View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0881_low_60 (Length: 242)
Name: NF0881_low_60
Description: NF0881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0881_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 38763420 - 38763213
Alignment:
| Q |
1 |
attgttagaaagcaaataaatattgagtaatgagcaccacctcttaacattgtattcggagaatcctacagtgtaattcttggtcattctttaaagcaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38763420 |
attgttagaaagcaaataaatattgagtaatgagcaccacctcttaacattgtattcggagaatcctacagtgtaattcttggtcattctttaaagcaga |
38763321 |
T |
|
| Q |
101 |
atagtgttgtcccatttttgctaagaccaaagttaccaatatttttacaaaagagtacgaaatttagaaacaatcaatagtaggatttcttgaccataca |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
38763320 |
atagtgttgtgccatttttgctaagaccaaagttaccaatatttttacaaaagagtacgaaatttagaaacaatcaatagtaggatttcgtgaccataca |
38763221 |
T |
|
| Q |
201 |
tacataca |
208 |
Q |
| |
|
|||||||| |
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|
| T |
38763220 |
tacataca |
38763213 |
T |
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