View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0881_low_62 (Length: 209)

Name: NF0881_low_62
Description: NF0881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0881_low_62
NF0881_low_62
[»] chr4 (1 HSPs)
chr4 (1-94)||(26908832-26908925)
[»] chr2 (2 HSPs)
chr2 (1-94)||(38412515-38412608)
chr2 (1-94)||(8360847-8360939)
[»] chr1 (1 HSPs)
chr1 (1-94)||(34612038-34612131)


Alignment Details
Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 26908925 - 26908832
Alignment:
Q  1 tatttcgttttgagcctttaatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtaagtaacattcaattcatat 94  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  26908925 tatttcgttttgagcctttcatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtacataacattcaattcatat 26908832  T

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Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 38412608 - 38412515
Alignment:
Q  1 tatttcgttttgagcctttaatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtaagtaacattcaattcatat 94  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  38412608 tatttcgttttgagcctttcatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtacataacattcaattcatat 38412515  T

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Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 8360939 - 8360847
Alignment:
Q  1 tatttcgttttgagcctttaatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtaagtaacattcaattcatat 94  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8360939 tatttcgttttgagcctttcatttattt-cttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtacgtaacattcaattcatat 8360847  T

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Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 34612038 - 34612131
Alignment:
Q  1 tatttcgttttgagcctttaatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtaagtaacattcaattcatat 94  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  34612038 tatttcgttttgagcctttcatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtacataacattcaattcatat 34612131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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