View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0882_low_1 (Length: 708)
Name: NF0882_low_1
Description: NF0882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0882_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 193 - 605
Target Start/End: Original strand, 39331575 - 39331984
Alignment:
| Q |
193 |
gtgttgcatacaaaatacatggtttgaggttgtaaacgggaactgcnnnnnnngttaccatcattgttgatcacaaataagactctccgagaatgtttgt |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
39331575 |
gtgttgcatacaaaatacatggtttgaggttgtaaacgggaactgcaaaaaaagttaccatcattgttgatcaccaataagactctccgagaatgttagt |
39331674 |
T |
|
| Q |
293 |
tacagattttcactattgcaaaacccatagcaaatctatcttttggtgatcagtatcaattcattcacaacatcgataaatctacctttccacacacaca |
392 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39331675 |
tacagattttcactattgcaaaacccatagcatatctatcttttggtgatcagtatcaattcattcacaacatcgataaatctacctttccacacacaca |
39331774 |
T |
|
| Q |
393 |
tacaaaatgaaacgcgaaaagcacaataaattgaaacacaggcataacataagcaacttcaataaccaaaaattaatattcaaaatacttctcagtacgg |
492 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39331775 |
tacaaaatgaaacacgaaaagcacaataaattgaaacacaagcataacataagcaacttcaataaccaaaaattaatattcaaaatacttctcagtacgg |
39331874 |
T |
|
| Q |
493 |
agagattaacttaactttcaattatttcctcaaagtttgctataactacaaaaagtgtatttgaagttaaaaaccaccataggaaaagcacctaagtttt |
592 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
39331875 |
agaggttaacttaactttcaattatttcctcatagtttgctataactacaaaaagtgtatttgatgttaaaa---accataggaaaagcacctaagtttt |
39331971 |
T |
|
| Q |
593 |
gtgcttaaaaaat |
605 |
Q |
| |
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| T |
39331972 |
gtgcttaaaaaat |
39331984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 607 - 678
Target Start/End: Original strand, 39332262 - 39332333
Alignment:
| Q |
607 |
tactaatagacagtgagttataccattttttcttaaaataaaaagactattgtcttggtctttgtaccaaat |
678 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39332262 |
tactaatagacagtgatttataccattttttcttaaaataaaaagactattgtcttggtctttgtaccaaat |
39332333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 39331042 - 39331090
Alignment:
| Q |
145 |
ataagttccagtataaatacattgaattggagaaaatggtataaaaaag |
193 |
Q |
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| T |
39331042 |
ataagttccagtataaatacattgaattggagattatggtataaaaaag |
39331090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 678
Target Start/End: Original strand, 39357706 - 39357745
Alignment:
| Q |
639 |
ttaaaataaaaagactattgtcttggtctttgtaccaaat |
678 |
Q |
| |
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|||||||||| |||||||||| |||||||||||||||||| |
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|
| T |
39357706 |
ttaaaataaatagactattgtattggtctttgtaccaaat |
39357745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 516 - 568
Target Start/End: Original strand, 39015273 - 39015325
Alignment:
| Q |
516 |
atttcctcaaagtttgctataactacaaaaagtgtatttgaagttaaaaacca |
568 |
Q |
| |
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|||| ||||||||| | |||||| ||||||||||||||| ||||||| ||||| |
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|
| T |
39015273 |
attttctcaaagttcgttataaccacaaaaagtgtattttaagttaagaacca |
39015325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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