View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0882_high_9 (Length: 251)
Name: NF0882_high_9
Description: NF0882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0882_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 39695619 - 39695841
Alignment:
| Q |
1 |
ttacctgatgaaataaatcatggcaaagttgataatgtgtattggatattagtagtgtttggaggtatcaactttgtgtattacctattgtgctctattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39695619 |
ttacctgatgaaataaatcatggcaaggttgataatgtgtattggatgttagtagtgtttggaggtatcaactttgtgtattacctattgtgctctattt |
39695718 |
T |
|
| Q |
101 |
cttacaagtatgaaaatgtttaggatgtgatgttatgataaatgtggttctatggttggaataataagtaataatgataatatgttcattttttgatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39695719 |
cttacaagtatgaaaatgtttaggatgtgatgttatgataaatgtggttctatggttggaataataagtaataatgataatatgttcattttttgatttg |
39695818 |
T |
|
| Q |
201 |
ttgaagtgatgataatattttct |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
39695819 |
ttgaagtgatgataatattttct |
39695841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 39704528 - 39704649
Alignment:
| Q |
1 |
ttacctgatgaaataaatcatggcaaagttgataatgtgtattggatattagtagtgtttggaggtatcaactttgtgtattacctattgtgctctattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| || || ||||||||| ||||||||||||||||||| || |||||||||||| |
|
|
| T |
39704528 |
ttacctgatgaaataaatcatggcaaggttgataatgtgtattggatgttggtcatgtttggagctatcaactttgtgtattacttactgtgctctattt |
39704627 |
T |
|
| Q |
101 |
cttacaagtatgaaaatgttta |
122 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
39704628 |
cttacaagtatgaaaatgttta |
39704649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 39934494 - 39934381
Alignment:
| Q |
1 |
ttacctgatgaaataaatcatggcaaagttgataatgtgtattggatattagtagtgtttggaggtatcaactttgtgtattacctattgtgctctattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| || |||||||||||| |
|
|
| T |
39934494 |
ttacctgatgaaataaatcatggcaaggttgataatgtgtattggatgttagtcgtgtttggagctatcaactttgtgtattatttactgtgctctattt |
39934395 |
T |
|
| Q |
101 |
cttacaagtatgaa |
114 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
39934394 |
cttacaaatatgaa |
39934381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 39928847 - 39928700
Alignment:
| Q |
1 |
ttacctgatgaaataaatcatggcaaagttgataatgtgtattggatattagtagtgtttggaggtatcaactttgtgtattacctattgtgctctattt |
100 |
Q |
| |
|
||||||||||| ||||||||||| || |||| |||||||| ||||| ||||| | | || ||||| ||||||||||||||| |||| || ||| | |
|
|
| T |
39928847 |
ttacctgatgacataaatcatgggaagattgacaatgtgtactggatgttagtcctactcgggggtataaactttgtgtattacttattttgttcttctc |
39928748 |
T |
|
| Q |
101 |
cttacaagtatgaaaatgttt---aggatgtgatgttatgataaatgt |
145 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39928747 |
cttacaagtatgaaaatgtttaagaggatgtgatgttatgataaatgt |
39928700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 145
Target Start/End: Complemental strand, 38059047 - 38058940
Alignment:
| Q |
41 |
attggatattagtagtgtttggaggtatcaactttgtgtattacctattgtgctctatttcttacaagtatgaaaatgttta---ggatgtgatgttatg |
137 |
Q |
| |
|
||||||| || || || ||||| |||||||||||| ||||||| |||| || ||| | |||||||||||||||||| || |||||| |||||||| |
|
|
| T |
38059047 |
attggatgttggttgtatttgggggtatcaactttaggtattacttattttgttcttctgtttacaagtatgaaaatgtgtaagaggatgtaatgttatg |
38058948 |
T |
|
| Q |
138 |
ataaatgt |
145 |
Q |
| |
|
|||||||| |
|
|
| T |
38058947 |
ataaatgt |
38058940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 426 times since January 2019
Visitors: 6714