttttggaacaacttatggcttttaactt 181  Q
    ||||||||||||||||||||||||||| |||         ||||||||||||||||||||||||||||||||||||    
T  2696064 tcataaagaaattctaacatatttaactcaa--------aacggaagcttttggaacaacttatggcttttaactt 2695997  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 10 - 177
Target Start/End: Original strand, 31316038 - 31316207
Alignment:
Q  10 aacagctta-ctgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacaccagtca 108  Q
    ||||||||| ||||||| |||||||||||| ||||||| ||||||| |||||||||||||||||||| |||| ||||||||||||||||||  ||| |      
T  31316038 aacagcttaactgacagtttatgacctctaaacaattccatttcaattcaaattttccagaatcaaataaaacatgtatacacagctcctaatccatttc 31316137  T
Q  109 taaagaaattctaac-atatttaacccaataatcaactacggaagcttttggaacaacttatggctttta 177  Q
    || |  ||| ||||| ||||| |  |||| ||| ||||| | ||||||||||||||||||||| ||||||    
T  31316138 tacaccaatcctaacaatattaattccaaaaattaactatgaaagcttttggaacaacttatgactttta 31316207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 31330988 - 31330816
Alignment:
Q  10 aacagctta-ctgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacaccagtca 108  Q
    ||||||||| ||||||||||||||||| || ||||||| ||||||| ||||||||||||||||||||| ||| |||| |||||| ||||||   || | |    
T  31330988 aacagcttaactgacagcttatgacctttaaacaattccatttcaattcaaattttccagaatcaaagcaaacatgtttacacatctcctaagacactta 31330889  T
Q  109 taaagaaattctaacat-atttaacccaataatcaactacggaagcttttggaacaacttatggcttttaact 180  Q
    ||  ||||||||||| |  |||||| |||||||||| |  |  |||||||||||||||||||| |||||||||    
T  31330888 tattgaaattctaacttgttttaactcaataatcaattctgatagcttttggaacaacttatgacttttaact 31330816  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 31337709 - 31337537
Alignment:
Q  10 aacagctta-ctgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacaccagtca 108  Q
    ||||||||| ||||||||||||||||| || ||||||| ||||||| ||||||||||||||||||||| ||| |||| |||||| ||||||   || | |    
T  31337709 aacagcttaactgacagcttatgacctttaaacaattccatttcaattcaaattttccagaatcaaagcaaacatgtttacacatctcctaagacactta 31337610  T
Q  109 taaagaaattctaacat-atttaacccaataatcaactacggaagcttttggaacaacttatggcttttaact 180  Q
    ||  ||||||||||| |  |||||| |||||||||| |  |  |||||||||||||||||||| |||||||||    
T  31337609 tattgaaattctaacttgttttaactcaataatcaattctgatagcttttggaacaacttatgacttttaact 31337537  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 2742484 - 2742403
Alignment:
Q  18 actgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctccta 99  Q
    |||||||||||||| |||||| ||||||||||||| | || |||||||||||||||||||||| ||||||||| | ||||||    
T  2742484 actgacagcttatgccctctaaacaattcaatttctattctaattttccagaatcaaagaaaacatgtatacatatctccta 2742403  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 34455527 - 34455432
Alignment:
Q  10 aacagctta-ctgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacacca 104  Q
    ||||||||| |||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||  ||| || |||||||| |||||| ||||    
T  34455527 aacagcttaactgacagcttatgacctctaaacaattccatttcaattcaaattttccagaatcaaactaaacatatatacacatctcctagacca 34455432  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 4342389 - 4342559
Alignment:
Q  8 aaaacagctta-ctgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacaccagt 106  Q
    ||||||||||| |||||| |||||  |||||| |||||||||||||   ||||||||||||||| ||||  | | ||||||||||||||||||  |||      
T  4342389 aaaacagcttaactgacaacttataccctctaaacaattcaatttctgttcaaattttccagaagcaaaccatacatgtatacacagctcctaacccatc 4342488  T
Q  107 cataaagaaattctaacatatttaacccaataatcaactacggaagcttttggaacaacttatggctttta 177  Q
    | || || ||||||||||  || |  |||| |||||  |||| ||||||||| ||||||||||||||||||    
T  4342489 cctacagcaattctaacacgttcattccaaaaatcagttacgaaagcttttgaaacaacttatggctttta 4342559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 42784906 - 42784842
Alignment:
Q  7 caaaacagctta-ctgacagcttatgacctctagacaattcaatttcaactcaaattttccagaa 70  Q
    |||||||||||| ||||||  ||||| |||||| |||||||||||||  ||||||||||||||||    
T  42784906 caaaacagcttaactgacaatttatgccctctaaacaattcaatttctgctcaaattttccagaa 42784842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 48479019 - 48479083
Alignment:
Q  7 caaaacagctta-ctgacagcttatgacctctagacaattcaatttcaactcaaattttccagaa 70  Q
    |||||||||||| ||||||  ||||| |||||| |||||||||||||  ||||||||||||||||    
T  48479019 caaaacagcttaactgacaagttatgccctctaaacaattcaatttctgctcaaattttccagaa 48479083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 14113764 - 14113687
Alignment:
Q  22 acagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctccta 99  Q
    |||||||||| |||||| ||||||||||||| | ||||||||||||||||||||| ||| ||||||||| | ||||||    
T  14113764 acagcttatgccctctaaacaattcaatttctattcaaattttccagaatcaaagcaaacatgtatacatatctccta 14113687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 44193045 - 44192873
Alignment:
Q  7 caaaacagctta-ctgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacaccag 105  Q
    |||||||||||| || ||| ||||||||||||| ||| ||||||||||| |||||||||||||| ||||| || | ||||||| |||| |||||  |||     
T  44193045 caaaacagcttaactaacaacttatgacctctaaacagttcaatttcaattcaaattttccagagtcaaataatacatgtataaacagatcctaacccat 44192946  T
Q  106 tcataaagaaattctaacatatttaac--ccaataatcaactacggaagcttttggaacaacttatggctttta 177  Q
    |  || || ||| || ||||  |||||  | || |||| | || ||||||||||||||||||||||||||||||    
T  44192945 ttttacagcaatccttacat-gttaacttcaaaaaatcgattatggaagcttttggaacaacttatggctttta 44192873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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